Glacial Discharge and its Impact on Phytoplankton Taxonomic Composition in an Antarctic Fjord

The influence of glacial discharge on phytoplankton community composition remains an open question. The Antarctic Peninsula fjords offer an ideal system to understand the effect of ice-ocean forcing on phytoplankton community, providing an extreme in the spatial gradient from the glacio-marine boundary to the Western Antarctic Peninsula (WAP) continental shelf. In Andvord Bay, we found that glacial meltwater input altered surface salinity and was enriched in dissolved iron and nitrate, supporting phytoplankton biomass. The three major groups of phytoplankton fueled by glacial input were: cryptophytes, diatoms, and a group of unidentified small flagellates. In December, cryptophytes dominated the phytoplankton community and were correlated with relatively warmer temperatures in the surface layer; in addition, contrary to our hypothesis, no diatom bloom was observed in the fjord in spite of dissolved iron concentration >1 nM. By April, after the growth season, the overall phytoplankton abundance had decreased by an order of magnitude. Phytoplankton, in particular diatoms, were then limited by daytime length despite abundant macro-nutrient and iron concentrations. Mixed flagellates emerged as the dominant group during April due to the decline of other major taxa. Deep-learning algorithms for predicting the abundance of each major phytoplankton group captured the effects of these environmental factors on the phytoplankton community. Our results show that the fjord, under the influence of glacial meltwater, has relatively high phytoplankton biomass combined with high macro- and trace nutrient concentrations when compared to other WAP regions influenced by sea ice melting. Based on this study, we confirm that flagellates can be the dominant taxon in Antarctic fjords and we propose that iron concentration alone is insufficient to predict diatom growth. Furthermore, buoyant meltwater plumes can enrich the fjord with nitrate even if the main circulation is not driven by glacier meltwater discharge. As glacial meltwater continues to alter the phytoplankton taxonomic composition, it will have an important implication for higher trophic levels and add significant uncertainties to the prediction of regional ecosystem dynamics and biogeochemistry.Fil: Jack Pan, B.. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Vernet, Maria. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Manck, Lauren. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Forsch, Kiefer. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Ekern, Lindsey. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Mascioni, Martina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: Barbeau, Katherine. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Almandoz, Gaston Osvaldo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; ArgentinaFil: Orona, Alexander James. Ocean Motion Technologies; Estados UnidosOcean Sciences Meeting 2020Estados UnidosOcean Sciences Meetin

The fables of pity: Rousseau, Mandeville and the animal-fable

Copyright @ 2012 Edinburgh University PressPrompted by Derrida’s work on the animal-fable in eighteenth-century debates about political power, this article examines the role played by the fiction of the animal in thinking of pity as either a natural virtue (in Rousseau’s Second Discourse) or as a natural passion (in Mandeville’s The Fable of the Bees). The war of fables between Rousseau and Mandeville – and their hostile reception by Samuel Johnson and Adam Smith – reinforce that the animal-fable illustrates not so much the proper of man as the possibilities and limitations of a moral philosophy that is unable to address the political realities of the state

TEF, Vol. 4 No. 1

This is the fourth issue of the annually published literary magazine TEF.https://scholarworks.sfasu.edu/tef/1003/thumbnail.jp

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium inaugural meeting report

The Metagenomics and Metadesign of the Subways and Urban Biomes (MetaSUB) International Consortium is a novel, interdisciplinary initiative comprised of experts across many fields, including genomics, data analysis, engineering, public health, and architecture. The ultimate goal of the MetaSUB Consortium is to improve city utilization and planning through the detection, measurement, and design of metagenomics within urban environments. Although continual measures occur for temperature, air pressure, weather, and human activity, including longitudinal, cross-kingdom ecosystem dynamics can alter and improve the design of cities. The MetaSUB Consortium is aiding these efforts by developing and testing metagenomic methods and standards, including optimized methods for sample collection, DNA/RNA isolation, taxa characterization, and data visualization. The data produced by the consortium can aid city planners, public health officials, and architectural designers. In addition, the study will continue to lead to the discovery of new species, global maps of antimicrobial resistance (AMR) markers, and novel biosynthetic gene clusters (BGCs). Finally, we note that engineered metagenomic ecosystems can help enable more responsive, safer, and quantified cities

