Multi-Omics Analyses Detail Metabolic Reprogramming in Lipids, Carnitines, and Use of Glycolytic Intermediates between Prostate Small Cell Neuroendocrine Carcinoma and Prostate Adenocarcinoma.

As the most common cancer in men, prostate cancer is molecularly heterogeneous. Contributing to this heterogeneity are the poorly understood metabolic adaptations of the two main types of prostate cancer, i.e., adenocarcinoma and small cell neuroendocrine carcinoma (SCNC), the latter being more aggressive and lethal. Using transcriptomics, untargeted metabolomics and lipidomics profiling on LASCPC-01 (prostate SCNC) and LNCAP (prostate adenocarcinoma) cell lines, we found significant differences in the cellular phenotypes of the two cell lines. Gene set enrichment analysis on the transcriptomics data showed 62 gene sets were upregulated in LASCPC-01, while 112 gene sets were upregulated in LNCAP. ChemRICH analysis on metabolomics and lipidomics data revealed a total of 25 metabolite clusters were significantly different. LASCPC-01 exhibited a higher glycolytic activity and lower levels of triglycerides, while the LNCAP cell line showed increases in one-carbon metabolism as an exit route of glycolytic intermediates and a decrease in carnitine, a mitochondrial lipid transporter. Our findings pinpoint differences in prostate neuroendocrine carcinoma versus prostate adenocarcinoma that could lead to new therapeutic targets in each type

Erosion, Geological History, and Indigenous Agriculture: A Tale of Two Valleys

Irrigated pondfields and rainfed field systems represented alternative pathways of agricultural intensification that were unevenly distributed across the Hawaiian Archipelago prior to European contact, with pondfields on wetter soils and older islands and rainfed systems on fertile, moderate-rainfall upland sites on younger islands. The spatial separation of these systems is thought to have contributed to the dynamics of social and political organization in pre-contact Hawai’i. However, deep stream valleys on older Hawaiian Islands often retain the remains of rainfed dryland agriculture on their lower slopes. We evaluated why rainfed agriculture developed on valley slopes on older but not younger islands by comparing soils of Pololū Valley on the young island of Hawai’i with those of Hālawa Valley on the older island of Moloka’i. Alluvial valley-bottom and colluvial slope soils of both valleys are enriched 4–5-fold in base saturation and in P that can be weathered, and greater than 10-fold in resin-extractable P and weatherable Ca, compared to soils of their surrounding uplands. However, due to an interaction of volcanically driven subsidence of the young island of Hawai’i with post-glacial sea level rise, the side walls of Pololū Valley plunge directly into a flat valley floor, whereas the alluvial floor of Hālawa Valley is surrounded by a band of fertile colluvial soils where rainfed agricultural features were concentrated. Only 5% of Pololū Valley supports colluvial soils with slopes between 5° and 12° (suitable for rainfed agriculture), whereas 16% of Hālawa Valley does so. The potential for integrated pondfield/rainfed valley systems of the older Hawaiian Islands increased their advantage in productivity and sustainability over the predominantly rainfed systems of the younger islands

Rare, Imperiled, and Recently Extinct or Extirpated Mollusks of Utah: A Literature Review

About 139 species of mollusks are known to occur, or within historical times to have occurred, in Utah. The number of known Utah mollusks is not fixed and can be expected to continue to change, increasing as new molluscan discoveries are made in Utah and possibly decreasing as taxonomic revisions change our concept of how many valid mollusk species exist. This report represents one of the end products of a review of literature—published journal articles and books as well as unpublished agency reports—dealing with mollusks in Utah. The goals of this review were to determine (1) which species have been documented from the state, (2) extent of knowledge of the status—abundance, distribution, conservational needs, and so forth—of each of the species in Utah, and, thus, (3) which species are of conservational concern in the state. This report summarizes the assembled information pertaining to the last goal, the 79 molluscan species that are of conservational priority—or of conservational interest in the cases of those believed to be extirpated or extinct; it is intended to help guide current management of the molluscan resources of the state as well as to identify gaps in existing knowledge that will need to be filled in order to manage these resources more effectively in the future. Some of the understanding that is important for truly effective management of Utah\u27s mollusks is lacking, especially with regard to our knowledge of threats to and population trends in these species. Threats to various species discussed in this report should be understood, in most cases, as potential threats, often based on educated guesses. Similarly, information pertaining to population trends of mollusks in Utah is largely unavailable from the existing literature. Despite the incompleteness of reported information concerning Utah mollusks, much is known, and this information obtained from the literature provides an valuable base from which to plan future work. Mollusks, as a group, are thought to be among the most endangered of animal groups that occur in North America, but this is a new awareness, and conservational management attention has only recently begun to be directed toward this group. The Utah Division of Wildlife Resources now has management authority for all mollusks in the state and is establishing mechanisms and procedures for the management and protection of the state\u27s molluscan resources

Ahrensite, γ-Fe_2SiO_4, a new shock-metamorphic mineral from the Tissint meteorite: Implications for the Tissint shock event on Mars

