Mosaic structure in the spines of Holopneustes porossisimus

Sea urchin spines of Holopneustes porossisimus are porous singlecrystals, with the pores being filled with a material rich in carbon,silicon, fluorine and sodium. The magnesian calcite constituting thespine is highly strained. Even though the spines appear to be singlecrystalline on a macroscopic scale, the calcitic material exhibits anextended defect network. We find dislocations as well as rotational andother, not yet identified boundaries. We also observe within spinecalcite a patterned distribution of sulphur. Both distributions, that ofthe defect network and that of sulphur resemble in their pattern to eachother and have a similar mesh size of 50 nm. We conclude from theseobservations that they arise from the growth process of the spine andaccount for the mosaicity within the spine single crystals

Tunable and Switchable Coupling Between Two Superconducting Resonators

We realize a device allowing for tunable and switchable coupling between two superconducting resonators mediated by an artificial atom. For the latter, we utilize a persistent current flux qubit. We characterize the tunable and switchable coupling in frequency and time domain and find that the coupling between the relevant modes can be varied in a controlled way. Specifically, the coupling can be tuned by adjusting the flux through the qubit loop or by saturating the qubit. Our time domain measurements allow us to find parameter regimes for optimal switch performance with respect to qubit drive power and the dynamic range of the resonator input power

Biomineral electron backscatter diffraction for palaeontology

Electron backscatter diffraction (EBSD) originated in materials science and has transferred to biomineral research providing insight into fossil and modern biominerals. An electron microscopy technique, EBSD requires a fine polished sample surface where the electron beam diffracts in the first few lattice layers, identifying mineral, polymorph and crystallographic orientation. The technique is particularly well suited for the analysis of modern and fossil calcium carbonate biominerals, where it provides key insight into biological control of mineral formation such as in molluscs and brachiopods. EBSD readily identifies original and secondary mineralogy, which helps to inform our understanding of biomineral evolution such as the identification of original aragonite in Silurian trimerellid brachiopods. As a technique to identify and thus avoid the inclusion of secondary minerals in proxy organisms such as corals, EBSD can be used to ensure accuracy of palaeoproxy data. Even when fossil systems have no modern equivalents, EBSD can provide key data to determine functional mechanisms such as in the lenses of schizochroal eyes of phacopine trilobites. These few examples illustrate that EBSD is proving to be a valuable component of the palaeontology toolkit

EGFR-specific T cell frequencies correlate with EGFR expression in head and neck squamous cell carcinoma

Background\ud In head and neck squamous cell carcinoma (HNSCC), expression levels of the epidermal growth factor receptor (EGFR) correlate with poor prognosis and decreased survival rates. As the mechanisms responsible for cellular immune response to EGFR in vivo remain unclear, the frequency and function of EGFR-specific cytotoxic T cells (CTL) was determined in HNSCC patients.\ud \ud Methods\ud The frequency of CTL specific for the HLA-A2.1-restricted EGFR-derived YLN peptide (YLNTVQPTCV) and KLF peptide (KLFGTSGQKT) was determined in 16 HLA-A2.1+ HNSCC patients and 16 healthy HLA-A2.1+ individuals (NC) by multicolor flow cytometry. Patients' results were correlated to EGFR expression obtained by immunohistochemistry in corresponding tumor sections. Proliferation and anti-tumor activity of peptide-specific CTL was demonstrated by in vitro stimulation with dendritic cells pulsed with the peptides.\ud \ud Results\ud Frequency of EGFR-specific CTL correlated significantly with EGFR expression in tumor sections (p = 0.02, r2 = 0.6). Patients with elevated EGFR scores (> 7) had a significantly higher frequency of EGFR-specific CTL than NC and patients with low EGFR scores (< 7). EGFR-specific CTL from cancer patients were expanded ex vivo and produced IFN-γ upon recognition of EGFR+ target cells.\ud \ud Conclusion\ud EGFR expressed on HNSCC cells induces a specific immune response in vivo. Strategies for expansion of EGFR-specific CTL may be important for future immunotherapy of HNSCC patients

Tunable coupling of transmission-line microwave resonators mediated by an rf SQUID

