Shape Optimization by means of Proper Orthogonal Decomposition and Dynamic Mode Decomposition

Shape optimization is a challenging task in many engineering fields, since the numerical solutions of parametric system may be computationally expensive. This work presents a novel optimization procedure based on reduced order modeling, applied to a naval hull design problem. The advantage introduced by this method is that the solution for a specific parameter can be expressed as the combination of few numerical solutions computed at properly chosen parametric points. The reduced model is built using the proper orthogonal decomposition with interpolation (PODI) method. We use the free form deformation (FFD) for an automated perturbation of the shape, and the finite volume method to simulate the multiphase incompressible flow around the deformed hulls. Further computational reduction is done by the dynamic mode decomposition (DMD) technique: from few high dimensional snapshots, the system evolution is reconstructed and the final state of the simulation is faithfully approximated. Finally the global optimization algorithm iterates over the reduced space: the approximated drag and lift coefficients are projected to the hull surface, hence the resistance is evaluated for the new hulls until the convergence to the optimal shape is achieved. We will present the results obtained applying the described procedure to a typical Fincantieri cruise shi

Multi-species habitat models highlight the key importance of flooded reedbeds for inland wetland birds: implications for management and conservation

Abstract Background Inland wetlands are crucial for biodiversity conservation, especially in highly-urbanized landscapes. In the European Union, many wetlands are included in the EU 'Natura 2000' network, the main tool for biodiversity conservation over the continent, which requires the development of site-specific management plans. Clear and feasible recommendations are necessary to provide site managers with effective tools for the maintenance of biodiversity in these unstable environments. Birds are excellent umbrella species, therefore a management targeted at increasing habitat suitability for focal bird species would likely benefit broader wetland biological communities. Methods During spring–summer 2017, we collected presence/absence data for 10 bird species of conservation interest at a site scale for 21 Natura 2000 sites. We also carried out a point count survey to detect presence/absence of four reedbed-dwelling species at 75 points. At the site level, we estimated landscape characteristics from regional GIS-layers, whereas fine-scaled habitat composition was recorded on the field within a 100 m-buffer around the 75 points. We analysed the effect of the extent of different habitats on species' occurrence probability by means of multi-species binomial multivariate adaptive regression splines (MARS) at both scales. We also run species-specific MARS models to compare their performance with those of multi-species models. Results At the site scale, the extent of the reedbeds/mires was positively associated with the occurrence of all species of conservation concern. At the point-count scale, reedbed extent positively predicted species' occurrence, but only in presence of patches of clear shallow water. Species-specific MARS models showed qualitatively similar results for some species, but generally were outperformed by multi-species ones. Conclusions Multi-species MARS models confirmed to be an efficient tool in disclosing species-habitat relationships even for set of species including scarce taxa and when only short-term monitoring data are available. In terms of conservation measures, our findings stress the importance of Phragmites australis reedbed as a key habitat for avian biodiversity, but only when it is flooded and interspersed with scattered patches of open water. The preservation of wide (> 100/150 ha) and flooded reedbeds structured in spots of no less than 2 ha emerges as the main conservation measure for the long-term conservation of the threatened avifauna of inland pre-Alpine wetlands

Nocturnal flights lead to collision risk with power lines and wind farms in Lesser Kestrels: a preliminary assessment through GPS tracking

We present here the first report about Lesser Kestrels' flight height behaviour and potential collision risk with wind farms and power lines in two colonies (Gravina in Puglia and Altamura; Apulia, Italy) that present the highest density of Lesser Kestrels worldwide in urban areas. Using accurate GPS data-loggers on nine Lesser Kestrels, we collected data on flight activities during the nestling period. The tracked Lesser Kestrels spent 50% of the monitoring time at heights above ground level (AGL) lower than 41 m, and 75% of time below 98 m AGL. Flight heights resulted not significantly different between the two colonies. Instead, at night Lesser Kestrels resulted to fly at significantly lower altitudes than in the daytime. Our findings, although preliminary, underline the potential collision risk with power lines and wind farms at night in the Lesser Kestrels' colony of Gravina in Puglia. Instead, collision risk resulted negligible during the daytime for both colonies. We conclude that the disappearing of pseudo-steppes in the study area is forcing Lesser Kestrels to flight also at night for foraging purposes during the breading season, which in turn leads to an increased risk of collision with power lines and wind farms

