High-resolution genetic map and QTL analysis of growth-related traits of Hevea brasiliensis cultivated under suboptimal temperature and humidity conditions

Rubber tree (Hevea brasiliensis) cultivation is the main source of natural rubber worldwide and has been extended to areas with suboptimal climates and lengthy drought periods; this transition affects growth and latex production. High-density genetic maps with reliable markers support precise mapping of quantitative trait loci (QTL), which can help reveal the complex genome of the species, provide tools to enhance molecular breeding, and shorten the breeding cycle. In this study, QTL mapping of the stem diameter, tree height, and number of whorls was performed for a full-sibling population derived from a GT1 and RRIM701 cross. A total of 225 simple sequence repeats (SSRs) and 186 single-nucleotide polymorphism (SNP) markers were used to construct a base map with 18 linkage groups and to anchor 671 SNPs from genotyping by sequencing (GBS) to produce a very dense linkage map with small intervals between loci. The final map was composed of 1,079 markers, spanned 3,779.7 cM with an average marker density of 3.5 cM, and showed collinearity between markers from previous studies. Significant variation in phenotypic characteristics was found over a 59-month evaluation period with a total of 38 QTLs being identified through a composite interval mapping method. Linkage group 4 showed the greatest number of QTLs (7), with phenotypic explained values varying from 7.67 to 14.07%. Additionally, we estimated segregation patterns, dominance, and additive effects for each QTL. A total of 53 significant effects for stem diameter were observed, and these effects were mostly related to additivity in the GT1 clone. Associating accurate genome assemblies and genetic maps represents a promising strategy for identifying the genetic basis of phenotypic traits in rubber trees. Then, further research can benefit from the QTLs identified herein, providing a better understanding of the key determinant genes associated with growth of Hevea brasiliensis under limiting water conditions

Linkage disequilibrium and population structure in wild and cultivated populations of rubber tree (Hevea brasiliensis).

Abstract: Among rubber tree species, which belong to the Hevea genus of the Euphorbiaceae family, Hevea brasiliensis (Willd. ex Adr.de Juss.) Muell. Arg. is the main commercial source of natural rubber production worldwide. Knowledge of the population structure and linkage disequilibrium (LD) of this species is essential for the efficient organization and exploitation of genetic resources. Here, we obtained single-nucleotide polymorphisms (SNPs) using a genotyping-by-sequencing (GBS) approach and then employed the SNPs for the following objectives: (i) to identify the positions of SNPs on a genetic map of a segregating mapping population, (ii) to evaluate the population structure of a germplasm collection, and (iii) to detect patterns of LD decay among chromosomes for future genetic association studies in rubber tree. A total of 626 genotypes, including both germplasm accessions (368) and individuals from a genetic mapping population (254), were genotyped. A total of 77,660 and 21,283 SNPs were detected by GBS in the germplasm and mapping populations, respectively. The mapping population, which was previously mapped, was constructed with 1,062 markers, among which only 576 SNPs came from GBS, reducing the average interval between two adjacent markers to 4.4 cM. SNPs from GBS genotyping were used for the analysis of genetic structure and LD estimation in the germplasm accessions. Two groups, which largely corresponded to the cultivated and wild populations, were detected using STRUCTURE and via principal coordinate analysis. LD analysis, also using the mapped SNPs, revealed that non-random associations varied along chromosomes, with regions of high LD interspersed with regions of low LD. Considering the length of the genetic map (4,693 cM) and the mean LD (0.49 for cultivated and 0.02 for wild populations), a large number of evenly spaced SNPs would be needed to perform genome-wide association studies in rubber tree, and the wilder the genotypes used, the more difficult the mapping saturation

Activation of Type 1 Cannabinoid Receptor (CB1R) promotes neurogenesis in murine subventricular zone cell cultures

