Holocene evolution of Apalachicola Bay, Florida

This paper is not subject to U.S. copyright. The definitive version was published in Geo-Marine Letters 29 (2009): 395-404, doi:10.1007/s00367-009-0159-1.A program of geophysical mapping and vibracoring was conducted to better understand the geologic evolution of Apalachicola Bay. Analyses of the geophysical data and sediment cores along with age control provided by 34 AMS 14C dates on marine shells and wood reveal the following history. As sea level rose in the early Holocene, fluvial deposits filled the Apalachicola River paleochannel, which extended southward under the central part of the bay and seaward across the continental shelf. Sediments to either side of the paleochannel contain abundant wood fragments, with dates documenting that those areas were forested at 8,000 14C years b.p. As sea level continued to rise, spits formed of headland prodelta deposits. Between ~6,400 and ~2,500 14C years b.p., an Apalachicola prodelta prograded and receded several times across the inner shelf that underlies the western part of the bay. An eastern deltaic lobe was active for a shorter time, between ~5,800 and 5,100 14C years b.p. Estuarine benthic foraminiferal assemblages occurred in the western bay as early as 6,400 14C years b.p., and indicate that there was some physical barrier to open-ocean circulation and shelf species established by that time. It is considered that shoals formed in the region of the present barrier islands as the rising sea flooded an interstream divide. Estuarine conditions were established very early in the post-glacial flooding of the bay

In Search of the High Road: Meaning and Evidence

This article is the first in a series to celebrate the 70th anniversary of the ILR Review. We will be highlighting important research themes that have been featured in the journal over its many years of publication. In this article, Paul Osterman reviews research on the quality of jobs and recent debates over “High Road” and “Low Road” approaches to employment practices. Scholars and policy advocates frequently utilize the distinction between High Road and Low Road firms as a framework for efforts to improve the quality of work in low-wage employers. This article assesses the logic and evidence that underlies this construct. The author provides a definition of the concept and examines the evidence behind the assumption that firms have a choice in how they design their employment policies. He then takes up the assertion that firms that adopt a High Road model can “do well by doing good” and adds precision to this claim by reviewing the evidence that a profit-maximizing firm would benefit from following the High Road path. The article concludes by suggesting a research agenda and providing a framework for policy that flows from the conclusions drawn from the existing research base

The role of micro-organisms (Staphylococcus aureus and Candida albicans) in the pathogenesis of breast pain and infection in lactating women: study protocol

Background: The CASTLE (Candida and Staphylococcus Transmission: Longitudinal Evaluation) study will investigate the micro-organisms involved in the development of mastitis and &ldquo;breast thrush&rdquo; among breastfeeding women. To date, the organism(s) associated with the development of breast thrush have not been identified. The CASTLE study will also investigate the impact of physical health problems and breastfeeding problems on maternal psychological health in the early postpartum period.Methods/Design: The CASTLE study is a longitudinal descriptive study designed to investigate the role of Staphylococcus spp (species) and Candida spp in breast pain and infection among lactating women, and to describe the transmission dynamics of S. aureus and Candida spp between mother and infant. The relationship between breastfeeding and postpartum health problems as well as maternal psychological well-being is also being investigated. A prospective cohort of four hundred nulliparous women who are at least thirty six weeks gestation pregnant are being recruited from two hospitals in Melbourne, Australia (November 2009 to June 2011). At recruitment, nasal, nipple (both breasts) and vaginal swabs are taken and participants complete a questionnaire asking about previous known staphylococcal and candidal infections. Following the birth, participants are followed-up six times: in hospital and then at home weekly until four weeks postpartum. Participants complete a questionnaire at each time points to collect information about breastfeeding problems and postpartum health problems. Nasal and nipple swabs and breast milk samples are collected from the mother. Oral and nasal swabs are collected from the baby. A telephone interview is conducted at eight weeks postpartum to collect information about postpartum health problems and breastfeeding problems, such as mastitis and nipple and breast pain.Discussion: This study is the first longitudinal study of the role of both staphylococcal and candidal colonisation in breast infections and will help to resolve the current controversy about which is the primary organism in the condition known as breast thrush. This study will also document transmission dynamics of S. aureus and Candida spp between mother and infant. In addition, CASTLE will investigate the impact of common maternal physical health symptoms and the effect of breastfeeding problems on maternal psychological well-being.<br /