The V471A polymorphism in autophagy-related gene ATG7 modifies age at onset specifically in Italian Huntington disease patients

The cause of Huntington disease (HD) is a polyglutamine repeat expansion of more than 36 units in the huntingtin protein, which is inversely correlated with the age at onset of the disease. However, additional genetic factors are believed to modify the course and the age at onset of HD. Recently, we identified the V471A polymorphism in the autophagy-related gene ATG7, a key component of the autophagy pathway that plays an important role in HD pathogenesis, to be associated with the age at onset in a large group of European Huntington disease patients. To confirm this association in a second independent patient cohort, we analysed the ATG7 V471A polymorphism in additional 1,464 European HD patients of the “REGISTRY” cohort from the European Huntington Disease Network (EHDN). In the entire REGISTRY cohort we could not confirm a modifying effect of the ATG7 V471A polymorphism. However, analysing a modifying effect of ATG7 in these REGISTRY patients and in patients of our previous HD cohort according to their ethnic origin, we identified a significant effect of the ATG7 V471A polymorphism on the HD age at onset only in the Italian population (327 patients). In these Italian patients, the polymorphism is associated with a 6-years earlier disease onset and thus seems to have an aggravating effect. We could specify the role of ATG7 as a genetic modifier for HD particularly in the Italian population. This result affirms the modifying influence of the autophagic pathway on the course of HD, but also suggests population-specific modifying mechanisms in HD pathogenesis

Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study

Background Huntington's disease is caused by a CAG repeat expansion in the huntingtin gene, HTT. Age at onset has been used as a quantitative phenotype in genetic analysis looking for Huntington's disease modifiers, but is hard to define and not always available. Therefore, we aimed to generate a novel measure of disease progression and to identify genetic markers associated with this progression measure. Methods We generated a progression score on the basis of principal component analysis of prospectively acquired longitudinal changes in motor, cognitive, and imaging measures in the 218 indivduals in the TRACK-HD cohort of Huntington's disease gene mutation carriers (data collected 2008–11). We generated a parallel progression score using data from 1773 previously genotyped participants from the European Huntington's Disease Network REGISTRY study of Huntington's disease mutation carriers (data collected 2003–13). We did a genome-wide association analyses in terms of progression for 216 TRACK-HD participants and 1773 REGISTRY participants, then a meta-analysis of these results was undertaken. Findings Longitudinal motor, cognitive, and imaging scores were correlated with each other in TRACK-HD participants, justifying use of a single, cross-domain measure of disease progression in both studies. The TRACK-HD and REGISTRY progression measures were correlated with each other (r=0·674), and with age at onset (TRACK-HD, r=0·315; REGISTRY, r=0·234). The meta-analysis of progression in TRACK-HD and REGISTRY gave a genome-wide significant signal (p=1·12 × 10−10) on chromosome 5 spanning three genes: MSH3, DHFR, and MTRNR2L2. The genes in this locus were associated with progression in TRACK-HD (MSH3 p=2·94 × 10−8 DHFR p=8·37 × 10−7 MTRNR2L2 p=2·15 × 10−9) and to a lesser extent in REGISTRY (MSH3 p=9·36 × 10−4 DHFR p=8·45 × 10−4 MTRNR2L2 p=1·20 × 10−3). The lead single nucleotide polymorphism (SNP) in TRACK-HD (rs557874766) was genome-wide significant in the meta-analysis (p=1·58 × 10−8), and encodes an aminoacid change (Pro67Ala) in MSH3. In TRACK-HD, each copy of the minor allele at this SNP was associated with a 0·4 units per year (95% CI 0·16–0·66) reduction in the rate of change of the Unified Huntington's Disease Rating Scale (UHDRS) Total Motor Score, and a reduction of 0·12 units per year (95% CI 0·06–0·18) in the rate of change of UHDRS Total Functional Capacity score. These associations remained significant after adjusting for age of onset. Interpretation The multidomain progression measure in TRACK-HD was associated with a functional variant that was genome-wide significant in our meta-analysis. The association in only 216 participants implies that the progression measure is a sensitive reflection of disease burden, that the effect size at this locus is large, or both. Knockout of Msh3 reduces somatic expansion in Huntington's disease mouse models, suggesting this mechanism as an area for future therapeutic investigation

