Location and associated carbon storage of erosional escarpments of seagrass Posidonia mats

Seagrasses of the genus Posidonia can form an irregular seascape due to erosional processes exposing thick walls of organic matter-rich soils. However, little is known about the location and characteristics of these particular formations. Here we provide comprehensive estimates of organic carbon (Corg) storage in Posidonia oceanica and Posidonia australis meadows, while providing insight into their location and mechanisms of formation, and highlighting future research directions. Erosional reef escarpments are restricted to shallow highly productive P. oceanica meadows from the Mediterranean Sea and P. australis meadows from the Indian Ocean, and sustain the existence of Corg-rich deposits in surrounding meadows. The thickness of the mat escarpments can reach up to 3 m and their length can vary from few to hundreds of meters. Mechanisms of formation appear to differ among sites, from naturally-induced escarpments by wave action and/or tidal flow to human-induced escarpments by dredging activities. The inter-twined remains of seagrass shoots within the sediment matrix consolidate the sandy substrate and hold the exposed Posidonia mat escarpments together, maintaining a semi-rigid structure. This phenomenon is unusual but of exceptional importance in marine biogeochemical cycles, revealing the largest Corg sinks among seagrasses worldwide (ranging from 15 to 176 kg Corg m−2 in 2 m-thick mats accumulated at 2–249 g Corg m−2 yr−1 over 300–3000 yr)

Experimental Analysis of Nonlinear Impairments in Fibre Optic Transmission Systems up to 7.3 THz

An effective way of increasing the overall optical fibre capacity is by expanding the bandwidth used to transmit signals. In this paper, the impact of expanding the transmission bandwidth on the optical communication system is experimentally studied using the achievable rates as a performance metric. The trade-offs between the use of larger bandwidths and higher nonlinear interference (NLI) noise is experimentally and theoretically analysed. The growth of NLI noise is investigated for spectral bandwidths from 40 GHz up to 7.3 THz using 64-QAM and Nyquist pulse-shaping. Experimental results are shown to be in line with the predictions from the Gaussian-Noise model showing a logarithmic growth in NLI noise as the signal bandwidth is extended. A reduction of the information rate of only 10 % was found between linear and non-linear transmission across several transmission bandwidths, increasing up to 7.3 THz. Finally, the power transfer between channels due to stimulated Raman scattering effect is analysed showing up to 2 dB power tilt at optimum power for the largest transmitted bandwidth of 7.3 THz

The effect of S-substitution at the O6-guanine site on the structure and dynamics of a DNA oligomer containing a G:T mismatch

The effect of S-substitution on the O6 guanine site of a 13-mer DNA duplex containing a G:T mismatch is studied using molecular dynamics. The structure, dynamic evolution and hydration of the S-substituted duplex are compared with those of a normal duplex, a duplex with Ssubstitution on guanine, but no mismatch and a duplex with just a G:T mismatch. The S-substituted mismatch leads to cell death rather than repair. One suggestion is that the G:T mismatch recognition protein recognises the S-substituted mismatch (GS:T) as G:T. This leads to a cycle of futile repair ending in DNA breakage and cell death. We find that some structural features of the helix are similar for the duplex with the G:T mismatch and that with the S-substituted mismatch, but differ from the normal duplex, notably the helical twist. These differences arise from the change in the hydrogen-bonding pattern of the base pair. However a marked feature of the S-substituted G:T mismatch duplex is a very large opening. This showed considerable variability. It is suggested that this enlarged opening would lend support to an alternative model of cell death in which the mismatch protein attaches to thioguanine and activates downstream damage-response pathways. Attack on the sulphur by reactive oxygen species, also leading to cell death, would also be aided by the large, variable opening

