Initial geological considerations before installing ground source heat pump systems

The performance of an open- or closed-loop ground source heat pump system depends on local geological conditions. It is important that these are determined as accurately as possible when designing a system, to maximize efficiency and minimize installation costs. Factors that need to be considered are surface temperature, subsurface temperatures down to 100–200 m, thermal conductivities and diffusivities of the soil and rock layers, groundwater levels and flows, and aquifer properties. In addition, rock strength is a critical factor in determining the excavation or drilling method required at a site and the associated costs. The key to determining all of these factors is an accurate conceptual site-scale model of the ground conditions (soils, geology, thermogeology, engineering geology and hydrogeology). The British Geological Survey has used the modern digital geological mapping of the UK as a base onto which appropriate attributes can be assigned. As a result it is possible to generate regional maps of surface and subsurface temperatures, rock strength and depth to water. This information can be used by designers, planners and installers of ground source heat pump systems. The use of appropriate geological factors will assist in creating a system that meets the heating or cooling load of the building without unnecessary overengineering

Anthropogenic contribution to the geological and geomorphological record: a case study from Great Yarmouth, Norfolk, UK

Reconstruction of artificial or anthropogenic topographies, sediment thicknesses and volumes provides a mechanism for quantifying anthropogenic changes to sedimentary systems in the context of the proposed Anthropocene epoch. We present a methodology for determining the volumetric contribution of anthropogenic deposits to the geological and geomorphological record and apply it to the Great Yarmouth area of Norfolk, UK. 115 boreholes, drilled to a maximum depth of 6 m below ground level, were used to determine the thickness and distribution of seven geo-archaeological units comprising natural and anthropogenic deposits in the central Great Yarmouth area. This was supplemented by additional depth information derived from 467 existing ground investigation boreholes and published 1:50 000 scale geological maps. The top and base of each geo-archaeological unit were modelled from elevations recorded in the borehole data. Grids were produced using a natural neighbour analysis with a 25 m cell size using MapInfo 8.0 Vertical Mapper 3.1 to produce palaeotopographical surfaces. Maximum, minimum and average elevations for each geo-archaeological unit generally increase with decreasing age with the exception of the Early-Medieval palaeotopographical surface which locally occurs at higher elevations than that of the younger Late-Medieval unit. The total sediment volume for the combined Modern, Post-Medieval, Late-Medieval and Early-Medieval geo-archaeological units is 10.91x105m3. The total sediment volume for the Aeolian, River Terrace and Marine geo-archaeological units combined is 65.58 x105m3. Anthropogenic sedimentation rates were calculated to increase from ~ 590 m3/yr during the Early-Medieval period, ~ 1500 m3/yr during the Post-Medieval period and ~ 2300 m3/yr during the Modern period. It is estimated that the combined anthropogenic geo-archaeological units contribute approximately 15% of the total volume of sediments that would have been traditionally considered natural Holocene deposits in the Great Yarmouth area. The results indicate that an approach combining geological and archaeological deposits modelling can be used to quantify anthropogenic landscape impact and its associated sediment flux

Early Holocene geomorphology of the Great Yarmouth area, Norfolk, UK

A 1:15,000 scale map of the early Holocene geomorphology of the Great Yarmouth area, covering 33 km2 between National Grid Reference (NGR) 651022, 312244 (northwest corner) and NGR 654523, 303498 (southeast corner) is presented. This was interpolated from elevations for early Holocene deposits derived from 467 borehole records and 539 constraining points extracted from British Geological Survey mapping. The depth to the base of the Holocene sequence ranges from −30.46 mOD to +7.61 mOD. Key morphological features identified include: a 5 km wide trough trending west–east throughout the area; isolated peaks of pre-Holocene sediment reaching to −3 mOD within the centre of this trough and; a series of steep topographical lows. As well as providing a means of assessing palaeomorphology, reconstruction of the region’s early Holocene topography can be used to inform research investigating the available sediment prism, palaeocoastline positions and possible responses to future climate change

The origins and fill histories of buried palaeo valley systems and overdeepened bedrock troughs in the Midland Valley of Scotland

