Opposing shear senses in a subdetachment mylonite zone: Implications for core complex mechanics

[1] Global studies of metamorphic core complexes and low‐angle detachment faults have highlighted a fundamental problem: Since detachments excise crustal section, the relationship between the mylonitic rocks in their footwalls and the brittle deformation in their hanging walls is commonly unclear. Mylonites could either reflect ductile deformation related to exhumation along the detachment fault, or they could be a more general feature of the extending middle crust that has been “captured ” by the detachment. In the first case we would expect the kinematics of the mylonite zone to mirror the sense of movement on the detachment; in the second case both the direction and sense of shear in the mylonites could be different. The northern Snake Range décollement (NSRD) is a classic Basin and Range detachment fault with a well‐documented top‐east of displacement. We present structural, paleo-magnetic, geochronological, and geothermometric evidence to suggest that the mylonite zone below the NSRD locally experienced phases of both east ‐ and west‐directed shear, inconsistent with movement along a single detachment fault. We therefore propose that the footwall mylonites represent a predetachment dis-continuity in the middle crust that separated localized deformation above from distributed crustal flow below (localized‐distributed transition (LDT)). The mylonites were subsequently captured by a moderately dipping brittle detachment that soled down to the middle crust and exhumed them around a rolling hinge into a subhorizontal orientation at the surface, produc-ing the present‐day NSRD. In this interpretation the brittle hanging wall represents a series of rotated upper crustal normal faults, whereas the mylonitic footwall represents one or more exhumed middl

Fuel composition influences fire characteristics and understorey hardwoods in pine savanna

Fuels in the groundcover of frequently burned south-eastern pine savannas include shed leaves of trees. Flammable needles of longleaf pine (Pinus palustris) potentially increase maximum fire temperatures and durations of heating, negatively affecting other trees within the groundcover. Less flammable leaves that accumulate around the bases of understorey stems of hardwood trees such as mockernut hickories (Carya alba) in the fall potentially depress maximum fire temperatures and durations of heating, enhancing post-fire recovery. We experimentally manipulated amounts of pine and hickory leaves beneath understorey hickory stems in a pine savanna, measured temperatures during prescribed fires and assessed combustion of fuels and survival and regrowth of hickory stems. Pine needles increased fire temperatures and durations of heating relative to herbaceous fuels and increased combustion of hickory leaves. Hickory leaves, however, neither increased nor decreased fire characteristics relative to herbaceous fuels. All hickories survived fire by resprouting. When pine needles were absent, most hickories resprouted from buds located above-ground along the stem at heights inversely related to temperature increase. In contrast, resprouting occurred only from underground root crowns when pine needles were present. Such differences in locations of resprouts influenced sizes of stems at the end of the growing season. Synthesis. Groundcover fuels containing flammable leaves shed by pyrogenic species of savanna trees affect local fire characteristics and resprouting of non-pyrogenic understorey trees. Thus, local variation in flammable fuels produced by pyrogenic species can engineer landscape dynamics of other trees in savannas. © 2012 The Authors. Journal of Ecology © 2012 British Ecological Society

Bulk de novo mitogenome assembly from pooled total DNA elucidates the phylogeny of weevils (Coleoptera: Curculionoidea)

Complete mitochondrial genomes have been shown to be reliable markers for phylogeny reconstruction among diverse animal groups. However, the relative difficulty and high cost associated with obtaining de novo full mitogenomes have frequently led to conspicuously low taxon sampling in ensuing studies. Here, we report the successful use of an economical and accessible method for assembling complete or near-complete mitogenomes through shot-gun next-generation sequencing of a single library made from pooled total DNA extracts of numerous target species. To avoid the use of separate indexed libraries for each specimen, and an associated increase in cost, we incorporate standard polymerase chain reaction-based “bait” sequences to identify the assembled mitogenomes. The method was applied to study the higher level phylogenetic relationships in the weevils (Coleoptera: Curculionoidea), producing 92 newly assembled mitogenomes obtained in a single Illumina MiSeq run. The analysis supported a separate origin of wood-boring behavior by the subfamilies Scolytinae, Platypodinae, and Cossoninae. This finding contradicts morphological hypotheses proposing a close relationship between the first two of these but is congruent with previous molecular studies, reinforcing the utility of mitogenomes in phylogeny reconstruction. Our methodology provides a technically simple procedure for generating densely sampled trees from whole mitogenomes and is widely applicable to groups of animals for which bait sequences are the only required prior genome knowledge

Inhibition in multiclass classification

The role of inhibition is investigated in a multiclass support vector machine formalism inspired by the brain structure of insects. The so-called mushroom bodies have a set of output neurons, or classification functions, that compete with each other to encode a particular input. Strongly active output neurons depress or inhibit the remaining outputs without knowing which is correct or incorrect. Accordingly, we propose to use a classification function that embodies unselective inhibition and train it in the large margin classifier framework. Inhibition leads to more robust classifiers in the sense that they perform better on larger areas of appropriate hyperparameters when assessed with leave-one-out strategies. We also show that the classifier with inhibition is a tight bound to probabilistic exponential models and is Bayes consistent for 3-class problems. These properties make this approach useful for data sets with a limited number of labeled examples. For larger data sets, there is no significant comparative advantage to other multiclass SVM approaches

