Molecular networks of human muscle adaptation to exercise and age

Physical activity and molecular ageing presumably interact to precipitate musculoskeletal decline in humans with age. Herein, we have delineated molecular networks for these two major components of sarcopenic risk using multiple independent clinical cohorts. We generated genome-wide transcript profiles from individuals (n = 44) who then undertook 20 weeks of supervised resistance-exercise training (RET). Expectedly, our subjects exhibited a marked range of hypertrophic responses (3% to +28%), and when applying Ingenuity Pathway Analysis (IPA) up-stream analysis to ~580 genes that co-varied with gain in lean mass, we identified rapamycin (mTOR) signaling associating with growth (P = 1.4×10−30). Paradoxically, those displaying most hypertrophy exhibited an inhibited mTOR activation signature, including the striking down-regulation of 70 rRNAs. Differential analysis found networks mimicking developmental processes (activated all-trans-retinoic acid (ATRA, Z-score = 4.5; P = 6×10−13) and inhibited aryl-hydrocarbon receptor signaling (AhR, Z-score = −2.3; P = 3×10−7)) with RET. Intriguingly, as ATRA and AhR gene-sets were also a feature of endurance exercise training (EET), they appear to represent “generic” physical activity responsive gene-networks. For age, we found that differential gene-expression methods do not produce consistent molecular differences between young versus old individuals. Instead, utilizing two independent cohorts (n = 45 and n = 52), with a continuum of subject ages (18–78 y), the first reproducible set of age-related transcripts in human muscle was identified. This analysis identified ~500 genes highly enriched in post-transcriptional processes (P = 1×10−6) and with negligible links to the aforementioned generic exercise regulated gene-sets and some overlap with ribosomal genes. The RNA signatures from multiple compounds all targeting serotonin, DNA topoisomerase antagonism, and RXR activation were significantly related to the muscle age-related genes. Finally, a number of specific chromosomal loci, including 1q12 and 13q21, contributed by more than chance to the age-related gene list (P = 0.01–0.005), implying possible epigenetic events. We conclude that human muscle age-related molecular processes appear distinct from the processes regulated by those of physical activity

The GEOTRACES Intermediate Data Product 2014

The GEOTRACES Intermediate Data Product 2014 (IDP2014) is the first publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2013. It consists of two parts: (1) a compilation of digital data for more than 200 trace elements and isotopes (TEIs) as well as classical hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing a strongly inter-linked on-line atlas including more than 300 section plots and 90 animated 3D scenes. The IDP2014 covers the Atlantic, Arctic, and Indian oceans, exhibiting highest data density in the Atlantic. The TEI data in the IDP2014 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at cross-over stations. The digital data are provided in several formats, including ASCII spreadsheet, Excel spreadsheet, netCDF, and Ocean Data View collection. In addition to the actual data values the IDP2014 also contains data quality flags and 1-? data error values where available. Quality flags and error values are useful for data filtering. Metadata about data originators, analytical methods and original publications related to the data are linked to the data in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2014 data providing section plots and a new kind of animated 3D scenes. The basin-wide 3D scenes allow for viewing of data from many cruises at the same time, thereby providing quick overviews of large-scale tracer distributions. In addition, the 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of observed tracer plumes, as well as for making inferences about controlling processes

The legitimacy of informal settlements in Balkan States

This article analyzes media representations of squatters and their settlements in five case studies in the Western Balkans: the capitals of Albania, Bosnia-Herzegovina, Kosovo, Northern Macedonia, and Serbia, drawing on a database of 300 newspaper articles, dating from 1990 to 2015. The analysis reveals eight themes. The press has: (1) questioned the state’s legitimacy to govern, (2) characterized squatters as citizens; (3) sympathized with squatters; (4) de-legitimized controls on informal housing and the classes in power; (5) expressed resentment towards powerful elites which have also engaged in informal construction; (6) engaged in nostalgic reminiscing about the rule of law under socialism; (7) engaged in exclusionary discourse towards squatters; and (8) criminalized squatters. Given the region’s socialist legacy of egalitarianism, negative representations of squatters have been mostly symbolic and they have not significantly diminished their chances of bettering their lives in the city. Building “informality” is clearly a social construct, and its representations depend largely on the class, size, and political clout of the social groups engaged in informal construction

Rare earth elements in the Pacific and Atlantic Oceans

The first profiles of Pr, Tb, Ho, Tm and Lu in the Pacific Ocean, as well as profiles of La, Ce, Nd, Sm, Eu, Gd and Yb, are reported. Concentrations of REE (except Ce) in the deep water are two to three times higher than those observed in the deep Atlantic Ocean. Surface water concentrations are typically lower than in the Atlantic Ocean, especially for the heavier elements Ho, Tm, Yb and Lu. Cerium is strongly depleted in the Pacific water column, but less so in the oxygen minimum zone. The distribution of the REE group is consistent with two simultaneous processes: (1) cycling similar to that of opal and calcium carbonate, and (2) adsorptive scavenging by settling particles and possibly by uptake at ocean boundaries. However, the first process can probably not be sustained by the low REE contents of shells, unless additional adsorption on surfaces is invoked. The second process, adsorptive scavenging, largely controls the oceanic distribution and typical seawater pattern of the rare earths.