Le parfum de la défense des plantes en forêt amazonienne

L'objectif de cette thèse était d'étudier différents aspects de l'écologie et de l'évolution des traits de défense des arbres tropicaux. Dans une première partie, j'ai mis en évidence l'importance et la diversité des composés organiques volatils (COVs) dans la défense des arbres tropicaux en étudiant les différences intra et interspécifiques dans le mélange de composés émis. De futures études centrées sur ces composés devraient permettre d'améliorer nos connaissances sur leur importance écologique et évolutive dans les interactions entre les plantes et les herbivores en milieu tropical. Dans une deuxième partie, j'ai mis en évidence un changement dans la distribution des traits foliaires liés à la défense et à l'efficacité de la photosynthèse entre les communautés de plantules dans le sous-bois et les communautés d'arbres de canopée : les arbres adultes possèdent des feuilles plus dures, plus denses et avec de plus grandes quantités d'azote et de phosphore que les plantules.The main objective of this PhD was to study several aspects of the ecology and evolution of defensive traits in tropical tree species. In a first part of this PhD, I highlighted the importance of Volatile Organic Compounds VOCs in the defense of tropical trees by studying intra and interspecific differences in the mixture of compounds. Future studies focused on these compounds should help improve our understanding of their ecological and evolutionary importance in plant-herbivore interactions. In a second part, I studied leaf functional traits linked to defense and photosynthesis in tropical sapling and tree communities and showed that adult trees tend to possess tougher and denser leaves with a higher nitrogen and phosphorous content

Estimativas populacionais de Dendrobates tinctorius (Anura: Dendrobatidae) em três áreas da Guiana Francesa e primeiro relato de quitridiomicose.

A região Neotropical abriga o maior número de espécies de anuros da Terra e é também uma das regiões em que os anfíbios estão mais ameaçados. No entanto, poucos dados estão atualmente disponíveis para avaliar a situação daspopulações de anfíbios neotropicais. Estudamos três populações de Dendrobates tinctorius na Guiana Francesa (Tresor, Favard e Nouragues) usando o modelo de Captura-Marcação-Recaptura (CMR) para a realização de estimativas robustas da densidade da espécie nesses três locais. Além disso, avaliamos a prevalência do fungo patogênico Batrachochytrium dendrobatidis (Bd) em duaspopulações (Favard and Nouragues). O uso do modelo CMR revelou uma densidade de 4,67 indivíduos/100 m² para Tresor, 8,43 indivíduos/100 m² para Favard e 4,28 indivíduos/100 m² para Nouragues, fornecendo estimativas das densidades populacionais de D. tinctorius na Guiana Francesa com as quais estimativas populacionais futuras poderão ser comparadas. Constatamos que 25 ocasiões de encontro podem ser suficientes para estimativas de uma população estável se as capturas forem concentradas no tempo. Bd foi detectado em ambas as áreas (Favard 7/152, Nouragues 3/18). Propomos, portanto, o início de um acompanhamento de longa-duração dessa espécie em vários locais (dentro e fora de áreas protegidas) da Guiana Francesa, combinando estudos de CMR com ocasiões de encontros concentrados em um curto período de tempo e o monitoramento de Bd.The Neotropics shelter the highest number of frog species on Earth and is also one of the regions where anurans aremost threatened. Nonetheless, few data are available to assess the population status of Neotropical anurans. We studied three populations (Tresor, Favard, and Nouragues) of the poison frog, Dendrobates tinctorius, in French Guiana and used Capture-Mark-Recapture (CMR) to make robust estimations of the species’ density at these three sites. In addition, we assessed the prevalence of the pathogen fungal Batrachochytrium dendrobatidis (Bd) in two populations (Favard and Nouragues). Based on the CMR protocol, the densities of frogs was 8.43 individuals/100 m² at Favard, 4.28 individuals/100 m² at Nouragues and from 2.30 to 4.67 individuals/100 m² at Tresor (depending on the CMR model used); these data provide a baseline for population densities of D. tinctorius in French Guiana, against which future population estimates can be compared. We found that 25 encounter events may be sufficient for stable population estimates, if the captures are concentrated in time. Bd was detected at both sites (Favard 7/152; Nouragues 3/18)