From START to FINISH : the influence of osmotic stress on the cell cycle

Peer reviewedPublisher PD

A chemical survey of exoplanets with ARIEL

Thousands of exoplanets have now been discovered with a huge range of masses, sizes and orbits: from rocky Earth-like planets to large gas giants grazing the surface of their host star. However, the essential nature of these exoplanets remains largely mysterious: there is no known, discernible pattern linking the presence, size, or orbital parameters of a planet to the nature of its parent star. We have little idea whether the chemistry of a planet is linked to its formation environment, or whether the type of host star drives the physics and chemistry of the planet’s birth, and evolution. ARIEL was conceived to observe a large number (~1000) of transiting planets for statistical understanding, including gas giants, Neptunes, super-Earths and Earth-size planets around a range of host star types using transit spectroscopy in the 1.25–7.8 μm spectral range and multiple narrow-band photometry in the optical. ARIEL will focus on warm and hot planets to take advantage of their well-mixed atmospheres which should show minimal condensation and sequestration of high-Z materials compared to their colder Solar System siblings. Said warm and hot atmospheres are expected to be more representative of the planetary bulk composition. Observations of these warm/hot exoplanets, and in particular of their elemental composition (especially C, O, N, S, Si), will allow the understanding of the early stages of planetary and atmospheric formation during the nebular phase and the following few million years. ARIEL will thus provide a representative picture of the chemical nature of the exoplanets and relate this directly to the type and chemical environment of the host star. ARIEL is designed as a dedicated survey mission for combined-light spectroscopy, capable of observing a large and well-defined planet sample within its 4-year mission lifetime. Transit, eclipse and phase-curve spectroscopy methods, whereby the signal from the star and planet are differentiated using knowledge of the planetary ephemerides, allow us to measure atmospheric signals from the planet at levels of 10–100 part per million (ppm) relative to the star and, given the bright nature of targets, also allows more sophisticated techniques, such as eclipse mapping, to give a deeper insight into the nature of the atmosphere. These types of observations require a stable payload and satellite platform with broad, instantaneous wavelength coverage to detect many molecular species, probe the thermal structure, identify clouds and monitor the stellar activity. The wavelength range proposed covers all the expected major atmospheric gases from e.g. H2O, CO2, CH4 NH3, HCN, H2S through to the more exotic metallic compounds, such as TiO, VO, and condensed species. Simulations of ARIEL performance in conducting exoplanet surveys have been performed – using conservative estimates of mission performance and a full model of all significant noise sources in the measurement – using a list of potential ARIEL targets that incorporates the latest available exoplanet statistics. The conclusion at the end of the Phase A study, is that ARIEL – in line with the stated mission objectives – will be able to observe about 1000 exoplanets depending on the details of the adopted survey strategy, thus confirming the feasibility of the main science objectives.Peer reviewedFinal Published versio

Ecological barriers mediate spatiotemporal shifts of bird communities at a continental scale

This study was supported by the Swiss National Science Foundation (grant P2BEP3_195232) and by the Academy of Finland (project 323527 and project 329251).Species' range shifts and local extinctions caused by climate change lead to community composition changes. At large spatial scales, ecological barriers, such as biome boundaries, coastlines, and elevation, can influence a community's ability to shift in response to climate change. Yet, ecological barriers are rarely considered in climate change studies, potentially hindering predictions of biodiversity shifts. We used data from two consecutive European breeding bird atlases to calculate the geographic distance and direction between communities in the 1980s and their compositional best match in the 2010s and modeled their response to barriers. The ecological barriers affected both the distance and direction of bird community composition shifts, with coastlines and elevation having the strongest influence. Our results underscore the relevance of combining ecological barriers and community shift projections for identifying the forces hindering community adjustments under global change. Notably, due to (macro)ecological barriers, communities are not able to track their climatic niches, which may lead to drastic changes, and potential losses, in community compositions in the future.Publisher PDFPeer reviewe

Thermosensitivity of the Saccharomyces cerevisiae gpp1gpp2 double deletion strain can be reduced by overexpression of genes involved in cell wall maintenance

