Self-diffusion of rod-like viruses in the nematic phase

We measure the self-diffusion of colloidal rod-like virus {\it fd} in an isotropic and nematic phase. A low volume fraction of viruses are labelled with a fluorescent dye and dissolved in a background of unlabelled rods. The trajectories of individual rods are visualized using fluorescence microscopy from which the diffusion constant is extracted. The diffusion parallel ($D_{\parallel}$) and perpendicular ($D_{\perp}$) to the nematic director is measured. The ratio ($D_{\parallel}/D_{\perp}$) increases monotonically with increasing virus concentration. Crossing the isotropic-nematic phase boundary results in increase of $D_{\parallel}$ and decrease of $D_{\perp}$ when compared to the diffusion in the isotropic phase ($D_{iso}$).Comment: 7 pages, 4 figures, to appear in Europhysics Letter

Interplay between a hydrodynamic instability and a phase transition: the Faraday instability in dispersions of rodlike colloids

Strong effects of the Faraday instability on suspensions of rodlike colloidal particles are reported through measurements of the critical acceleration and of the surface wave amplitude. We show that the transition to parametrically excited surface waves displays discontinuous and hysteretic features. This subcritical behaviour is attributed to the shear-thinning properties of our colloidal suspensions thanks to a phenomenological model based on rheological data under large amplitude oscillatory shear. Birefringence measurements provide direct evidence that Faraday waves induce local nematic ordering of the rodlike colloids. While local alignment simply follows the surface oscillations for dilute, isotropic suspensions, permanent nematic patches are generated by surface waves in samples close to the isotropic-to-nematic transition and above the transition large domains align in the flow direction. This strong coupling between the fluid microstructure and a hydrodynamic instability is confirmed by numerical computations based on the microstructural response of rodlike viruses in shear flow.Comment: 8 pages, 6 figure

Fast Diffusion of Long Guest Rods in a Lamellar Phase of Short Host Particles

We investigate the dynamic behavior of long guest rod-like particles immersed in liquid crystalline phases formed by shorter host rods, tracking both guest and host particles by fluorescence microscopy. Counter-intuitively, we evidence that long rods diffuse faster than short rods forming the one-dimensional ordered smectic-A phase. This results from the larger and non-commensurate size of the guest particles as compared to the wavelength of the energy landscape set by the lamellar stack of liquid slabs. The long guest particles are also shown to be still mobile in the crystalline smectic-B phase, as they generate their own voids in the adjacent layers.Comment: 5 pages, 4 figures, Accepted in Phys. Rev. Let

Glasses of dynamically asymmetric binary colloidal mixtures: Quiescent properties and dynamics under shear

We investigate mixing effects on the glass state of binary colloidal hard-sphere-like mixtures with large size asymmetry, at a constant volume fraction phi = 0.61. The structure, dynamics and viscoelastic response as a function of mixing ratio reflect a transition between caging by one or the other component. The strongest effect of mixing is observed in systems dominated by caging of the large component. The possibility to pack a large number of small spheres in the free volume left by the large ones induces a pronounced deformation of the cage of the large spheres, which become increasingly delocalised. This results in faster dynamics and a strong reduction of the elastic modulus. When the relative volume fraction of small spheres exceeds that of large spheres, the small particles start to form their own cages, slowing down the dynamics and increasing the elastic modulus of the system. The large spheres become the minority and act as an impurity in the ordering beyond the first neighbour shell, i.e. the cage, and do not directly affect the particle organisation on the cage level. In such a system, when shear at constant rate is applied, melting of the glass is observed due to facilitated out-of-cage diffusion which is associated with structural anisotropy induced by shear.Comment: 8 pages, 7 figures, Proceedings of the 4th International Symposium on Slow Dynamics in Complex Systems, Sendai, 2-7 December 201

When bigger is faster: a self-van Hove analysis of the enhanced self-diffusion of non-commensurate guest particles in smectics

We investigate the anomalous dynamics in smectic phases of short host rods where, counter-intuitively, long guest rod-shaped particles diffusive faster than the short host ones, due to their precise size mismatch. In addition to the previously reported mean-square displacement, we analyze the time evolution of the Self-van Hove functions G(r,t), as this probability density function uncovers intrinsic heterogeneous dynamics. Through this analysis, we show that the dynamics of the host particles parallel to the director becomes non-gaussian and therefore heterogeneous after the nematic-to-smectic-A phase transition, even though it exhibits a nearly diffusive behavior according to its mean-square displacement. In contrast, the non-commensurate guest particles display Gaussian dynamics of the parallel motion, up to the transition to the smectic-B phase. Thus, we show that the Self-van Hove function is a very sensitive probe to account for the instantaneous and heterogeneous dynamics of our system, and should be more widely considered as a quantitative and complementary approach of the classical mean-square displacement characterization in diffusion processes.Comment: 10 pages, 9 figures, the article has been accepted by the Journal of Chemical Physic