Ahrensite (IMA 2013-028), γ-Fe_2SiO_4, is the natural Fe-analog of the silicate-spinel ringwoodite (γ-Mg_2SiO_4). It occurs in the Tissint Martian meteorite, where it forms through the transformation of the fayalite-rich rims of olivine megacrysts or Fe-rich microphenocrysts in contact with shock melt pockets. The typical sequence of phase assemblages traversing across a Tissint melt pocket into olivine is: quenched melt or fayalite-pigeonite intergrowth ⇒ bridgmanite + wüstite ⇒ ahrensite and/or ringwoodite ⇒ highly-deformed olivine + nanocrystalline ringwoodite ⇒ deformed olivine. We report the first comprehensive set of crystallographic, spectroscopic, and quantitative chemical analysis of type ahrensite, and show that concentrations of ferric iron and inversion in the type material of this newly approved mineral are negligible. We also report the occurrence of nanocrystalline ringwoodite in strained olivine and establish correlations between grain size and distance from melt pockets. The ahrensite and ringwoodite crystals show no preferred orientation, consistent with random nucleation and incoherent growth within a highly strained matrix of olivine. Grain sizes of ahrensite immediately adjacent to melt pockets are consistent with growth during a shock of moderate duration (1–10 ms)

COL4A3 expression in asthmatic epithelium depends on intronic methylation and ZNF263 binding.

Background Reduction of COL4A3, one of the six isoforms of collagen 4, in asthmatic airways results in increased inflammation and angiogenesis, implicating it as a central part of asthma pathogenesis. However, to date, the path underlying these diminished COL4A3 levels has been elusive. This study investigated a possible mechanism underlying the reduction of COL4A3 expression. Methods Bronchial biopsies of 76 patients with asthma and 83 controls were subjected to RNA-sequencing and DNA methylation bead arrays to identify expression and methylation changes. The binding of ZNF263 was analysed by chromatin-immunoprecipitation sequencing coupled with quantitative (q)PCR. Effects of ZNF263 silencing, using small interfering RNA, on the COL4A3 expression were studied using qPCR. Results COL4A3 expression was significantly reduced in bronchial biopsies compared to healthy controls, whereas DNA methylation levels at cg11797365 were increased. COL4A3 expression levels were significantly low in asthmatics without inhaled corticosteroid (ICS) use, whereas the expression was not statistically different between asthmatics using ICS and controls. Methylation levels at cg11797365 in vitro were increased upon consecutive rhinovirus infections. Conclusion Our data indicate an epigenetic modification as a contributing factor for the loss of COL4A3 expression in asthmatic airway epithelium

Asymmetric function theory

The classical theory of symmetric functions has a central position in algebraic combinatorics, bridging aspects of representation theory, combinatorics, and enumerative geometry. More recently, this theory has been fruitfully extended to the larger ring of quasisymmetric functions, with corresponding applications. Here, we survey recent work extending this theory further to general asymmetric polynomials.Comment: 36 pages, 8 figures, 1 table. Written for the proceedings of the Schubert calculus conference in Guangzhou, Nov. 201

Ampullary cancers harbor ELF3 tumor suppressor gene mutations and exhibit frequent WNT dysregulation

The ampulla of Vater is a complex cellular environment from which adenocarcinomas arise to form a group of histopathologically heterogenous tumors. To evaluate the molecular features of these tumors, 98 ampullary adenocarcinomas were evaluated and compared to 44 distal bile duct and 18 duodenal adenocarcinomas. Genomic analyses revealed mutations in the WNT signaling pathway among half of the patients and in all three adenocarcinomas irrespective of their origin and histological morphology. These tumors were characterized by a high frequency of inactivating mutations of ELF3, a high rate of microsatellite instability, and common focal deletions and amplifications, suggesting common attributes in the molecular pathogenesis are at play in these tumors. The high frequency of WNT pathway activating mutation, coupled with small-molecule inhibitors of β-catenin in clinical trials, suggests future treatment decisions for these patients may be guided by genomic analysis

Satellite content and quenching of star formation in galaxy groups at z ~ 1.8

We study the properties of satellites in the environment of massive star-forming galaxies at z ~ 1.8 in the COSMOS field, using a sample of 215 galaxies on the main sequence of star formation with an average mass of ~1011M⊙. At z> 1.5, these galaxies typically trace halos of mass ≳1013M⊙. We use optical-near-infrared photometry to estimate stellar masses and star formation rates (SFR) of centrals and satellites down to ~ 6 × 109M⊙. We stack data around 215 central galaxies to statistically detect their satellite halos, finding an average of ~3 galaxies in excess of the background density. We fit the radial profiles of satellites with simple β-models, and compare their integrated properties to model predictions. We find that the total stellar mass of satellites amounts to ~68% of the central galaxy, while spectral energy distribution modeling and far-infrared photometry consistently show their total SFR to be 25-35% of the central's rate. We also see significant variation in the specific SFR of satellites within the halo with, in particular, a sharp decrease at <100 kpc. After considering different potential explanations, we conclude that this is likely an environmental signature of the hot inner halo. This effect can be explained in the first order by a simple free-fall scenario, suggesting that these low-mass environments can shut down star formation in satellites on relatively short timescales of ~0.3 Gyr