A Saccharomyces cerevisiae strain in which the GPP1 and GPP2 genes, both encoding glycerol-3-phosphate phosphatase isoforms, are deleted, displays both osmo- and thermosensitive (ts) phenotypes. We isolated genes involved in cell wall maintenance as multicopy suppressors of the gpp1gpp2 ts phenotype. We found that the gpp1gpp2 strain is hypersensitive to cell wall stress such as treatment with β-1,3-glucanase containing cocktail Zymolyase and chitin-binding dye Calcofluor-white (CFW). Sensitivity to Zymolyase was rescued by overexpression of SSD1, while CFW sensitivity was rescued by SSD1, FLO8 and WSC3-genes isolated as multicopy suppressors of the gpp1gpp2 ts phenotype. Some of the isolated suppressor genes (SSD1, FLO8) also rescued the lytic phenotype of slt2 deletion strain. Additionally, the sensitivity to CFW was reduced when the cells were supplied with glycerol. Both growth on glycerol-based medium and overexpression of SSD1, FLO8 or WSC3 had additive suppressing effect on CFW sensitivity of the gpp1gpp2 mutant strain. We also confirmed that the internal glycerol level changed in cells exposed to cell wall perturbation. © 2007 Springer-Verlag

Anti-Malarial Drug Artesunate Attenuates Experimental Allergic Asthma via Inhibition of the Phosphoinositide 3-Kinase/Akt Pathway

, and has been shown to inhibit PI3K/Akt activity. We hypothesized that artesunate may attenuate allergic asthma via inhibition of the PI3K/Akt signaling pathway.Female BALB/c mice sensitized and challenged with ovalbumin (OVA) developed airway inflammation. Bronchoalveolar lavage fluid was assessed for total and differential cell counts, and cytokine and chemokine levels. Lung tissues were examined for cell infiltration and mucus hypersecretion, and the expression of inflammatory biomarkers. Airway hyperresponsiveness was monitored by direct airway resistance analysis. Artesunate dose-dependently inhibited OVA-induced increases in total and eosinophil counts, IL-4, IL-5, IL-13 and eotaxin levels in bronchoalveolar lavage fluid. It attenuated OVA-induced lung tissue eosinophilia and airway mucus production, mRNA expression of E-selectin, IL-17, IL-33 and Muc5ac in lung tissues, and airway hyperresponsiveness to methacholine. In normal human bronchial epithelial cells, artesunate blocked epidermal growth factor-induced phosphorylation of Akt and its downstream substrates tuberin, p70S6 kinase and 4E-binding protein 1, and transactivation of NF-κB. Similarly, artesunate blocked the phosphorylation of Akt and its downstream substrates in lung tissues from OVA-challenged mice. Anti-inflammatory effect of artesunate was further confirmed in a house dust mite mouse asthma model.Artesunate ameliorates experimental allergic airway inflammation probably via negative regulation of PI3K/Akt pathway and the downstream NF-κB activity. These findings provide a novel therapeutic value for artesunate in the treatment of allergic asthma

A Deviation from the Bipolar-Tetrapolar Mating Paradigm in an Early Diverged Basidiomycete

In fungi, sexual identity is determined by specialized genomic regions called MAT loci which are the equivalent to sex chromosomes in some animals and plants. Usually, only two sexes or mating types exist, which are determined by two alternate sets of genes (or alleles) at the MAT locus (bipolar system). However, in the phylum Basidiomycota, a unique tetrapolar system emerged in which four different mating types are generated per meiosis. This occurs because two functionally distinct molecular recognition systems, each encoded by one MAT region, constrain the selection of sexual partners. Heterozygosity at both MAT regions is a pre-requisite for mating in both bipolar and tetrapolar basidiomycetes. Tetrapolar mating behaviour results from the absence of genetic linkage between the two regions bringing forth up to thousands of mating types. The subphylum Pucciniomycotina, an early diverged lineage of basidiomycetes encompassing important plant pathogens such as the rusts and saprobes like Rhodosporidium and Sporidiobolus, has been so far poorly explored concerning the content and organization of MAT loci. Here we show that the red yeast Sporidiobolus salmonicolor has a mating system unlike any previously described because occasional disruptions of the genetic cohesion of the bipolar MAT locus originate new mating types. We confirmed that mating is normally bipolar and that heterozygosity at both MAT regions is required for mating. However, a laboratory cross showed that meiotic recombination may occur within the bipolar MAT locus, explaining tetrapolar features like increased allele number and evolution rates of some MAT genes. This pseudo-bipolar system deviates from the classical bipolar–tetrapolar paradigm and, to our knowledge, has never been observed before. We propose a model for MAT evolution in the Basidiomycota in which the pseudo-bipolar system may represent a hitherto unforeseen gradual form of transition from an ancestral tetrapolar system to bipolarity