Biscay AGL. An observatory for state of the art operational oceanography at IEO. Derived products, sensor networks and future developments.

Since 1991, shelf and slope waters of the Southern Bay of Biscay are regularly sampled in a monthly hydrographical section north of Santander. From 2003, a deep hydrological standard section was included and on June 2007, an ocean-meteorological buoy was moored at the end of Santander Section (www.boya_agl.st.ieo.es). All of three are part of IEOOS (IEO Observing System). Biscay AGL is one observatory for the EU FixO3 project. The combination of these resources leads to a powerful tool, Biscay AGL, which is more than the combination of the AGL Buoy and the hydrographical samplings. This tool produces not only time series of several parameters at different time resolutions but also derived products, both real and delayed time. Derived products from this buoy include, annual cycles as well as anomalous values. In particular ones such as air-sea heat fluxes, salinity and water temperatures anomalies, sub inertial currents series, chlorophyll surface series, estimate of the mixed layer depth and wind and currents roses. Many sensor networks have been deployed to monitor marine environment, and more will follow in the future. Due to the large number of sensor manufacturers, integrating diverse sensors into observation systems is not straightforward. By defining standardized service interfaces it is possible to enable access to sensor networks and archived sensor data that can be discovered and accessed using standard protocols and application programming interfaces. Future developments include the deployment of a full sensor network as well as adding new devices to the Biscay AGL tool in order to achieve deeper knowledge of the ocean

Sensor Networks and derived products at Biscay AGL observatory. State of the art operational oceanography at IEO

Since 1991, shelf and slope waters of the Southern Bay of Biscay are regularly sampled in a monthly hydrographical section north of Santander, and on June 2007, an ocean meteorological buoy was moored at the end of Santander Section (www. boya_agl.st.ieo.es). Both are part of IEOOS (IEO Observing System). Biscay AGL is one observatory for the EU FixO3 project. Many sensor networks have been deployed to monitor marine environment, and more will follow in the future. Due to the large number of sensor technologies, integrating diverse sensors into observation systems is not straightforward. By defining standardized service interfaces (like those based on OGC standards) it is possible to enable access to sensor networks and archived sensor data that can be discovered and accessed using standard protocols and application programming interfaces, therefore complying with the requirements of the INSPIRE directive. Future developments include the deployment of a full sensor network as well as adding new devices to the Biscay AGL tool in order to achieve a deeper knowledge of the ocean. Biscay AGL is more than the combination of the AGL Buoy and the hydrographical samplings. This observatory produces not only time series of several parameters at different time resolutions but also derived products, both in real and in delayed time. Derived products from this buoy include annual cycles as well as anomalies of physical and biogeochemical magnitudes like air-sea heat fluxes, salinity and water temperatures, sub inertial currents, surface chlorophyll. Different products are derived from in-situ measurements at the AGL buoy like estimates of the mixed layer depth, wind and currents roses and wave intensity diagrams

New developments on Biscay-AGL Observatory. From derived products to sensor networks.

Biscay-AGL Observatory. Since 1991, shelf and slope waters of the Southern Bay of Biscay are regularly sampled in a monthly hydrographical section north of Santander to a maximum depth of 2500m, as part of the IEO Radiales program. On June 2007, an ocean-meteorological buoy (AGL) was moored at the end of Santander standard section, 22nm north at 2850m depth, to complete the ocean information with the ocean-atmosphere interaction. All of them are part of IEO Observing System (1). The integrated system of AGL and its nearest hydrographic station (2600m depth) is named Biscay-AGL observatory. It is also one station for the EU FixO3 project. Joint resources and systematic analysis lead to a powerful tool, which is much more than the combination of the AGL buoy and the hydrographical samplings. Data Access. All AGL buoy collected data are added to the local database sited at IEO-Santander in real-time and, after rutinary automatised quality controls, they are immediately available through its dedicated webpage (www.boya_agl.st.ieo.es). Monthly CTDO2 data from the hydrographic section are lab-calibrated in order to obtain acurated values of salinity, dissolved oxygen and density, and added to the long-term time series. Biscay-AGL data are quality controlled, flagged and formatted according internationally agreed standards (2, 3) and routinely sent to the IEO Datacenter. This added-value controlled data are incorporated to the IEO permanent archive and made freely available through the SeaDataNet infrastructure for data access and discovery. Derived products. Data acquired by Biscay-AGL may be displayed as timeseries as usual, but end-users are benefited by derived products which provide direct information. A recently developed software tool produces not only timeseries of several parameters at different time resolutions but also derived products, both real and delayed time. Derived products from this buoy include, but not only, annual cycles as well as anomalous values, air-sea heat fluxes, salinity and water temperature anomalies, subinertial currents series, chlorophyll surface series, estimations of the mixed layer depth and wind and currents roses. Sensor Web Enablement (SWE). Sensor Web infrastructures are setup to access real-time data observed by sensors. This system has been implemented in AGL buoy sensors in order to simplify the retrieved events and alerts triggered through sensors. All those functionalities of the Sensor Web are provided in an interoperable way, following the standards stablished by the Open Geospatial Consortium (OGC). By defining standardized service interfaces, these services hides the heterogeneity of the sensor network, its communication details, enabling the access to archived sensor data that can be discovered and accessed using standard protocols and application programming interfaces

