The Structure of Clusters with Bimodal Distributions of Galaxy Radial Velocities. I. A1035

The structure of the A1035 cluster of galaxies (10h32m +40d13', cz ~ 22000 km/s), which exhibits a bimodal distribution of galaxy radial velocities (\Delta V\approx 3000 km/s), is analyzed using three methods of determining the relative distances to clusters from early-type galaxies: the Kormendy relation corrected for the dependence of residuals on galaxy magnitude, the photometric plane, and the fundamental plane. We use the data obtained with the 1-m telescope of the Special Astrophysical Observatory of the Russian Academy of Sciences and SDSS (DR5) data to show that A1035 consists of two gravitationally unbound independent clusters. These clusters with the velocity dispersions of 566 km/s and 610 km/s and masses within R_200 equal to 2.7 10^14 and 3.5 10^14 M_sun, respectively, obey the Hubble law.Comment: 13 pages, 3 tables, 6 figure

Multimodality of rich clusters from the SDSS DR8 within the supercluster-void network

We study the relations between the multimodality of galaxy clusters drawn from the SDSS DR8 and the environment where they reside. As cluster environment we consider the global luminosity density field, supercluster membership, and supercluster morphology. We use 3D normal mixture modelling, the Dressler-Shectman test, and the peculiar velocity of cluster main galaxies as signatures of multimodality of clusters. We calculate the luminosity density field to study the environmental densities around clusters, and to find superclusters where clusters reside. We determine the morphology of superclusters with the Minkowski functionals and compare the properties of clusters in superclusters of different morphology. We apply principal component analysis to study the relations between the multimodality parametres of clusters and their environment simultaneously. We find that multimodal clusters reside in higher density environment than unimodal clusters. Clusters in superclusters have higher probability to have substructure than isolated clusters. The superclusters can be divided into two main morphological types, spiders and filaments. Clusters in superclusters of spider morphology have higher probabilities to have substructure and larger peculiar velocities of their main galaxies than clusters in superclusters of filament morphology. The most luminous clusters are located in the high-density cores of rich superclusters. Five of seven most luminous clusters, and five of seven most multimodal clusters reside in spider-type superclusters; four of seven most unimodal clusters reside in filament-type superclusters. Our study shows the importance of the role of superclusters as high density environment which affects the properties of galaxy systems in them.Comment: 16 pages, 12 figures, 2 online tables, accepted for publication in Astronomy and Astrophysic

SDSS DR7 superclusters. Morphology

We study the morphology of a set of superclusters drawn from the SDSS DR7. We calculate the luminosity density field to determine superclusters from a flux- limited sample of galaxies from SDSS DR7, and select superclusters with 300 and more galaxies for our study. The morphology of superclusters is described with the fourth Minkowski functional V3, the morphological signature (the curve in the shapefinder's K1-K2 plane) and the shape parameter (the ratio of the shapefinders K1/K2). We investigate the supercluster sample using multidimensional normal mixture modelling, and use Abell clusters to identify our superclusters with known superclusters and to study the large-scale distribution of superclusters. The superclusters in our sample form three chains of superclusters; one of them is the Sloan Great Wall. Most superclusters have filament-like overall shapes. Superclusters can be divided into two sets; more elongated superclusters are more luminous, richer, have larger diameters, and a more complex fine structure than less elongated superclusters. The fine structure of superclusters can be divided into four main morphological types: spiders, multispiders, filaments, and multibranching filaments. We present the 2D and 3D distribution of galaxies and rich groups, the fourth Minkowski functional, and the morphological signature for all superclusters. Widely different morphologies of superclusters show that their evolution has been dissimilar. A study of a larger sample of superclusters from observations and simulations is needed to understand the morphological variety of superclusters and the possible connection between the morphology of superclusters and their large-scale environment.Comment: Comments: 20 pages, 18 figures, accepted for publication in Astronomy and Astrophysic