The endocannabinoid system has been implicated in the modulation of adult neurogenesis. Here, we describe the effect of type 1 cannabinoid receptor (CB1R) activation on self-renewal, proliferation and neuronal differentiation in mouse neonatal subventricular zone (SVZ) stem/progenitor cell cultures. Expression of CB1R was detected in SVZ-derived immature cells (Nestin-positive), neurons and astrocytes. Stimulation of the CB1R by (R)-(+)-Methanandamide (R-m-AEA) increased self-renewal of SVZ cells, as assessed by counting the number of secondary neurospheres and the number of Sox2+/+ cell pairs, an effect blocked by Notch pathway inhibition. Moreover, R-m-AEA treatment for 48 h, increased proliferation as assessed by BrdU incorporation assay, an effect mediated by activation of MAPK-ERK and AKT pathways. Surprisingly, stimulation of CB1R by R-m-AEA also promoted neuronal differentiation (without affecting glial differentiation), at 7 days, as shown by counting the number of NeuN-positive neurons in the cultures. Moreover, by monitoring intracellular calcium concentrations ([Ca2+](i)) in single cells following KCl and histamine stimuli, a method that allows the functional evaluation of neuronal differentiation, we observed an increase in neuronal-like cells. This proneurogenic effect was blocked when SVZ cells were co-incubated with R-m-AEA and the CB1R antagonist AM 251, for 7 days, thus indicating that this effect involves CB1R activation. In accordance with an effect on neuronal differentiation and maturation, R-m-AEA also increased neurite growth, as evaluated by quantifying and measuring the number of MAP2-positive processes. Taken together, these results demonstrate that CB1R activation induces proliferation, self-renewal and neuronal differentiation from mouse neonatal SVZ cell cultures.Fundacao para a Ciencia e a Tecnologia - Portugal [POCTI/SAU-NEU/68465/2006, PTDC/SAU-NEU/104415/2008, PTDC/SAU-NEU/101783/2008, POCTI/SAU-NEU/110838/2009]; Fundacao Calouste Gulbenkian [96542]; Fundacao para a Ciencia e Tecnologiainfo:eu-repo/semantics/publishedVersio

Dentes inclusos

The aim of this work is to establish a routine for clinicai and radiographical examination of unerupted teeth in order to facilitate the diagnosis and the choice of a suitable surgical technice.O objetivo deste trabalho é estabelecer uma rotina para exame clínico e radiográfico de dentes inclusos a fim de facilitar o diagnóstico e a escolha da técnica cirúrgica indicada

The CALIFA survey across the Hubble sequence: Spatially resolved stellar population properties in galaxies