Preventing ethics dumping: the challenges for Kenyan research ethics committees

Ethics dumping is the practice of undertaking research in a low- or middle-income setting which would not be permitted, or would be severely restricted, in a high-income setting. Whilst Kenya operates a sophisticated research governance system, resource constraints and the relatively low number of accredited research ethics committees limit the capacity for ensuring ethical compliance. As a result, Kenya has been experiencing cases of ethics dumping. This article presents 11 challenges in the context of preventing ethics dumping in Kenya, namely variations in governance standards, resistance to double ethics review, resource constraints, unresolved issues in the management of biological samples, unresolved issues in the management of primary data, unsuitable informed consent procedures, cultural insensitivity, differing standards of care, reluctance to provide feedback to research communities, power differentials which facilitate the exploitation of local researchers and lack of local relevance and/or affordability of the resultant products. A reflective approach for researchers, built around the values of fairness, respect, care and honesty, is presented as a means of taking shared responsibility for preventing ethics dumping

Digital Back-Propagation Performance in Wideband Optical Fibre Transmission Systems

Single channel digital back-propagation (SC-DBP) performance with different transmission bandwidths is experimentally and theoretically investigated. The SC-DBP gain reduces with transmission bandwidth; from 1.2 b/sym for single channel to 0.2 b/sym for C-band transmission at 2000 km

Palladium-templated subcomponent self-assembly of macrocycles, catenanes, and rotaxanes.

The reaction of 2,6-diformylpyridine with diverse amines and Pd(II) ions gave rise to a variety of metallosupramolecular species, in which the Pd(II) ion is observed to template a tridentate bis(imino)pyridine ligand. These species included a mononuclear complex as well as [2+2] and [3+3] macrocycles. The addition of pyridine-containing macrocyclic capping ligands allows for topological complexity to arise, thereby enabling the straightforward preparation of structures that include a [2]catenane, a [2]rotaxane, and a doubly threaded [3]rotaxane.This work was underwritten by the Marie Curie Academic-Industrial Initial Training Network on Dynamic Molecular Nanostructures (DYNAMOL) of the European Union’s Seventh Framework Programme (FP7) and the UK Engineering and Physical Sciences Research Council (EPSRC). We thank the Cambridge Chemistry NMR service for experimental assistance, Diamond Light Source (UK) for synchrotron beamtime on I19 (MT7984), and the EPSRC National Crystallography Service for X-ray data collection.This is the final version of the article. It first appeared from Wiley via http://dx.doi.org/10.1002/anie.20140616

Secular evolution versus hierarchical merging: galaxy evolution along the Hubble sequence, in the field and rich environments

In the current galaxy formation scenarios, two physical phenomena are invoked to build disk galaxies: hierarchical mergers and more quiescent external gas accretion, coming from intergalactic filaments. Although both are thought to play a role, their relative importance is not known precisely. Here we consider the constraints on these scenarios brought by the observation-deduced star formation history on the one hand, and observed dynamics of galaxies on the other hand: the high frequency of bars and spirals, the high frequency of perturbations such as lopsidedness, warps, or polar rings. All these observations are not easily reproduced in simulations without important gas accretion. N-body simulations taking into account the mass exchange between stars and gas through star formation and feedback, can reproduce the data, only if galaxies double their mass in about 10 Gyr through gas accretion. Warped and polar ring systems are good tracers of this accretion, which occurs from cold gas which has not been virialised in the system's potential. The relative importance of these phenomena are compared between the field and rich clusters. The respective role of mergers and gas accretion vary considerably with environment.Comment: 18 pages, 8 figures, review paper to "Penetrating Bars through Masks of Cosmic Dust: the Hubble Tuning Fork Strikes a New Note", Pilanesberg, ed. D. Block et al., Kluwe

The role of stellar mass and environment for cluster blue fraction, AGN fraction and star-formation indicators from a targeted analysis of Abell 1691