Mortality from gastrointestinal congenital anomalies at 264 hospitals in 74 low-income, middle-income, and high-income countries: a multicentre, international, prospective cohort study

Summary Background Congenital anomalies are the fifth leading cause of mortality in children younger than 5 years globally. Many gastrointestinal congenital anomalies are fatal without timely access to neonatal surgical care, but few studies have been done on these conditions in low-income and middle-income countries (LMICs). We compared outcomes of the seven most common gastrointestinal congenital anomalies in low-income, middle-income, and high-income countries globally, and identified factors associated with mortality. Methods We did a multicentre, international prospective cohort study of patients younger than 16 years, presenting to hospital for the first time with oesophageal atresia, congenital diaphragmatic hernia, intestinal atresia, gastroschisis, exomphalos, anorectal malformation, and Hirschsprung’s disease. Recruitment was of consecutive patients for a minimum of 1 month between October, 2018, and April, 2019. We collected data on patient demographics, clinical status, interventions, and outcomes using the REDCap platform. Patients were followed up for 30 days after primary intervention, or 30 days after admission if they did not receive an intervention. The primary outcome was all-cause, in-hospital mortality for all conditions combined and each condition individually, stratified by country income status. We did a complete case analysis. Findings We included 3849 patients with 3975 study conditions (560 with oesophageal atresia, 448 with congenital diaphragmatic hernia, 681 with intestinal atresia, 453 with gastroschisis, 325 with exomphalos, 991 with anorectal malformation, and 517 with Hirschsprung’s disease) from 264 hospitals (89 in high-income countries, 166 in middleincome countries, and nine in low-income countries) in 74 countries. Of the 3849 patients, 2231 (58·0%) were male. Median gestational age at birth was 38 weeks (IQR 36–39) and median bodyweight at presentation was 2·8 kg (2·3–3·3). Mortality among all patients was 37 (39·8%) of 93 in low-income countries, 583 (20·4%) of 2860 in middle-income countries, and 50 (5·6%) of 896 in high-income countries (p<0·0001 between all country income groups). Gastroschisis had the greatest difference in mortality between country income strata (nine [90·0%] of ten in lowincome countries, 97 [31·9%] of 304 in middle-income countries, and two [1·4%] of 139 in high-income countries; p≤0·0001 between all country income groups). Factors significantly associated with higher mortality for all patients combined included country income status (low-income vs high-income countries, risk ratio 2·78 [95% CI 1·88–4·11], p<0·0001; middle-income vs high-income countries, 2·11 [1·59–2·79], p<0·0001), sepsis at presentation (1·20 [1·04–1·40], p=0·016), higher American Society of Anesthesiologists (ASA) score at primary intervention (ASA 4–5 vs ASA 1–2, 1·82 [1·40–2·35], p<0·0001; ASA 3 vs ASA 1–2, 1·58, [1·30–1·92], p<0·0001]), surgical safety checklist not used (1·39 [1·02–1·90], p=0·035), and ventilation or parenteral nutrition unavailable when needed (ventilation 1·96, [1·41–2·71], p=0·0001; parenteral nutrition 1·35, [1·05–1·74], p=0·018). Administration of parenteral nutrition (0·61, [0·47–0·79], p=0·0002) and use of a peripherally inserted central catheter (0·65 [0·50–0·86], p=0·0024) or percutaneous central line (0·69 [0·48–1·00], p=0·049) were associated with lower mortality. Interpretation Unacceptable differences in mortality exist for gastrointestinal congenital anomalies between lowincome, middle-income, and high-income countries. Improving access to quality neonatal surgical care in LMICs will be vital to achieve Sustainable Development Goal 3.2 of ending preventable deaths in neonates and children younger than 5 years by 2030