Tunka-Rex Virtual Observatory

Tunka-Rex (Tunka Radio Extension) was a detector for ultra-high energy cosmic rays measuring radio emission for air showers in the frequency band of 30-80 MHz, operating in 2010s. It provided an experimental proof that sparse radio arrays can be a cost-effective technique to measure the depth of shower maximum with resolutions competitive to optical detectors. After the decommissioning of Tunka-Rex, as last phase of its lifecycle and following the FAIR (Findability — Accessibility — Interoperability — Reuse) principles, we publish the data and software under free licenses in the frame of the TRVO (Tunka-Rex Virtual Observatory), which is hosted at KIT under the partnership with the KCDC and GRADLCI projects. We present the main features of TRVO, its interface and give an overview of projects, which benefit from its open software and data

Targeted metatranscriptomics of compost derived consortia reveals a GH11 exerting an unusual exo-1,4-β-xylanase activity

Background: Using globally abundant crop residues as a carbon source for energy generation and renewable chemicals production stands out as a promising solution to reduce current dependency on fossil fuels. In nature, such as in compost habitats, microbial communities efficiently degrade the available plant biomass using a diverse set of synergistic enzymes. However, deconstruction of lignocellulose remains a challenge for industry due to recalcitrant nature of the substrate and the inefficiency of the enzyme systems available, making the economic production of lignocellulosic biofuels difficult. Metatranscriptomic studies of microbial communities can unveil the metabolic functions employed by lignocellulolytic consortia and identify new biocatalysts that could improve industrial lignocellulose conversion. Results: In this study, a microbial community from compost was grown in minimal medium with sugarcane bagasse sugarcane bagasse as the sole carbon source. Solid-state nuclear magnetic resonance was used to monitor lignocellulose degradation; analysis of metatranscriptomic data led to the selection and functional characterization of several target genes, revealing the first glycoside hydrolase from Carbohydrate Active Enzyme family 11 with exo-1,4-β-xylanase activity. The xylanase crystal structure was resolved at 1.76 Å revealing the structural basis of exo-xylanase activity. Supplementation of a commercial cellulolytic enzyme cocktail with the xylanase showed improvement in Avicel hydrolysis in the presence of inhibitory xylooligomers. Conclusions: This study demonstrated that composting microbiomes continue to be an excellent source of biotechnologically important enzymes by unveiling the diversity of enzymes involved in in situ lignocellulose degradation

Genomic characterization of the most barotolerant Listeria monocytogenes RO15 strain compared to reference strains used to evaluate food high pressure processing

BackgroundHigh pressure processing (HPP; i.e. 100-600MPa pressure depending on product) is a non-thermal preservation technique adopted by the food industry to decrease significantly foodborne pathogens, including Listeria monocytogenes, from food. However, susceptibility towards pressure differs among diverse strains of L. monocytogenes and it is unclear if this is due to their intrinsic characteristics related to genomic content. Here, we tested the barotolerance of 10 different L. monocytogenes strains, from food and food processing environments and widely used reference strains including clinical isolate, to pressure treatments with 400 and 600MPa. Genome sequencing and genome comparison of the tested L. monocytogenes strains were performed to investigate the relation between genomic profile and pressure tolerance.ResultsNone of the tested strains were tolerant to 600MPa. A reduction of more than 5 log(10) was observed for all strains after 1min 600MPa pressure treatment. L. monocytogenes strain RO15 showed no significant reduction in viable cell counts after 400MPa for 1min and was therefore defined as barotolerant. Genome analysis of so far unsequenced L. monocytogenes strain RO15, 2HF33, MB5, AB199, AB120, C7, and RO4 allowed us to compare the gene content of all strains tested. This revealed that the three most pressure tolerant strains had more than one CRISPR system with self-targeting spacers. Furthermore, several anti-CRISPR genes were detected in these strains. Pan-genome analysis showed that 10 prophage genes were significantly associated with the three most barotolerant strains.ConclusionsL. monocytogenes strain RO15 was the most pressure tolerant among the selected strains. Genome comparison suggests that there might be a relationship between prophages and pressure tolerance in L. monocytogenes.Peer reviewe