The Spanish Institute of Oceanography Observing System around N and NW Iberia

In the late 80's, the Spanish Institute of Oceanography (IEO) began some ambitious programs of monitoring around the Iberian Peninsula. The coastal observing system core structure was the Radiales program, a series of transects nearby most coastal IEO laboratories where a minimum set of hydrographical, chemical and biological parameters is sampled monthly. The sections are designed to be completed in one-day journeys so the system is supported by quite small vessels, mainly covering the continental shelf with the noteworthy exception of the Santander Section, where the proximity of the shelf-break allows sampling deep waters monthly. During the last 20 years the program has supported many specific scientific research projects and has created a detailed description of seasonal to interannual variability in the coastal ecosystem that serves as a baseline to explore long-term changes or trends...Versión de auto

Both free indole-3-acetic acid and photosynthetic performance are important players in the response of medicago truncatula to urea and ammonium nutrition under axenic conditions

We aimed to identify the early stress response and plant performance of Medicago truncatula growing in axenic medium with ammonium or urea as the sole source of nitrogen, with respect to nitrate-based nutrition. Biomass measurements, auxin content analyses, root system architecture (RSA) response analyses, and physiological parameters were determined. Both ammonium and ureic nutrition severely affected the RSA, resulting in changes in the main elongation rate, lateral root development, and insert position from the root base. The auxin content decreased in both urea- and ammonium-treated roots; however, only the ammonium-treated plants were affected at the shoot level. The analysis of chlorophyll a fluorescence transients showed that ammonium affected photosystem II, but urea did not impair photosynthetic activity. Superoxide dismutase isoenzymes in the plastids were moderately affected by urea and ammonium in the roots. Overall, our results showed that low N doses from different sources had no remarkable effects on M. truncatula, with the exception of the differential phenotypic root response. High doses of both ammonium and urea caused great changes in plant length, auxin contents and physiological measurements. Interesting correlations were found between the shoot auxin pool and both plant length and the "performance index" parameter, which is obtained from measurements of the kinetics of chlorophyll a fluorescence

Estudio de las especies de nitrógeno reactivo en plantas durante el proceso de estrés biótico en la interacción girasol-mildiu

En hipocótilos de plántulas de girasol sensibles y resistentes a la infección por el hongo parásito Plasmopara halstedii, responsable del mildiu, los análisis mediante quimioluminiscencia de ozono revelaron una mayor producción de óxido nítrico en la variedad sensible frente a la resistente, tanto en plantas controles como en plantas inoculadas.La inmunolocalización mediante microscopía de fluorescencia y microscopía confocal láser mostró la localización extensiva de NOS (Óxido nítrico sintasa) y Snitrosoglutation (GSNO) en células parenquimáticas. La lozalización tisular preferente del GSNO en la zona de entrada del patógeno en el hipocótilo, evidencia la posible participación del óxido nítrico en los mecanismos de defensa celulares de respuesta inmediata frente a la invasión por patógenos y antes de la inducción de la producción de óxido nítrico por las proteínas responsables de su generación.El análisis de estos resultados evidencia la presencia en células de hipocótilos de girasol de proteínas tipo NOS y sugiere la participación de la NOS, del óxido nítrico (NO·) y del GSNO en la respuesta de la planta frente al estrés biótico por el hongo Plasmopara halstedii

Bacteria-instructed B cells cross-prime naïve CD8+ T cells triggering effective cytotoxic responses.

In addition to triggering humoral responses, conventional B cells have been described in vitro to cross-present exogenous antigens activating naïve CD8+ T cells. Nevertheless, the way B cells capture these exogenous antigens and the physiological roles of B cell-mediated cross-presentation remain poorly explored. Here, we show that B cells capture bacteria by trans-phagocytosis from previously infected dendritic cells (DC) when they are in close contact. Bacterial encounter "instructs" the B cells to acquire antigen cross-presentation abilities, in a process that involves autophagy. Bacteria-instructed B cells, henceforth referred to as BacB cells, rapidly degrade phagocytosed bacteria, process bacterial antigens and cross-prime naïve CD8+ T cells which differentiate into specific cytotoxic cells that efficiently control bacterial infections. Moreover, a proof-of-concept experiment shows that BacB cells that have captured bacteria expressing tumor antigens could be useful as novel cellular immunotherapies against cancer.We are grateful to advanced light microscopy and cytometry facilities of CNB for technical supporting. The research is supported by grants: SAF2017-84091- R, and PID2020-116393RB-I00/AEI/10.13039/501100011033, financed by MCIN, BFERO2020.04, financed by FERO foundation and PI20/0036 from ISCIII. RGF is supported by BES-2016-076526 from the Spanish Ministry of Economy Industry and Competitiveness, JOP is supported by fellowship LCF/BQ/SO16/ 52270012 from La Caixa, BHF is supported by FPU18/00895 and AMP by FPU18/03199 from Ministry of Science, Innovation and Universities. LdC has been supported by Juan de la Cierva grant IJC2018-035386-I and a contract associated to SEV-2017-0712. EVC, AMP, AMAM, and NMM belong to the Spanish National Research Council (CSIC)’s Cancer Hub. Synopsis image made with biorender.com by Eduardo Roman Camacho and Esteban Veiga. We thanks Prof. Dan Portnoy who kindly provided bacterial strains.S