Rheological transitions in the middle crust:insights from Cordilleran metamorphic core complexes

High-strain mylonitic rocks in Cordilleran metamorphic core complexes reflect ductile deformation in the middle crust, but in many examples it is unclear how these mylonites relate to the brittle detachments that overlie them. Field observations, microstructural analyses, and thermobarometric data from the footwalls of three metamorphic core complexes in the Basin and Range Province, USA (the Whipple Mountains, California; the northern Snake Range, Nevada; and Ruby Mountains–East Humboldt Range, Nevada), suggest the presence of two distinct rheological transitions in the middle crust: (1) the brittle–ductile transition (BDT), which depends on thermal gradient and tectonic regime, and marks the switch from discrete brittle faulting and cataclasis to continuous, but still localized, ductile shear, and (2) the localized–distributed transition, or LDT, a deeper, dominantly temperature-dependent transition, which marks the switch from localized ductile shear to distributed ductile flow. In this model, brittle normal faults in the upper crust persist as ductile shear zones below the BDT in the middle crust, and sole into the subhorizontal LDT at greater depths.<br><br>In metamorphic core complexes, the presence of these two distinct rheological transitions results in the development of two zones of ductile deformation: a relatively narrow zone of high-stress mylonite that is spatially and genetically related to the brittle detachment, underlain by a broader zone of high-strain, relatively low-stress rock that formed in the middle crust below the LDT, and in some cases before the detachment was initiated. The two zones show distinct microstructural assemblages, reflecting different conditions of temperature and stress during deformation, and contain superposed sequences of microstructures reflecting progressive exhumation, cooling, and strain localization. The LDT is not always exhumed, or it may be obscured by later deformation, but in the Whipple Mountains, it can be directly observed where high-strain mylonites captured from the middle crust depart from the brittle detachment along a mylonitic front

Inhibition in multiclass classification

The role of inhibition is investigated in a multiclass support vector machine formalism inspired by the brain structure of insects. The so-called mushroom bodies have a set of output neurons, or classification functions, that compete with each other to encode a particular input. Strongly active output neurons depress or inhibit the remaining outputs without knowing which is correct or incorrect. Accordingly, we propose to use a classification function that embodies unselective inhibition and train it in the large margin classifier framework. Inhibition leads to more robust classifiers in the sense that they perform better on larger areas of appropriate hyperparameters when assessed with leave-one-out strategies. We also show that the classifier with inhibition is a tight bound to probabilistic exponential models and is Bayes consistent for 3-class problems. These properties make this approach useful for data sets with a limited number of labeled examples. For larger data sets, there is no significant comparative advantage to other multiclass SVM approaches

Comment on “Channel flow, tectonic overpressure, and exhumation of high-pressure rocks in the Greater Himalayas” by Marques et al. (2018)

The upward-tapering channel model proposed by Marques et al. (2018) for the Himalayas has a “base” that forms part of the subducting footwall and therefore does not close the channel. This configuration does not produce return flow, and no dynamic overpressure develops in the channel. The geometrical and kinematic configuration they actually use for their calculations differs from this and is both geologically and mechanically improbable. In addition, the fixed upper boundary condition in their models is mechanically unrealistic and inconsistent with geological and geophysical constraints from the Himalayan orogen. In reality, the dynamic pressures calculated from their model, which exceed lithostatic pressure by as much as 1.5&thinsp;GPa, would cause elastic flexure or permanent deformation of the upper plate. I estimate that a flexural upwarp of 50&thinsp;km of the upper plate would be required to balance forces, which would lead to geologically unrealistic topographic and gravity anomalies. The magnitude of the dynamic overpressure that could be confined is in fact limited by the shear strength of the upper plate in the Himalayas, which is likely to be &lt;&thinsp;120&thinsp;MPa.</p

Late extensional shear zones and associated recumbent folds in the Alpujarride subduction complex, Betic Cordillera, southern Spain

The existence in the Alpujarride Complex (Betic Cordillera, southern Spain) of a relatively continuous extensional event (following crustal thickening) is based on detailed structural studies and is consistent with the P-T paths and geochronological data established for the Alpujarride rocks. According to our research, the Alpujarride Complex contains two large-scale shear zones accommodating early Miocene extension. The shear zones contain km-scale recumbent folds, some with sheath fold geometry, and megaboudinage structures, and are closely associated with detachment faults.Large-scale folds and boudins cause dome-like undulations in the detachments, which are inferred to overlap in time with the deformation in the shear zones. One shear zone in the eastern part of the orogen is top-N; the other, in the western part, is top-E. The change in the shear direction may represent a temporal evolution in the direction of shear, possibly related to a change in the subduction direction in space and time