Storm events alter marine snow fluxes in stratified marine environments

Marine snow is an important part of the biological pump and marine food web, and although previous research has provided a thorough understanding of the underlying mechanisms of marine snow dynamics in general, there is still a knowledge gap concerning extreme conditions, such as storm events. Storms are predicted to increase in magnitude and frequency in the future, and could potentially have a large impact on marine snow dynamics. For these reasons, we assessed the effects of storm events on marine snow dynamics in the Baltic Sea, an area chosen due to its well-studied and stable stratified conditions outside of meteorologically extreme events. The combination of in-situ imaging and biogeochemical environmental data from three different years facilitates an assessment of storm event impacts, while simultaneously excluding the possibility that patterns in particle distribution and abundances were due to other environmental influences. The results show that extreme meteorological events such as storms can increase the abundance of marine snow in stratified marine environments by a factor of 10 or more. The particles are distributed more widely and are larger, brighter, rounder and less complexly shaped. In non-extreme conditions, particles have been observed to deposit along the density gradients in thin-layer aggregations. This study indicates that storms can episodically disrupt these formations, thereby altering vertical flux and export potentials across stratification boundaries. In addition, we observed that marine snow abundances are drastically higher in the aftermath of storm events than under calm conditions, potentially due to the disaggregation of larger particles and lateral import of resuspended matter from shallower areas. In light of the increased frequency and magnitude of storms in the future due to climate change, our findings indicate that marine snow dynamics in stratified environments might be altered permanently

Spinning Particles, Braid Groups and Solitons

We develop general techniques for computing the fundamental group of the configuration space of $n$ identical particles, possessing a generic internal structure, moving on a manifold $M$. This group generalizes the $n$-string braid group of $M$ which is the relevant object for structureless particles. In particular, we compute these generalized braid groups for particles with an internal spin degree of freedom on an arbitrary $M$. A study of their unitary representations allows us to determine the available spectrum of spin and statistics on $M$ in a certain class of quantum theories. One interesting result is that half-integral spin quantizations are obtained on certain manifolds having an obstruction to an ordinary spin structure. We also compare our results to corresponding ones for topological solitons in $O(d+1)$-invariant nonlinear sigma models in $(d+1)$-dimensions, generalizing recent studies in two spatial dimensions. Finally, we prove that there exists a general scalar quantum theory yielding half-integral spin for particles (or $O(d+1)$ solitons) on a closed, orientable manifold $M$ if and only if $M$ possesses a ${\rm spin}_c$ structure.Comment: harvmac, 34 pages, HUTP-93/A037; UICHEP-TH/93-18; BUHEP-93-2

DNA repair systems and the pathogenesis of Mycobacterium tuberculosis: varying activities at different stages of infection

Mycobacteria, including most of all MTB (Mycobacterium tuberculosis), cause pathogenic infections in humans and, during the infectious process, are exposed to a range of environmental insults, including the host's immune response. From the moment MTB is exhaled by infected individuals, through an active and latent phase in the body of the new host, until the time they reach the reactivation stage, MTB is exposed to many types of DNA-damaging agents. Like all cellular organisms, MTB has efficient DNA repair systems, and these are believed to play essential roles in mycobacterial pathogenesis. As different stages of infection have great variation in the conditions in which mycobacteria reside, it is possible that different repair systems are essential for progression to specific phases of infection. MTB possesses homologues of DNA repair systems that are found widely in other species of bacteria, such as nucleotide excision repair, base excision repair and repair by homologous recombination. MTB also possesses a system for non-homologous end-joining of DNA breaks, which appears to be widespread in prokaryotes, although its presence is sporadic within different species within a genus. However, MTB does not possess homologues of the typical mismatch repair system that is found in most bacteria. Recent studies have demonstrated that DNA repair genes are expressed differentially at each stage of infection. In the present review, we focus on different DNA repair systems from mycobacteria and identify questions that remain in our understanding of how these systems have an impact upon the infection processes of these important pathogens