COMT Val 158 Met polymorphism is associated with nonverbal cognition following mild traumatic brain injury

Mild traumatic brain injury (mTBI) results in variable clinical outcomes, which may be influenced by genetic variation. A single-nucleotide polymorphism in catechol-o-methyltransferase (COMT), an enzyme which degrades catecholamine neurotransmitters, may influence cognitive deficits following moderate and/or severe head trauma. However, this has been disputed, and its role in mTBI has not been studied. Here, we utilize the Transforming Research and Clinical Knowledge in Traumatic Brain Injury Pilot (TRACK-TBI Pilot) study to investigate whether the COMT Val (158) Met polymorphism influences outcome on a cognitive battery 6 months following mTBI--Wechsler Adult Intelligence Test Processing Speed Index Composite Score (WAIS-PSI), Trail Making Test (TMT) Trail B minus Trail A time, and California Verbal Learning Test, Second Edition Trial 1-5 Standard Score (CVLT-II). All patients had an emergency department Glasgow Coma Scale (GCS) of 13-15, no acute intracranial pathology on head CT, and no polytrauma as defined by an Abbreviated Injury Scale (AIS) score of ≥3 in any extracranial region. Results in 100 subjects aged 40.9 (SD 15.2) years (COMT Met (158) /Met (158) 29 %, Met (158) /Val (158) 47 %, Val (158) /Val (158) 24 %) show that the COMT Met (158) allele (mean 101.6 ± SE 2.1) associates with higher nonverbal processing speed on the WAIS-PSI when compared to Val (158) /Val (158) homozygotes (93.8 ± SE 3.0) after controlling for demographics and injury severity (mean increase 7.9 points, 95 % CI [1.4 to 14.3], p = 0.017). The COMT Val (158) Met polymorphism did not associate with mental flexibility on the TMT or with verbal learning on the CVLT-II. Hence, COMT Val (158) Met may preferentially modulate nonverbal cognition following uncomplicated mTBI.Registry: ClinicalTrials.gov Identifier NCT01565551

Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis

Allergic rhinitis is the most common clinical presentation of allergy, affecting 400 million people worldwide, with increasing incidence in westernized countries1,2. To elucidate the genetic architecture and understand the underlying disease mechanisms, we carried out a meta-analysis of allergic rhinitis in 59,762 cases and 152,358 controls of European ancestry and identified a total of 41 risk loci for allergic rhinitis, including 20 loci not previously associated with allergic rhinitis, which were confirmed in a replication phase of 60,720 cases and 618,527 controls. Functional annotation implicated genes involved in various immune pathways, and fine mapping of the HLA region suggested amino acid variants important for antigen binding. We further performed genome-wide association study (GWAS) analyses of allergic sensitization against inhalant allergens and nonallergic rhinitis, which suggested shared genetic mechanisms across rhinitis-related traits. Future studies of the identified loci and genes might identify novel targets for treatment and prevention of allergic rhinitis

Role of PTPN22 and CSK gene polymorphisms as predictors of susceptibility and clinical heterogeneity in patients with Henoch-Schönlein purpura (IgA vasculitis)

INTRODUCTION: To determine whether the PTPN22 (protein tyrosine phosphatase nonreceptor 22)/CSK (c-src tyrosine kinase) pathway is implicated in the susceptibility and clinical heterogeneity of Henoch-Schönlein purpura (HSP) in the largest series of Caucasian HSP patients ever assessed for genetic studies. METHODS: A set of 329 Spanish patients diagnosed with HSP fulfilling the American College of Rheumatology and the Michel et al. classification criteria and 515 sex and ethnically matched controls were recruited in this study. Two well-known CSK (CSK rs34933034 and CSK rs1378942) and two functional PTPN22 (PTPN22 rs2476601 (R620W) and PTPN22 rs33996649 (R263Q)) polymorphisms, previously associated with autoimmunity, were genotyped with TaqMan single nucleotide polymorphism (SNP) genotyping assays. RESULTS: No significant differences in the genotype and allele frequencies between HSP patients and controls were observed when the CSK rs34933034, CSK rs1378942, PTPN22 rs2476601 (R620W) and PTPN22 rs33996649 (R263Q) polymorphisms were analyzed independently. In keeping with this observation, no significant differences were found when we assessed these polymorphisms combined conforming haplotypes. In addition, there were no differences in the allele or genotype frequencies when HSP patients were stratified according the age at disease onset, sex, presence of arthralgia/arthritis, nephritis or gastrointestinal manifestations. CONCLUSIONS: Our results do not support association between PTPN22/CSK and HSP