Phytoplankton dynamics in nearshore regions of the western Antarctic Peninsula in relation to a variable frontal zone in the Gerlache Strait

The Gerlache Strait is a narrow channel that separates the western coast of the Antarctic Peninsula (WAP) from the Palmer Archipelago. This area is characterized by the presence of interconnected fjords, bays, islands, and channels that serve as a refuge for megafauna during summer. Through the framework of FjordPhyto – a citizen science collaboration with the International Association of Antarctica Tour Operators (IAATO) vessels – we assessed phytoplankton biomass and composition in surface waters of six under-explored nearshore areas connected to the Gerlache Strait (between 64° and 65° S) during three consecutive seasons, from November to March (2016–2019). During the first two seasons, we found significant differences in the phytoplankton community distribution and successional patterns to the north and south of the sampling area; the greatest differences were evidenced mainly in the months of high biomass, December and January. During December, cryptophytes bloomed in the north, while microplanktonic diatoms dominated in the south, and during January, small centric diatoms dominated in the north, while prasinophytes bloomed in the south. This spatial distinction in phytoplankton communities were mainly associated with the occurrence of a surface thermal front in the Gerlache Strait around 64.5° S. The presence of the front separating warm waters to the north and colder waters to the south, during the months of December to February, was confirmed by the analysis of 10 years of remote sensing data. By contrast, during the third season, low biomass prevailed, and no differences in the phytoplankton composition between the north and south areas were observed. The third season was the coldest of the series, with smaller differences in water temperature north and south of the usual front location. This study shows for the first time a complete overview of the phytoplankton composition throughout the entire growth season (November through March) in the nearshore areas of the WAP between 64° and 65° S. The results of this work contribute to the understanding of the phytoplankton community in relation to small scale physical features during the Antarctic austral summer.Fil: Mascioni, Martina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: Almandoz, Gaston Osvaldo. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: Cusick, Allison. University of California at San Diego; Estados UnidosFil: Pan, B. Jack. California Institute of Technology; Estados UnidosFil: Vernet, Maria. University of California at San Diego; Estados Unido

Microplanktonic diatom assemblages dominated the primary production but not the biomass in an Antarctic fjord

The western Antarctic Peninsula (WAP) fjords, currently threatened by climate change, are known as high krill congregation areas, however, the primary productivity in relation to phytoplankton groups in these coastal areas remains uncertain. To test this, we studied the specific composition, diversity and cellular carbon content of phytoplankton communities in relation to primary production (PP) and growth rates in Andvord Bay, its connection to Gerlache Strait and a near station on the continental shelf during spring (2015) and autumn (2016). Based on the microscopic determination of the relative biomass of the different microalgal taxa we determined three main phytoplankton assemblages that differ in their composition, PP, growth, and spatial and temporal distribution: (1) an assemblage dominated by cryptophytes, with high biomass (59.2 ± 28.2 μgC L−1), intermediate PP (63.1 ± 32 mgC m−3 d−1), and low growth (0.2 ± 1.1 d−1) present in the inner part of the fjord during spring, and related to higher surface water temperatures; (2) an assemblage dominated by micro- planktonic diatoms (mainly Odontella weissflogii) with intermediate biomass (40.1 ± 17.2 μgC L−1), high PP (151.2 ± 62.5 mgC m−3 d−1), and high growth (0.9 ± 1 d−1) present from the fjord mouth to the Gerlache Strait waters during spring and in shelf waters during autumn, related to high irradiance and microzooplankton biomass; and (3) an assemblage dominated by dinoflagellates, mainly small gymnodinioids (< 15 μm long), with low biomass (3.5 ± 3.5 μgC L−1), low PP (6.9 ± 5.1 mgC m−3 d−1), and intermediate growth (0.5 ± 0.6 d−1) present in the whole fjord and the Gerlache Strait during autumn and infrequently during spring, related to high meltwater fraction. During both seasons, the highest phytoplankton biomass, richness and productivity in Andvord Bay was located in a frontal area at the fjord?s mouth. Overall, the results of this study support the notion that WAP fjords are highly productive, highlighting the role of microplanktonic diatom as the main organic carbon producers, even when they occur in low abundances, due to their photosynthetic potential and higher Carbon-to-Chlorophyll a ratio. Our results, together with previous phytoplankton growth rates measured in the WAP nearshore waters from King George Island to Marguerite Bay, are higher than those measured on the WAP shelf and in the Ross Sea suggesting micro- and macronutrient enrichment from glacial melt maintains high productivity throughout the growth season in fjords. Our results support the hypothesis that climate change could highly affect the coastal WAP ecosystems by changing the balance between more productive phyto- plankton assemblages (diatoms) to considerably less productive phytoplankton assemblages (cryptophytes).Fil: Mascioni, Martina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; ArgentinaFil: Almandoz, Gaston Osvaldo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; ArgentinaFil: Ekern, Lindsey. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Pan, B. Jack. University of California at San Diego. Scripps Institution of Oceanography; Estados UnidosFil: Vernet, Maria. University of California at San Diego. Scripps Institution of Oceanography; Estados Unido