Symmetry Energy I: Semi-Infinite Matter

Energy for a nucleus is considered in macroscopic limit, in terms of nucleon numbers. Further considered for a nuclear system is the Hohenberg-Kohn energy functional, in terms of proton and neutron densities. Finally, Skyrme-Hartree-Fock calculations are carried out for a half-infinite particle-stable nuclear-matter. In each case, the attention is focused on the role of neutron-proton asymmetry and on the nuclear symmetry energy. We extend the considerations on the symmetry term from an energy formula to the respective term in the Hohenberg-Kohn functional. We show, in particular, that in the limit of an analytic functional, and subject to possible Coulomb corrections, it is possible to construct isoscalar and isovector densities out of the proton and neutron densities, that retain a universal relation to each other, approximately independent of asymmetry. In the so-called local approximation, the isovector density is inversely proportional to the symmetry energy in uniform matter at the local isoscalar density. Generalized symmetry coefficient of a nuclear system is related, in the analytic limit of a functional, to an integral of the isovector density. We test the relations, inferred from the Hohenberg-Kohn functional, in the Skyrme-Hartree-Fock calculations of half-infinite matter. Within the calculations, we obtain surface symmetry coefficients and parameters characterizing the densities, for the majority of Skyrme parameterizations proposed in the literature. The volume-to-surface symmetry-coefficient ratio and the displacement of nuclear isovector relative to isoscalar surfaces both strongly increase as the slope of symmetry energy in the vicinity of normal density increases.Comment: 87 pages, 18 figures; discussion of Kohn-Sham method added, comparison to results in literature broadene

Sasa borealis leaves extract improves insulin resistance by modulating inflammatory cytokine secretion in high fat diet-induced obese C57/BL6J mice

Obesity is considered a mild inflammatory state, and the secretion of inflammation-related cytokines rises as adipose tissue expands. Inflammatory cytokines, including tumor necrosis factor-α (TNF-α), interlukin 6 (IL-6) and monocyte-chemoattractant protein 1 (MCP-1), are modulated by adipose tissue and known to play an important role in insulin resistance which is the common characteristics of obesity related disorders. In this study we analyzed the effects of Sasa borealis leaves extract on inflammatory cytokines and insulin resistance in diet induced obese C57/BL6J mice. The obese state was induced by a high fat diet for 20 weeks and then the mice were divided into two groups; obese control group (OBC, n = 7) and experimental group (OB-SBE, n = 7). The OBC group was fed a high fat diet and the OB-SBE group was fed a high fat diet containing 5% Sasa borealis leaves extract (SBE) for 12 weeks. We also used mice fed a standard diet as a normal control (NC, n = 7). The body weight and adipose tissue weight in the OB group were significantly higher than those in the NC group. The effects of the high fat diet were reduced by SBE treatments, and the body weight and adipose tissue deposition in the OB-SBE group were significantly decreased compared to the OBC group. The OBC group showed higher serum glucose and insulin levels which resulted in a significant increase of incremental area under the curve (IAUC) and HOMA-IR than the NC group. Also, serum leptin, TNF-α, and IL-6 levels were significantly higher in the OBC group than in the NC group. In contrast, the OB-SBE group showed a reversal in the metabolic defects, including a decrease in glucose, insulin, IAUC, HOMA-IR, TNF-α, IL-6 and leptin levels. These results suggest that BSE can suppress increased weight gain and/or fat deposition induced by a high fat diet and theses effects are accompanied by modulation of the inflammatory cytokines, TNF-α and IL-6 secretion resulting in improved insulin resistance

Status of Nb-Pb Superconducting RF-Gun Cavities

We report on the progress and status of an electron RFgun made of two superconductors: niobium and lead [1]. The presented design combines the advantages of the RF performance of bulk niobium superconducting cavities and the reasonably high quantum efficiency of lead. The design of RF-gun and performance of 3 test cavities without and with the emitting lead spot are reported in this contribution. Measured quantum efficiency for lead at 2K is presented briefly. More details are reported in [9]

Hepatocytic expression of human sodium-taurocholate cotransporting polypeptide enables hepatitis B virus infection of macaques