© ESO, 2015. Various different physical processes contribute to the star formation and stellar mass assembly histories of galaxies. One important approach to understanding the significance of these different processes on galaxy evolution is the study of the stellar population content of today's galaxies in a spatially resolved manner. The aim of this paper is to characterize in detail the radial structure of stellar population properties of galaxies in the nearby universe, based on a uniquely large galaxy sample, considering the quality and coverage of the data. The sample under study was drawn from the CALIFA survey and contains 300 galaxies observed with integral field spectroscopy. These cover a wide range of Hubble types, from spheroids to spiral galaxies, while stellar masses range from MBlack star ∼ 109 to 7 × 1011 M⊙. We apply the fossil record method based on spectral synthesis techniques to recover the following physical properties for each spatial resolution element in our target galaxies: the stellar mass surface density (μBlack star), stellar extinction (AV), light-weighted and mass-weighted ages ('log age'L, 'log age'M), and mass-weighted metallicity ('log ZBlack star'M). To study mean trends with overall galaxy properties, the individual radial profiles are stacked in seven bins of galaxy morphology (E, S0, Sa, Sb, Sbc, Sc, and Sd). We confirm that more massive galaxies are more compact, older, more metal rich, and less reddened by dust. Additionally, we find that these trends are preserved spatially with the radial distance to the nucleus. Deviations from these relations appear correlated with Hubble type: earlier types are more compact, older, and more metal rich for a given MBlack star, which is evidence that quenching is related to morphology, but not driven by mass. Negative gradients of 'log age'L are consistent with an inside-out growth of galaxies, with the largest 'log age'L gradients in Sb-Sbc galaxies. Further, the mean stellar ages of disks and bulges are correlated and with disks covering a wider range of ages, and late-type spirals hosting younger disks. However, age gradients are only mildly negative or flat beyond R ∼ 2 HLR (half light radius), indicating that star formation is more uniformly distributed or that stellar migration is important at these distances. The gradients in stellar mass surface density depend mostly on stellar mass, in the sense that more massive galaxies are more centrally concentrated. Whatever sets the concentration indices of galaxies obviously depends less on quenching/morphology than on the depth of the potential well. There is a secondary correlation in the sense that at the same MBlack star early-type galaxies have steeper gradients. The μBlack star gradients outside 1 HLR show no dependence on Hubble type. We find mildly negative 'log ZBlack star'M gradients, which are shallower than predicted from models of galaxy evolution in isolation. In general, metallicity gradients depend on stellar mass, and less on morphology, hinting that metallicity is affected by both - the depth of the potential well and morphology/quenching.Support from the Spanish Ministerio de Economia y Competitividad, through projects AYA2010-15081 (PI R.G.D.), and Junta de Andalucia FQ1580 (PI R.G.D.), AYA2010-22111-C03-03, and AYA2010-10904E (S.F.S.). We also thank the Viabilidad, Diseno, Acceso y Mejora funding program, ICTS-2009-10, for funding the data acquisition of this project. R.C.F. thanks the hospitality of the IAA and the support of CAPES and CNPq. R.G.D. acknowledges the support of CNPq (Brazil) through Programa Ciencia sem Fronteiras (401452/2012-3). A.G. acknowledges support from EU FP7/2007-2013 under grant agreement n.267251 (AstroFIt) and from the EU Marie Curie Integration Grant >SteMaGE> Nr. PCIG12-GA-2012-326466. C.J.W. acknowledges support through the Marie Curie Career Integration Grant 303912. E.P. acknowledges support from the Guillermo Haro program at INAOE. Support for L.G. is provided by the Ministry of Economy, Development, and Tourism's Millennium Science Initiative through grant IC120009, awarded to The Millennium Institute of Astrophysics, MAS. L.G. acknowledges support by CONICYT through FONDECYT grant 3140566. J.I.P. acknowledges financial support from the Spanish MINECO under grant AYA2010-21887-C04-01 and from Junta de Andalucia Excellence Project PEX2011-FQM7058. I.M., J.M. and A.d.O. acknowledge support from the project AYA2013-42227-P. RAM is funded by the Spanish program of International Campus of Excellence Moncloa (CEI). J.M. A. acknowledges support from the European Research Council Starting Grant (SEDmorph; P.I. V. Wild).Peer Reviewe

Protein analysis and gene expression indicate differential vulnerability of Iberian fish species under a climate change scenario

Current knowledge on the biological responses of freshwater fish under projected scenarios of climate change remains limited. Here, we examine differences in the protein configuration of two endemic Iberian freshwater fish species, Squalius carolitertii and the critically endangered S. torgalensis that inhabit in the Atlantic-type northern and in the Mediterranean-type southwestern regions, respectively. We performed protein structure modeling of fourteen genes linked to protein folding, energy metabolism, circadian rhythms and immune responses. Structural differences in proteins between the two species were found for HSC70, FKBP52, HIF1α and GPB1. For S. torgalensis, besides structural differences, we found higher thermostability for two proteins (HSP90 and GBP1), which can be advantageous in a warmer environment. Additionally, we investigated how these species might respond to projected scenarios of 3° climate change warming, acidification (ΔpH = -0.4), and their combined effects. Significant changes in gene expression were observed in response to all treatments, particularly under the combined warming and acidification. While S. carolitertii presented changes in gene expression for multiple proteins related to folding (hsp90aa1, hsc70, fkbp4 and stip1), only one such gene was altered in S. torgalensis (stip1). However, S. torgalensis showed a greater capacity for energy production under both the acidification and combined scenarios by increasing cs gene expression and maintaining ldha gene expression in muscle. Overall, these findings suggest that S. torgalensis is better prepared to cope with projected climate change. Worryingly, under the simulated scenarios, disturbances to circadian rhythm and immune system genes (cry1aa, per1a and gbp1) raise concerns for the persistence of both species, highlighting the need to consider multi-stressor effects when evaluating climate change impacts upon fish. This work also highlights that assessments of the potential of endangered freshwater species to cope with environmental change are crucial to help decision-makers adopt future conservation strategies.info:eu-repo/semantics/publishedVersio