Alignment of the ALICE Inner Tracking System with cosmic-ray tracks

37 pages, 15 figures, revised version, accepted by JINSTALICE (A Large Ion Collider Experiment) is the LHC (Large Hadron Collider) experiment devoted to investigating the strongly interacting matter created in nucleus-nucleus collisions at the LHC energies. The ALICE ITS, Inner Tracking System, consists of six cylindrical layers of silicon detectors with three different technologies; in the outward direction: two layers of pixel detectors, two layers each of drift, and strip detectors. The number of parameters to be determined in the spatial alignment of the 2198 sensor modules of the ITS is about 13,000. The target alignment precision is well below 10 micron in some cases (pixels). The sources of alignment information include survey measurements, and the reconstructed tracks from cosmic rays and from proton-proton collisions. The main track-based alignment method uses the Millepede global approach. An iterative local method was developed and used as well. We present the results obtained for the ITS alignment using about 10^5 charged tracks from cosmic rays that have been collected during summer 2008, with the ALICE solenoidal magnet switched off.Peer reviewe

HLA-DQA1*05 carriage associated with development of anti-drug antibodies to infliximab and adalimumab in patients with Crohn's Disease

Anti-tumor necrosis factor (anti-TNF) therapies are the most widely used biologic drugs for treating immune-mediated diseases, but repeated administration can induce the formation of anti-drug antibodies. The ability to identify patients at increased risk for development of anti-drug antibodies would facilitate selection of therapy and use of preventative strategies.This article is freely available via Open Access. Click on Publisher URL to access the full-text

Genomic investigations of unexplained acute hepatitis in children

Since its first identification in Scotland, over 1,000 cases of unexplained paediatric hepatitis in children have been reported worldwide, including 278 cases in the UK1. Here we report an investigation of 38 cases, 66 age-matched immunocompetent controls and 21 immunocompromised comparator participants, using a combination of genomic, transcriptomic, proteomic and immunohistochemical methods. We detected high levels of adeno-associated virus 2 (AAV2) DNA in the liver, blood, plasma or stool from 27 of 28 cases. We found low levels of adenovirus (HAdV) and human herpesvirus 6B (HHV-6B) in 23 of 31 and 16 of 23, respectively, of the cases tested. By contrast, AAV2 was infrequently detected and at low titre in the blood or the liver from control children with HAdV, even when profoundly immunosuppressed. AAV2, HAdV and HHV-6 phylogeny excluded the emergence of novel strains in cases. Histological analyses of explanted livers showed enrichment for T cells and B lineage cells. Proteomic comparison of liver tissue from cases and healthy controls identified increased expression of HLA class 2, immunoglobulin variable regions and complement proteins. HAdV and AAV2 proteins were not detected in the livers. Instead, we identified AAV2 DNA complexes reflecting both HAdV-mediated and HHV-6B-mediated replication. We hypothesize that high levels of abnormal AAV2 replication products aided by HAdV and, in severe cases, HHV-6B may have triggered immune-mediated hepatic disease in genetically and immunologically predisposed children

Data report: Strontium isotope dating of barnacle fragments: Antarctic Peninsula Site 1103

Strontium isotope ratios from multiple plates of two barnacle fragments from Site 1103 (Ocean Drilling Program Leg 178) provide maximum age estimates for the oldest glacial sedimentary package drilled. Three moderately preserved barnacle fragments from 262.63 meters below seafloor (mbsf) yielded a mean best-fit age of 7.4 Ma. A single, wellpreserved fragment from the same horizon yielded a best-fit age of 12.2 Ma. Two moderately preserved fragments from 262.98 mbsf yielded a mean best-fit age of 7.8 Ma. The calculated mean strontium ages of 7.8 and 7.4 Ma agree well with the diatom estimates of 8.68 to 5.89 Ma for the underlying sediments

Distribution of Modern Salt-Marsh Foraminifera from the Eastern Mississippi Sound, U.S.A.