‘Buried’ palaeo valley systems have been identified widely beneath lowland parts of the UK and the North Sea. Their concealed occurrence can have significant implications for groundwater, hydrocarbon and geothermal resources. Equally the links between geometry and the sediments that infill them are poorly understood but provide important clues to their genesis and applied properties. In the Midland Valley of Scotland ‘buried valleys’ of over 100 m depth have been recorded yet have typically only been studied in isolation. Utilising a digital dataset of over 100,000 boreholes which penetrates the full thickness of Quaternary deposits in the Midland Valley of Scotland, 18 buried palaeo valleys where identified, ranging from 5-36 km in length and 24-162 m in depth. Geometric analysis has revealed four distinct valley morphologies, some of which appear to cross cut each other with the deepest features aligning east-west. These east-west features align with the ice flow during the Late Devensian glaciation (c. 30-17 ka). The shallower features, appear more aligned to ice flow direction during ice sheet retreat, and were therefore probably incised under more restricted ice-sheet configurations. Analysis of the fills shows they also vary greatly. The shallower restricted ice sheet features are filled with between 52-82% diamicton. However, the large, east-west features have more heterogeneous fills, which are either dominated by clay (29-44%) or sand (6-22%). The presence of localised sand and gravels that pre-date the advance of the Main Late Devensian ice sheet confirms that the east-west features have been active over several glaciations, and that the fill may not be linked to the processes that cut the valley. All the features that sit below the Holocene marine incursion limits have more heterolithic fills than those above it suggesting that they existed as valleys after ice retreat with remaining accommodation space infilled during a final stage of marine inundation

Morphology is not always useful for diagnosis, and that’s ok: Species hypotheses should not be bound to a class of data. Reply to Brown and Gibbons (S Afr J Sci. 2022;118(9/10), Art. #12590)

This paper serves as a reply to the Commentary by Brown and Gibbons (S Afr J Sci. 2022;118(9/10), Art. #12590) on our recently published paper on systematics of the moon jellyfish genus Aurelia (Lawley et al. PeerJ 2021;9, e11954)). We emphasise that we are not advocating for the routine use of molecular data alone in taxonomic diagnoses, rather that it is a valid approach in cases where, after detailed analyses, morphological features are shown to be unreliable

The importance of molecular characters when morphological variability hinders diagnosability: systematics of the moon jellyfish genus Aurelia (Cnidaria: Scyphozoa)

Cryptic species have been detected across Metazoa, and while no apparent morphological features distinguish them, it should not impede taxonomists from formal descriptions. We accepted this challenge for the jellyfish genus Aurelia, which has a long and confusing taxonomic history. We demonstrate that morphological variability in Aurelia medusae overlaps across very distant geographic localities. Even though some morphological features seem responsible for most of the variation, regional geographic patterns of dissimilarities are lacking. This is further emphasized by morphological differences found when comparing lab-cultured Aurelia coerulea medusae with the diagnostic features in its recent redescription. Previous studies have also highlighted the difficulties in distinguishing Aurelia polyps and ephyrae, and their morphological plasticity. Therefore, mostly based on genetic data, we recognize 28 species of Aurelia, of which seven were already described, 10 are formally described herein, four are resurrected and seven remain undescribed. We present diagnostic genetic characters for all species and designate type materials for newly described and some resurrected species. Recognizing moon jellyfish diversity with formal names is vital for conservation efforts and other studies. This work clarifies the practical implications of molecular genetic data as diagnostic characters, and sheds light on the patterns and processes that generate crypsis.Fil: Lawley, Jonathan W.. Universidade de Sao Paulo; Brasil. Griffith University; AustraliaFil: Gamero Mora, Edgar. Universidade de Sao Paulo; BrasilFil: Maronna, Maximiliano Manuel. Universidade de Sao Paulo; BrasilFil: Chiaverano, Luciano Martin. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata; Argentina. Instituto Nacional de Investigaciones y Desarrollo Pesquero; ArgentinaFil: Stampar, Sérgio N.. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Hopcroft, Russell R.. University of Alaska; Estados UnidosFil: Collins, Allen G.. National Museum of Natural History; Estados UnidosFil: Morandini, André C.. Universidade de Sao Paulo; Brasi

Role of Delta-like 4 in Jagged1-induced tumour angiogenesis and tumour growth.

