Reversible Band Gap Engineering in Carbon Nanotubes by Radial Deformation

We present a systematic analysis of the effect of radial deformation on the atomic and electronic structure of zigzag and armchair single wall carbon nanotubes using the first principle plane wave method. The nanotubes were deformed by applying a radial strain, which distorts the circular cross section to an elliptical one. The atomic structure of the nanotubes under this strain are fully optimized, and the electronic structure is calculated self-consistently to determine the response of individual bands to the radial deformation. The band gap of the insulating tube is closed and eventually an insulator-metal transition sets in by the radial strain which is in the elastic range. Using this property a multiple quantum well structure with tunable and reversible electronic structure is formed on an individual nanotube and its band-lineup is determined from first-principles. The elastic energy due to the radial deformation and elastic constants are calculated and compared with classical theories.Comment: To be appear in Phys. Rev. B, Apr 15, 200

Identification of a Czc-like operon of the periodontal pathobiont Porphyromonas gingivalis involved in metal ion efflux

Objective The study aimed to investigate the role of the PGN2012 gene of the periodontitis contributing pathobiont Porphyromonas gingivalis. PGN2012 is a homolgue of TolC and is a gene our group previously showed was overexpressed in hyperinvasive cells. Methods The study used a combination of bioinformatics, knockout mutagenesis, growth experiments, biofilm assays and human cell invation assays to investigate PGN2012 function. Results Bioinformatics identified that PGN2012 is part of one of four TolC containing gene loci in P. gingivalis that we predicted may encode a metal resistance RND family tripartite pump, similar to those present in other Gram-negative bacteria, but which are not well understood in anaerobic bacteria. A ΔPGN2012 deletion displayed slightly reduced growth in liquid culture but did not effect biofilm formation or human cell invasion. When metal ions were included in the medium the mutant displayed significantly increased sensitivity to the divalent metal ions Zn2+ (500 μM), Co2+ (2 mM), and Cd2+(0.1 mM) but not Cu2+. Conclusions We propose to rename the PGN2012-2014 genes czcCBA, which we suggest plays a role in intracellular stress resistance where zinc is often employed by host cells in antibacterial defence with implications for chronic infection in humans

Validation of revised methane and nitrous oxide profiles from MIPAS-ENVISAT

Improved versions of CH4 and N2O profiles derived at the Institute of Meteorology and Climate Research and Instituto de Astrofísica de Andalucía (CSIC) from spectra measured by the Michelson Interferometer for Passive Atmospheric Sounding (MIPAS) have become available. For the MIPAS full-resolution period (2002-2004) these are V5H-CH4-21 and V5H-N2O-21 and for the reduced-resolution period (2005-2012) these are V5R-CH4-224, V5R-CH4-225, V5R-N2O-224 and V5R-N2O-225. Here, we compare CH4 profiles to those measured by the Fourier Transform Spectrometer on board of the Atmospheric Chemistry Experiment (ACE-FTS), the HALogen Occultation Experiment (HALOE) and the Scanning Imaging Absorption Spectrometer for Atmospheric CHartographY (SCIAMACHY), to the Global Cooperative Air Sampling Network (GCASN) surface data. We find the MIPAS CH4 profiles below 25 km to be typically higher of the order of 0.1 ppmv for both measurement periods. N2O profiles are compared to those measured by ACE-FTS, the Microwave Limb Sounder on board of the Aura satellite (Aura-MLS) and the Sub-millimetre Radiometer on board of the Odin satellite (Odin-SMR) as well as to the Halocarbons and other Atmospheric Trace Species Group (HATS) surface data. The mixing ratios of the satellite instruments agree well with each other for the full-resolution period. For the reduced-resolution period, MIPAS produces similar values as Odin-SMR, but higher values than ACE-FTS and HATS. Below 27 km, the MIPAS profiles show higher mixing ratios than Aura-MLS, and lower values between 27 and 41 km. Cross-comparisons between the two MIPAS measurement periods show that they generally agree quite well, but, especially for CH4, the reduced-resolution period seems to produce slightly higher mixing ratios than the full-resolution data. © Author(s) 2016