Hepatitis B virus (HBV) is a major global health concern, and the development of curative therapeutics is urgently needed. Such efforts are impeded by the lack of a physiologically relevant, pre-clinical animal model of HBV infection. Here, we report that expression of the HBV entry receptor, human sodium-taurocholate cotransporting polypeptide (hNTCP), on macaque primary hepatocytes facilitates HBV infection in vitro, where all replicative intermediates including covalently closed circular DNA (cccDNA) are present. Furthermore, viral vector-mediated expression of hNTCP on hepatocytes in vivo renders rhesus macaques permissive to HBV infection. These in vivo macaque HBV infections are characterized by longitudinal HBV DNA in serum, and detection of HBV DNA, RNA, and HBV core antigen (HBcAg) in hepatocytes. Together, these results show that expressing hNTCP on macaque hepatocytes renders them susceptible to HBV infection, thereby establishing a physiologically relevant model of HBV infection to study immune clearance and test therapeutic and curative approaches

Homozygous Deletion of Six Olfactory Receptor Genes in a Subset of Individuals with Beta-Thalassemia

Progress in the functional studies of human olfactory receptors has been largely hampered by the lack of a reliable experimental model system. Although transgenic approaches in mice could characterize the function of individual olfactory receptors, the presence of over 300 functional genes in the human genome becomes a daunting task. Thus, the characterization of individuals with a genetic susceptibility to altered olfaction coupled with the absence of particular olfactory receptor genes will allow phenotype/genotype correlations and vindicate the function of specific olfactory receptors with their cognate ligands. We characterized a 118 kb β-globin deletion and found that its 3′ end breakpoint extends to the neighboring olfactory receptor region downstream of the β-globin gene cluster. This deletion encompasses six contiguous olfactory receptor genes (OR51V1, OR52Z1, OR51A1P, OR52A1, OR52A5, and OR52A4) all of which are expressed in the brain. Topology analysis of the encoded proteins from these olfactory receptor genes revealed that OR52Z1, OR52A1, OR52A5, and OR52A4 are predicted to be functional receptors as they display integral characteristics of G-proteins coupled receptors. Individuals homozygous for the 118 kb β-globin deletion are afflicted with β-thalassemia due to a homozygous deletion of the β-globin gene and have no alleles for the above mentioned olfactory receptors genes. This is the first example of a homozygous deletion of olfactory receptor genes in human. Although altered olfaction remains to be ascertained in these individuals, such a study can be carried out in β-thalassemia patients from Malaysia, Indonesia and the Philippines where this mutation is common. Furthermore, OR52A1 contains a γ-globin enhancer, which was previously shown to confer continuous expression of the fetal γ-globin genes. Thus, the hypothesis that β-thalassemia individuals, who are homozygous for the 118 kb deletion, may also have an exacerbation of their anemia due to the deletion of two copies of the γ-globin enhancer element is worthy of consideration

Identification of Rice Transcription Factors Associated with Drought Tolerance Using the Ecotilling Method

The drought tolerance (DT) of plants is a complex quantitative trait. Under natural and artificial selection, drought tolerance represents the crop survival ability and production capacity under drought conditions (Luo, 2010). To understand the regulation mechanism of varied drought tolerance among rice genotypes, 95 diverse rice landraces or varieties were evaluated within a field screen facility based on the ‘line–source soil moisture gradient’, and their resistance varied from extremely resistant to sensitive. The method of Ecotype Targeting Induced Local Lesions in Genomes (Ecotilling) was used to analyze the diversity in the promoters of 24 transcription factor families. The bands separated by electrophoresis using Ecotilling were converted into molecular markers. STRUCTURE analysis revealed a value of K = 2, namely, the population with two subgroups (i.e., indica and japonica), which coincided very well with the UPGMA clusters (NTSYS-pc software) using distance-based analysis and InDel markers. Then the association analysis between the promoter diversity of these transcription factors and the DT index/level of each variety was performed. The results showed that three genes were associated with the DT index and that five genes were associated with the DT level. The sequences of these associated genes are complex and variable, especially at approximately 1000 bp upstream of the transcription initiation sites. The study illuminated that association analysis aimed at Ecotilling diversity of natural groups could facilitate the isolation of rice genes related to complex quantitative traits