We present an analysis of the galaxy population of the intermediate X-ray luminosity galaxy cluster, Abell 1691, from SDSS and Galaxy Zoo data to elucidate the relationships between environment and galaxy stellar mass for a variety of observationally important cluster populations that include the Butcher-Oemler blue fraction, the active galactic nucleus (AGN) fraction and other spectroscopic classifications of galaxies. From 342 cluster members, we determine a cluster recession velocity of 21257+/-54 km/s and velocity dispersion of 1009^+40_-36 km/s and show that although the cluster is fed by multiple filaments of galaxies it does not possess significant sub-structure in its core. We identify the AGN population of the cluster from a BPT diagram and show that there is a mild increase in the AGN fraction with radius from the cluster centre that appears mainly driven by high mass galaxies (log(stellar mass)>10.8). Although the cluster blue fraction follows the same radial trend, it is caused primarily by lower mass galaxies (log(stellar mass)<10.8). Significantly, the galaxies that have undergone recent star-bursts or are presently star-bursting but dust-shrouded (spectroscopic e(a) class galaxies) are also nearly exclusively driven by low mass galaxies. We therefore suggest that the Butcher-Oemler effect may be a mass-dependant effect. We also examine red and passive spiral galaxies and show that the majority are massive galaxies, much like the rest of the red and spectroscopically passive cluster population. We further demonstrate that the velocity dispersion profiles of low and high mass cluster galaxies are different. Taken together, we infer that the duty cycle of high and low mass cluster galaxies are markedly different, with a significant departure in star formation and specific star formation rates observed beyond r_200 and we discuss these findings.Comment: 17 pages, 14 figures (one degraded due to size constraints), accepted for publication in MNRA

Integrated genomics and proteomics define huntingtin CAG length-dependent networks in mice.

To gain insight into how mutant huntingtin (mHtt) CAG repeat length modifies Huntington's disease (HD) pathogenesis, we profiled mRNA in over 600 brain and peripheral tissue samples from HD knock-in mice with increasing CAG repeat lengths. We found repeat length-dependent transcriptional signatures to be prominent in the striatum, less so in cortex, and minimal in the liver. Coexpression network analyses revealed 13 striatal and 5 cortical modules that correlated highly with CAG length and age, and that were preserved in HD models and sometimes in patients. Top striatal modules implicated mHtt CAG length and age in graded impairment in the expression of identity genes for striatal medium spiny neurons and in dysregulation of cyclic AMP signaling, cell death and protocadherin genes. We used proteomics to confirm 790 genes and 5 striatal modules with CAG length-dependent dysregulation at the protein level, and validated 22 striatal module genes as modifiers of mHtt toxicities in vivo

Development of Sensory, Motor and Behavioral Deficits in the Murine Model of Sanfilippo Syndrome Type B

BACKGROUND: Mucopolysaccharidosis (MPS) IIIB (Sanfilippo Syndrome type B) is caused by a deficiency in the lysosomal enzyme N-acetyl-glucosaminidase (Naglu). Children with MPS IIIB develop disturbances of sleep, activity levels, coordination, vision, hearing, and mental functioning culminating in early death. The murine model of MPS IIIB demonstrates lysosomal distention in multiple tissues, a shortened life span, and behavioral changes. PRINCIPAL FINDINGS: To more thoroughly assess MPS IIIB in mice, alterations in circadian rhythm, activity level, motor function, vision, and hearing were tested. The suprachiasmatic nucleus (SCN) developed pathologic changes and locomotor analysis showed that MPS IIIB mice start their daily activity later and have a lower proportion of activity during the night than wild-type controls. Rotarod assessment of motor function revealed a progressive inability to coordinate movement in a rocking paradigm. Purkinje cell counts were significantly reduced in the MPS IIIB animals compared to age matched controls. By electroretinography (ERG), MPS IIIB mice had a progressive decrease in the amplitude of the dark-adapted b-wave response. Corresponding pathology revealed shortening of the outer segments, thinning of the outer nuclear layer, and inclusions in the retinal pigmented epithelium. Auditory-evoked brainstem responses (ABR) demonstrated progressive hearing deficits consistent with the observed loss of hair cells in the inner ear and histologic abnormalities in the middle ear. CONCLUSIONS/SIGNIFICANCE: The mouse model of MPS IIIB has several quantifiable phenotypic alterations and is similar to the human disease. These physiologic and histologic changes provide insights into the progression of this disease and will serve as important parameters when evaluating various therapies