This study documented surface distributions of live and dead foraminiferal assemblages in the low-gradient tidal marshes of the barrier island and estuarine complex of the eastern Mississippi Sound (Grand Bay, Pascagoula River, Fowl River, Dauphin Island). A total of 71,833 specimens representing 38 species were identified from a gradient of different elevation zones across the study area. We identified five live assemblages and nine biofacies for the dead assemblages from estuarine, low marsh, middle marsh, high marsh, and upland transition environments. Although dissolution of calcareous tests was observed in the dead assemblages, characteristic species and abundance patterns dependent on elevation in the intertidal zone were similar between living assemblages and dead biofacies. The assemblages from the eastern Mississippi Sound estuaries were dominated by Ammonia tepida, Cribroelphidium poeyanum, C. excavatum, and Paratrochammina simplissima. The low marshes were dominated by Ammotium salsum, Ammobaculites exiguus, and Miliammina fusca. The dominant species in the middle marshes was Arenoparrella mexicana. The most abundant species in the high marshes was Entzia macrescens. The upland–marsh transition zones were dominated by Trochamminita irregularis and Pseudothurammina limnetis. Canonical correspondence analysis was applied to assess the relationship between a priori defined biofacies and measured environmental data (elevation, grain size, organic matter, and salinity) to test the hypothesis that distribution of foraminiferal assemblages is driven by elevation and hence flooding frequency. Salinity was the second most important explanatory variable of dead assemblages. Riverine freshwater from the Pascagoula River markedly influenced the live and dead assemblages in the Pascagoula River marsh, which was represented by low diversity and densities and dominance by Ammoastuta inepta. The relationship between the measured environmental variables and assemblage distributions can be used in future Mississippi Sound paleo-environmental studies

Influence of Hypoxia On Biogenic Structure In Sedmients On the Louisiana Continental Shelf

As part of a study of the effects of seasonal hypoxia on sediment properties, samples were collected during the spring and late summer of 2009 from four sites of similar sediment type and water depth (30-39m), but different recent history of bottom water oxygen concentration on the continental shelf of Louisiana. Sediment profile imaging (SPI), box coring, X-radiography, and computed tomography (CT) imaging were employed to characterize the biogenic structural differences in surficial sediments among a normoxic control site and three sites subjected to hypoxic events varying in frequency of occurrence. Results of the CT imagery indicated that macrobenthic biogenic structures were the most numerous at the H7 site that had experienced the least hypoxia in the past 23 years. The E4 site that had experienced hypoxia seasonally with a frequency between 50% and 75% of the time had the fewest biogenic structures in spring 2009, but exhibited recovery in terms of their abundance and diameter in summer 2009. E4 also exhibited high rates of bioturbation during the late-summer sampling as determined from excess 234Th. This suggests that the macrobenthos community at this site was in an active phase of recovery from hypoxia. At the A6 site, exposed to hypoxia with an annual frequency ≥75%, biogenic structures were numerous but dimensionally small, correlating with the average individual size of macrobenthos found there. The total volume maxima occupied by biogenic structures in the sediment occurred below the uppermost sediment intervals, with the exception of the spring sample from the D5 site that experienced hypoxia between 25% and 50% of the time. CT-imagery indicating effects of seasonal hypoxia on biogenic structure in the top 10cm of sediments detected more structures than SPI, X-radiographic imagery, or macrobenthos census data. The presence of relict burrows probably inflated estimates of biogenic structures in the subcores, rendering an integrated result that included creation, destruction, and preservation of burrows and voids over time