20 research outputs found

    Collaborative relation annotation and quality analysis in Markyt environment

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    Text mining is showing potential to help in biomedical knowledge integration and discovery at various levels. However, results depend largely on the specifics of the knowledge problem and, in particular, on the ability to produce high-quality benchmarking corpora that may support the training and evaluation of automatic prediction systems. Annotation tools enabling the flexible and customizable production of such corpora are thus pivotal. The open-source Markyt annotation environment brings together the latest web technologies to offer a wide range of annotation capabilities in a domain-agnostic way. It enables the management of multi-user and multi-round annotation projects, including inter-annotator agreement and consensus assessments. Also, Markyt supports the description of entity and relation annotation guidelines on a project basis, being flexible to partial word tagging and the occurrence of annotation overlaps. This paper describes the current release of Markyt, namely new annotation perspectives, which enable the annotation of relations among entities, and enhanced analysis capabilities. Several demos, inspired by public biomedical corpora, are presented as means to better illustrate such functionalities. Markyt aims to bring together annotation capabilities of broad interest to those producing annotated corpora. Markyt demonstration projects describe 20 different annotation tasks of varied document sources (e.g. abstracts, twitters or drug labels) and languages (e.g. English, Spanish or Chinese). Continuous development is based on feedback from practical applications as well as community reports on short- and medium-term mining challenges. Markyt is freely available for non-commercial use at http://markyt.org.This work was partially supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER-006684). The authors also acknowledge the PhD grants of M.P.-P. and G.P.-R., funded by the Xunta de Galicia.info:eu-repo/semantics/publishedVersio

    Estimating the p-mode frequencies of the solar twin 18 Sco

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    Solar twins have been a focus of attention for more than a decade, because their structure is extremely close to that of the Sun. Today, thanks to high-precision spectrometers, it is possible to use asteroseismology to probe their interiors. Our goal is to use time series obtained from the HARPS spectrometer to extract the oscillation frequencies of 18 Sco, the brightest solar twin. We used the tools of spectral analysis to estimate these quantities. We estimate 52 frequencies using an MCMC algorithm. After examination of their probability densities and comparison with results from direct MAP optimization, we obtain a minimal set of 21 reliable modes. The identification of each pulsation mode is straightforwardly accomplished by comparing to the well-established solar pulsation modes. We also derived some basic seismic indicators using these values. These results offer a good basis to start a detailed seismic analysis of 18 Sco using stellar models.Comment: 12 pages, 6 figures, to be published in A&

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