Delta-like 4 (DLL4) and Jagged1 (JAG1) are two key Notch ligands implicated in tumour angiogenesis. They were shown to have opposite effects on mouse retinal and adult regenerative angiogenesis. In tumours, both ligands are upregulated but their relative effects and interactions in tumour biology, particularly in tumour response to therapeutic intervention are unclear. Here we demonstrate that DLL4 and JAG1 displayed equal potency in stimulating Notch target genes in HMEC-1 endothelial cells but had opposing effects on sprouting angiogenesis in vitro. Mouse DLL4 or JAG1 expressed in glioblastoma cells decreased tumour cell proliferation in vitro but promoted tumour growth in vivo. mDLL4-expressing tumours showed fewer but larger vessels whereas mJAG1-tumours produced more vessels. In both tumour types pericyte coverage was decreased but the vessels were more perfused. Both ligands increased tumour resistance towards anti-VEGF therapy but the resistance was higher in mDLL4-tumours versus mJAG1-tumours. However, their sensitivity to the therapy was restored by blocking Notch signalling with dibenzazepine. Importantly, anti-DLL4 antibody blocked the effect of JAG1 on tumour growth and increased vessel branching in vivo. The mechanism behind the differential responsiveness was due to a positive feedback loop for DLL4-Notch signalling, rendering DLL4 more dominant in activating Notch signalling in the tumour microenvironment. We concluded that DLL4 and JAG1 promote tumour growth by modulating tumour angiogenesis via different mechanisms. JAG1 is not antagonistic but utilises DLL4 in tumour angiogenesis. The results suggest that anti-JAG1 therapy should be explored in conjunction with anti-DLL4 treatment in developing anti-Notch therapies in clinics

Establishing What Constitutes a Healthy Human Gut Microbiome: State of the Science, Regulatory Considerations, and Future Directions.

On December 17, 2018, the North American branch of the International Life Sciences Institute (ILSI North America) convened a workshop "Can We Begin to Define a Healthy Gut Microbiome Through Quantifiable Characteristics?" with >40 invited academic, government, and industry experts in Washington, DC. The workshop objectives were to 1) develop a collective expert assessment of the state of the evidence on the human gut microbiome and associated human health benefits, 2) see if there was sufficient evidence to establish measurable gut microbiome characteristics that could serve as indicators of "health," 3) identify short- and long-term research needs to fully characterize healthy gut microbiome-host relationships, and 4) publish the findings. Conclusions were as follows: 1) mechanistic links of specific changes in gut microbiome structure with function or markers of human health are not yet established; 2) it is not established if dysbiosis is a cause, consequence, or both of changes in human gut epithelial function and disease; 3) microbiome communities are highly individualized, show a high degree of interindividual variation to perturbation, and tend to be stable over years; 4) the complexity of microbiome-host interactions requires a comprehensive, multidisciplinary research agenda to elucidate relationships between gut microbiome and host health; 5) biomarkers and/or surrogate indicators of host function and pathogenic processes based on the microbiome need to be determined and validated, along with normal ranges, using approaches similar to those used to establish biomarkers and/or surrogate indicators based on host metabolic phenotypes; 6) future studies measuring responses to an exposure or intervention need to combine validated microbiome-related biomarkers and/or surrogate indicators with multiomics characterization of the microbiome; and 7) because static genetic sampling misses important short- and long-term microbiome-related dynamic changes to host health, future studies must be powered to account for inter- and intraindividual variation and should use repeated measures within individuals

Hypervirulent Clostridium difficile PCR-Ribotypes Exhibit Resistance to Widely Used Disinfectants

The increased prevalence of Clostridium difficile infection (CDI) has coincided with enhanced transmissibility and severity of disease, which is often linked to two distinct clonal lineages designated PCR-ribotype 027 and 017 responsible for CDI outbreaks in the USA, Europe and Asia. We assessed sporulation and susceptibility of three PCR-ribotypes; 012, 017 and 027 to four classes of disinfectants; chlorine releasing agents (CRAs), peroxygens, quaternary ammonium compounds (QAC) and biguanides. The 017 PCR-ribotype, showed the highest sporulation frequency under these test conditions. The oxidizing biocides and CRAs were the most efficacious in decontamination of C. difficile vegetative cells and spores, the efficacy of the CRAs were concentration dependent irrespective of PCR-ribotype. However, there were differences observed in the susceptibility of the PCR-ribotypes, independent of the concentrations tested for Virkon®, Newgenn®, Proceine 40® and Hibiscrub®. Whereas, for Steri7® and Biocleanse® the difference observed between the disinfectants were dependent on both PCR-ribotype and concentration. The oxidizing agent Perasafe® was consistently efficacious across all three PCR ribotypes at varying concentrations; with a consistent five Log10 reduction in spore titre. The PCR-ribotype and concentration dependent differences in the efficacy of the disinfectants in this study indicate that disinfectant choice is a factor for llimiting the survival and transmission of C. difficile spores in healthcare settings