Environmental drivers of phytoplankton taxonomic composition in an Antarctic fjord

The impact of ice-ocean interaction on the Southern Ocean is expected to intensify in the future. However, its influence on phytoplankton community composition remains an open question. The Antarctic Peninsula fjords offer an ideal system to understand the effect of ice-ocean forcing on phytoplankton community, providing an extreme in the spatial gradient from the glacio-marine boundary to the Western Antarctic Peninsula (WAP) continental shelf. During two cruises conducted in December 2015 and April 2016 in Andvord Bay, we found that glacial meltwater input altered surface salinity, promoting shallow mixed layers, and enriched surface waters in dissolved iron and nitrate. The three major groups of phytoplankton fueled by glacial input were: cryptophytes, diatoms, and a group of unidentified small flagellates. Prasinophytes and dinoflagellates were also present, in lower concentrations. In December, cryptophytes dominated the phytoplankton community and were correlated with relatively warmer temperatures in the surface layer; in addition, contrary to our hypothesis, no diatom bloom was observed in the fjord in spite of dissolved iron concentration >1 nM. By April, after the growth season, the overall phytoplankton abundance had decreased by an order of magnitude. Phytoplankton, in particular diatoms, were then limited by daytime length despite abundant macro-nutrient and iron concentrations. Mixed flagellates emerged as the dominant group during April due to the decline of other major taxa. Deep-learning algorithms for predicting the abundance of each major phytoplankton group captured the effects of these environmental factors on the phytoplankton community. Our results show that the fjord has relatively high phytoplankton biomass combined with high macro- and trace nutrient concentrations when compared to the broader WAP region. Based on this study, we confirm that flagellates can be the dominant taxon in Antarctic nearshore waters and we propose that iron concentration alone is insufficient to predict diatom growth. Furthermore, marine terminating glaciers in the WAP can enrich surface waters with nitrate even if the main fjord circulation is not driven by glacier meltwater discharge.Fil: Pan, B. Jack. University of California at San Diego; Estados UnidosFil: Vernet, María. University of California at San Diego; Estados UnidosFil: Manck, Lauren. University of California at San Diego; Estados UnidosFil: Forsch, Kiefer. University of California at San Diego; Estados UnidosFil: Ekern, Lindsey. University of California at San Diego; Estados UnidosFil: Mascioni, Martina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: Barbeau, Katherine A.. University of California at San Diego; Estados UnidosFil: Almandoz, Gaston Osvaldo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. División Ficología; ArgentinaFil: Orona, Alexander J.. Ocean Motion Technologies; Estados Unido