Physiological effects of KDM5C on neural crest migration and eye formation during vertebrate development

Background: Lysine-specific histone demethylase 5C (KDM5C) belongs to the jumonji family of demethylases and is specific for the di- and tri-demethylation of lysine 4 residues on histone 3 (H3K4 me2/3). KDM5C is expressed in the brain and skeletal muscles of humans and is associated with various biologically significant processes. KDM5C is known to be associated with X-linked mental retardation and is also involved in the development of cancer. However, the developmental significance of KDM5C has not been explored yet. In the present study, we investigated the physiological roles of KDM5C during Xenopus laevis embryonic development. Results: Loss-of-function analysis using kdm5c antisense morpholino oligonucleotides indicated that kdm5c knockdown led to small-sized heads, reduced cartilage size, and malformed eyes (i.e., small-sized and deformed eyes). Molecular analyses of KDM5C functional roles using whole-mount in situ hybridization, -galactosidase staining, and reverse transcription-polymerase chain reaction revealed that loss of kdm5c resulted in reduced expression levels of neural crest specifiers and genes involved in eye development. Furthermore, transcriptome analysis indicated the significance of KDM5C in morphogenesis and organogenesis. Conclusion: Our findings indicated that KDM5C is associated with embryonic development and provided additional information regarding the complex and dynamic gene network that regulates neural crest formation and eye development. This study emphasizes the functional significance of KDM5C in Xenopus embryogenesis; however, further analysis is needed to explore the interactions of KDM5C with specific developmental genes

Ευρετικές προσεγγίσεις του μοναδιάστατου προβλήματος πακετοποίησης

Article 59.1, of the International Code of Nomenclature for Algae, Fungi, and Plants (ICN; Melbourne Code), which addresses the nomenclature of pleomorphic fungi, became effective from 30 July 2011. Since that date, each fungal species can have one nomenclaturally correct name in a particular classification. All other previously used names for this species will be considered as synonyms. The older generic epithet takes priority over the younger name. Any widely used younger names proposed for use, must comply with Art. 57.2 and their usage should be approved by the Nomenclature Committee for Fungi (NCF). In this paper, we list all genera currently accepted by us in Dothideomycetes (belonging to 23 orders and 110 families), including pleomorphic and non-pleomorphic genera. In the case of pleomorphic genera, we follow the rulings of the current ICN and propose single generic names for future usage. The taxonomic placements of 1261 genera are listed as an outline. Protected names and suppressed names for 34 pleomorphic genera are listed separately. Notes and justifications are provided for possible proposed names after the list of genera. Notes are also provided on recent advances in our understanding of asexual and sexual morph linkages in Dothideomycetes. A phylogenetic tree based on four gene analyses supported 23 orders and 75 families, while 35 families still lack molecular data

Non-pollen palynomorphs notes: 2. Holocene record of Megalohypha aqua - dulces , its relation to the fossil form genus Fusiformisporites and association with lignicolous freshwater fungi

International audienceThe first Holocene record of the freshwater ascomycete Megalohypha aqua-dulces from the sediment core Kongor (NE Iran) is presented here. Based on the similarity of the spore morphology with the fossil form genus Fusiformisporites, we establish a link between extant and fossil taxa. Comparative analysis of morphological characteristics of fossil spores of Fusiformisporites indicates that several different fungal groups might be included in this form genus. At least five species of Fusiformisporites share similar morphology with spores of Megalohypha aqua-dulces: Fusiformisporites annafrancescae, Fusiformisporites crabbii, Fusiformisporites keralensis, Fusiformisporites paucistriatus, and Fusiformisporites pseudocrabbii. Based on Fusiformisporites, the evolution of Megalohypha aqua-dulces can be traced to the late Cretaceous, corresponding with diversification of the flowering plants and pointing to a co-evolution of both groups. Megalohypha aqua-dulces has a tropical to subtropical distribution but also occurs in the semi-arid steppe environments of Kongor together with other freshwater fungal genera such as Xylomyces, Dictyosporium, and Sporoschisma, which spores we describe here. The ecological requirements of Megalohypha indicate that its spores can be used for the palaeoecological sign of dead submerged wood as well as of tropical to subtropical conditions