Self-diffusion of Rod-like Viruses Through Smectic Layer

We report the direct visualization at the scale of single particles of mass transport between smectic layers, also called permeation, in a suspension of rod-like viruses. Self-diffusion takes place preferentially in the direction normal to the smectic layers, and occurs by quasi-quantized steps of one rod length. The diffusion rate corresponds with the rate calculated from the diffusion in the nematic state with a lamellar periodic ordering potential that is obtained experimentally.Comment: latex, 4 pages, 4 figures, accepted in Phys. Rev. Let

Nematic-Isotropic Spinodal Decomposition Kinetics of Rod-like Viruses

We investigate spinodal decomposition kinetics of an initially nematic dispersion of rod-like viruses (fd virus). Quench experiments are performed from a flow-stabilized homogeneous nematic state at high shear rate into the two-phase isotropic-nematic coexistence region at zero shear rate. We present experimental evidence that spinodal decomposition is driven by orientational diffusion, in accordance with a very recent theory.Comment: 17 pages, 6 figures, accepted in Phys. Rev.

Kinetic pathways of the Nematic-Isotropic phase transition as studied by confocal microscopy on rod-like viruses

We investigate the kinetics of phase separation for a mixture of rodlike viruses (fd) and polymer (dextran), which effectively constitutes a system of attractive rods. This dispersion is quenched from a flow-induced fully nematic state into the region where the nematic and the isotropic phase coexist. We show experimental evidence that the kinetic pathway depends on the overall concentration. When the quench is made at high concentrations, the system is meta-stable and we observe typical nucleation-and-growth. For quenches at low concentration the system is unstable and the system undergoes a spinodal decomposition. At intermediate concentrations we see the transition between both demixing processes, where we locate the spinodal point.Comment: 11 pages, 6 figures, accepted in J. Phys.: Condens. Matter as symposium paper for the 6th Liquid Matter Conference in Utrech

Development and Validation of a Risk Score for Chronic Kidney Disease in HIV Infection Using Prospective Cohort Data from the D:A:D Study

Ristola M. on työryhmien DAD Study Grp ; Royal Free Hosp Clin Cohort ; INSIGHT Study Grp ; SMART Study Grp ; ESPRIT Study Grp jäsen.Background Chronic kidney disease (CKD) is a major health issue for HIV-positive individuals, associated with increased morbidity and mortality. Development and implementation of a risk score model for CKD would allow comparison of the risks and benefits of adding potentially nephrotoxic antiretrovirals to a treatment regimen and would identify those at greatest risk of CKD. The aims of this study were to develop a simple, externally validated, and widely applicable long-term risk score model for CKD in HIV-positive individuals that can guide decision making in clinical practice. Methods and Findings A total of 17,954 HIV-positive individuals from the Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) study with >= 3 estimated glomerular filtration rate (eGFR) values after 1 January 2004 were included. Baseline was defined as the first eGFR > 60 ml/min/1.73 m2 after 1 January 2004; individuals with exposure to tenofovir, atazanavir, atazanavir/ritonavir, lopinavir/ritonavir, other boosted protease inhibitors before baseline were excluded. CKD was defined as confirmed (>3 mo apart) eGFR In the D:A:D study, 641 individuals developed CKD during 103,185 person-years of follow-up (PYFU; incidence 6.2/1,000 PYFU, 95% CI 5.7-6.7; median follow-up 6.1 y, range 0.3-9.1 y). Older age, intravenous drug use, hepatitis C coinfection, lower baseline eGFR, female gender, lower CD4 count nadir, hypertension, diabetes, and cardiovascular disease (CVD) predicted CKD. The adjusted incidence rate ratios of these nine categorical variables were scaled and summed to create the risk score. The median risk score at baseline was -2 (interquartile range -4 to 2). There was a 1: 393 chance of developing CKD in the next 5 y in the low risk group (risk score = 5, 505 events), respectively. Number needed to harm (NNTH) at 5 y when starting unboosted atazanavir or lopinavir/ritonavir among those with a low risk score was 1,702 (95% CI 1,166-3,367); NNTH was 202 (95% CI 159-278) and 21 (95% CI 19-23), respectively, for those with a medium and high risk score. NNTH was 739 (95% CI 506-1462), 88 (95% CI 69-121), and 9 (95% CI 8-10) for those with a low, medium, and high risk score, respectively, starting tenofovir, atazanavir/ritonavir, or another boosted protease inhibitor. The Royal Free Hospital Clinic Cohort included 2,548 individuals, of whom 94 individuals developed CKD (3.7%) during 18,376 PYFU (median follow-up 7.4 y, range 0.3-12.7 y). Of 2,013 individuals included from the SMART/ESPRIT control arms, 32 individuals developed CKD (1.6%) during 8,452 PYFU (median follow-up 4.1 y, range 0.6-8.1 y). External validation showed that the risk score predicted well in these cohorts. Limitations of this study included limited data on race and no information on proteinuria. Conclusions Both traditional and HIV-related risk factors were predictive of CKD. These factors were used to develop a risk score for CKD in HIV infection, externally validated, that has direct clinical relevance for patients and clinicians to weigh the benefits of certain antiretrovirals against the risk of CKD and to identify those at greatest risk of CKD.Peer reviewe