New insights into the genetic etiology of Alzheimer's disease and related dementias

Characterization of the genetic landscape of Alzheimer's disease (AD) and related dementias (ADD) provides a unique opportunity for a better understanding of the associated pathophysiological processes. We performed a two-stage genome-wide association study totaling 111,326 clinically diagnosed/'proxy' AD cases and 677,663 controls. We found 75 risk loci, of which 42 were new at the time of analysis. Pathway enrichment analyses confirmed the involvement of amyloid/tau pathways and highlighted microglia implication. Gene prioritization in the new loci identified 31 genes that were suggestive of new genetically associated processes, including the tumor necrosis factor alpha pathway through the linear ubiquitin chain assembly complex. We also built a new genetic risk score associated with the risk of future AD/dementia or progression from mild cognitive impairment to AD/dementia. The improvement in prediction led to a 1.6- to 1.9-fold increase in AD risk from the lowest to the highest decile, in addition to effects of age and the APOE ε4 allele

Mapeamento das formas do relevo para estimativa de custos de fertilização em cana-de-açúcar

A modelagem matemática associada ao conhecimento da variabilidade dos atributos do solo e mapeamento das formas do relevo pode auxiliar no manejo da fertilidade do solo em usinas sucroalcooleiras. O presente trabalho teve como objetivo avaliar o uso da geoestatística e da modelagem matemática na estimativa de custos de fertilização, em diferentes formas do relevo. Em uma área de 200 ha, foram identificadas duas formas de relevo, uma côncava e outra convexa, sendo os solos coletados nos pontos de cruzamento de uma malha, com intervalos regulares de 50 m, perfazendo um total de 623 pontos. As amostras foram submetidas a análises químicas, e, posteriormente, os dados foram avaliados por meio da estatística descritiva, geoestatística e modelagem matemática. Os resultados mostraram que, quando as formas do relevo são incorporadas às análises geoestatística e de modelagem matemática, ocorre aumento na eficiência de aplicação do calcário, fósforo e potássio no solo.The mathematical model associated with the knowledge of the soil variability properties and mapping the relief forms can assist in the management of soil fertility in sugarcane companies. This study aimed to evaluate the use of geostatistics and mathematical modeling in the fertilization expense estimative in different relief forms. In an area of 200 ha has been identified two relief forms , one concave and one convex, and the soils collected was at the crossing points of a grid with intervals of 50 m, a total of 623 points. The samples were subjected to chemical analysis and subsequently the data were analyzed using descriptive statistics, geostatistics and mathematical modeling. The results showed that when the relief forms are incorporated into the geostatistical analysis and mathematical modeling, there is an increase in the efficiency of limestone, phosphorus and potassium application in the soil

Identification and reconstruction of low-energy electrons in the ProtoDUNE-SP detector

International audienceMeasurements of electrons from νe interactions are crucial for the Deep Underground Neutrino Experiment (DUNE) neutrino oscillation program, as well as searches for physics beyond the standard model, supernova neutrino detection, and solar neutrino measurements. This article describes the selection and reconstruction of low-energy (Michel) electrons in the ProtoDUNE-SP detector. ProtoDUNE-SP is one of the prototypes for the DUNE far detector, built and operated at CERN as a charged particle test beam experiment. A sample of low-energy electrons produced by the decay of cosmic muons is selected with a purity of 95%. This sample is used to calibrate the low-energy electron energy scale with two techniques. An electron energy calibration based on a cosmic ray muon sample uses calibration constants derived from measured and simulated cosmic ray muon events. Another calibration technique makes use of the theoretically well-understood Michel electron energy spectrum to convert reconstructed charge to electron energy. In addition, the effects of detector response to low-energy electron energy scale and its resolution including readout electronics threshold effects are quantified. Finally, the relation between the theoretical and reconstructed low-energy electron energy spectrum is derived and the energy resolution is characterized. The low-energy electron selection presented here accounts for about 75% of the total electron deposited energy. After the addition of missing energy using a Monte Carlo simulation, the energy resolution improves from about 40% to 25% at 50 MeV. These results are used to validate the expected capabilities of the DUNE far detector to reconstruct low-energy electrons