10 pags., 5 figs.We realize tunable coupling between two superconducting transmission line resonators. The coupling is mediated by a non-hysteretic rf SQUID acting as a flux-tunable mutual inductance between the resonators. We present a spectroscopic characterization of the device. In particular, we observe couplings g/2π ranging between –320 MHz and 37 MHz. In the case of g 0, the microwave power cross transmission between the two resonators is reduced by almost four orders of magnitude as compared to the case where the coupling is switched on.The authors acknowledge support from the German Research Foundation through SFB 631 and FE 1564/1-1; the EU projects CCQED, PROMISCE and SCALEQIT; the doctorate program ExQM of the Elite Network of Bavaria; the Spanish MINECO projects FIS2012-33022, FIS2012-36673-C03-02, and FIS2015-69983-P; the CAM Research Network QUITEMAD+; the Basque Government IT472-10 and UPV/EHU UFI 11/55

Genetic, environmental and stochastic factors in monozygotic twin discordance with a focus on epigenetic differences

PMCID: PMC3566971This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited

Marginal Effects and Significance Testing with Heckman's Sample Selection Model: A Methodological Note

This paper illustrates two techniques for calculating the statistical significance of the marginal effects derived from Heckman?s sample selection model,an increasingly common econometric specification in political science. The discussion draws on an analysis by Sweeney (2003) of the incidence and intensity of interstate disputes. After replicating his results, the paper presents the delta method and the nonparametric bootstrap as alternative techniques for obtaining standard errors of the marginal effects, which themselves are calculated from a transformation of the model parameters.The analysis reveals two variables for which misleading inferences are drawn with respect to the precision of the estimated coefficients in the original study, suggesting that significance testing of the derived marginal effects is warranted

The effect of NGATHA altered activity on auxin signaling pathways within the Arabidopsis gynoecium

[EN] The four NGATHA genes (NGA) form a small subfamily within the large family of B3-domain transcription factors of Arabidopsis thaliana. NGA genes act redundantly to direct the development of the apical tissues of the gynoecium, the style, and the stigma. Previous studies indicate that NGA genes could exert this function at least partially by directing the synthesis of auxin at the distal end of the developing gynoecium through the upregulation of two different YUCCA genes, which encode flavin monooxygenases involved in auxin biosynthesis. We have compared three developing pistil transcriptome data sets from wildtype, nga quadruple mutants, and a 35S::NGA3 line. The differentially expressed genes showed a significant enrichment for auxin-related genes, supporting the idea of NGA genes as major regulators of auxin accumulation and distribution within the developing gynoecium. We have introduced reporter lines for several of these differentially expressed genes involved in synthesis, transport and response to auxin in NGA gain- and loss-of-function backgrounds. We present here a detailed map of the response of these reporters to NGA misregulation that could help to clarify the role of NGA in auxin-mediated gynoecium morphogenesis. Our data point to a very reduced auxin synthesis in the developing apical gynoecium of nga mutants, likely responsible for the lack of DR5rev::GFP reporter activity observed in these mutants. In addition, NGA altered activity affects the expression of protein kinases that regulate the cellular localization of auxin efflux regulators, and thus likely impact auxin transport. Finally, protein accumulation in pistils of several ARFs was differentially affected by nga mutations or NGA overexpression, suggesting that these accumulation patterns depend not only on auxin distribution but could be also regulated by transcriptional networks involving NGA factors.This work was supported by the Spanish Ministerio de Ciencia e Innovacion (grant no. BIO2009–09920 to Cristina Ferrándiz), the Fondazione Cariplo (grant “Fruitalia” to Lucia Colombo and Cristina Ferrándiz), and the European Union (grant no. FP7–PEOPLE–PIRSES–2009–247589 to Lucia Colombo, Cristina Ferrándiz, Antonio C. Oliveira).Martínez Fernández, I.; Sanchis, S.; Marini, N.; Balanzá Pérez, V.; Ballester Fuentes, P.; Navarrete Gomez, ML.; Oliveira, AC.... (2014). The effect of NGATHA altered activity on auxin signaling pathways within the Arabidopsis gynoecium. Frontiers in Plant Science. 5:210-1-210-11. https://doi.org/10.3389/fpls.2014.00210S210-1210-11