Influence of step structure on preferred orientation relationships of Ag deposited on Ni(111)

Previous studies have shown that the orientation relationships which develop in hetero-epitaxy are strongly influenced by the alignment of steps in the deposit with the pre-existing steps of the substrate. In this paper we use a combination of experiments with computer simulations to identify the important influence of substrate step structure on the eventual orientation relationships that develop in the deposit. We have made use of Ag deposited on Ni as it has been used extensively as a model system for the study of hetero-epitaxy. This system displays a large lattice mismatch of 16%. It is shown that on any surface vicinal to Ni(111), which has two possible kinds of steps (A-steps with {100} ledges and B-steps with {111} ledges), a Ag deposit adopts a single orientation relationship because only A-steps remain stable in the presence of Ag.Comment: Acta Materialia, Elsevier, In pres

NO signaling functions in the biotic and abiotic stress responses

In the last 1990s, NO became an increasingly popular target of investigation in plants. As in mammals, NO fulfils a broad spectrum of signalling functions in pathophysiological processes in plants. Here we summarize studies published in recent years that provide novel insights into the signalling functions of NO produced by plant cells exposed to abiotic stresses and biotic stress (pathogen-derived elicitors). Particularly, we report that NO emerges as a key messenger governing the overall control of Ca2+ homeostasis. Although the precise signalling functions of NO are poorly understood, its capacity to modulate Ca2+ homeostasis provides an extraordinary and remarkable effective way of conveying information

Weak warning signals can persist in the absence of gene flow

Aposematic organisms couple conspicuous warning signals with a secondary defense to deter predators from attacking. Novel signals of aposematic prey are expected to be selected against due to positive frequency-dependent selection. How, then, can novel phenotypes persist after they arise, and why do so many aposematic species exhibit intrapopulation signal variability? Using a polytypic poison frog (Dendrobates tinctorius), we explored the forces of selection on variable aposematic signals using 2 phenotypically distinct (white, yellow) populations. Contrary to expectations, local phenotype was not always better protected compared to novel phenotypes in either population; in the white population, the novel phenotype evoked greater avoidance in natural predators. Despite having a lower quantity of alkaloids, the skin extracts from yellow frogs provoked higher aversive reactions by birds than white frogs in the laboratory, although both populations differed from controls. Similarly, predators learned to avoid the yellow signal faster than the white signal, and generalized their learned avoidance of yellow but not white. We propose that signals that are easily learned and broadly generalized can protect rare, novel signals, and weak warning signals (i.e., signals with poor efficacy and/or poor defense) can persist when gene flow among populations, as in this case, is limited. This provides a mechanism for the persistence of intrapopulation aposematic variation, a likely precursor to polytypism and driver of speciation

Autophagy induced by Helicobacter pylori infection is necessary for gastric cancer stem cell emergence

Background: The main cause of gastric cancer is the infection by the bacterium Helicobacter pylori which induces a chronic inflammation and an epithelial-to-mesenchymal transition (EMT) leading to the emergence of cells with cancer stem cell (CSC) properties. However, the underlying mechanisms have not been fully characterized. Moreover, H. pylori modulates the host cell autophagic process, but a few studies have investigated the role of this process in tumoral transformation. The aim of this study was to determine whether H. pylori-induced autophagy has a role in CSC emergence. Methods: Autophagic flux in response to H. pylori infection was characterized in AGS cell line expressing the tandem-tagged mCherry-GFP-LC3 protein and using a ratiometric flow cytometry analysis. Then, AGS and MKN45 cell lines were treated with bafilomycin or chloroquine, two pharmaceutical well-known inhibitors of autophagy, and different EMT and CSC characteristics were analyzed. Results: First, a co-expression of the gastric CSC marker CD44 and the autophagic marker LC3 in mice and human stomach tissues infected with H. pylori was observed. Then, we demonstrated in vitro that H. pylori was able to activate the autophagy process with a reduced autophagic flux. Finally, infected cells were treated with autophagy inhibitors, which reduced (i) appearance of mesenchymal phenotypes and migration ability related to EMT and (ii) CD44 expression as well as tumorsphere formation capacities reflecting CSC properties. Conclusion: In conclusion, all these data show that H. pylori-induced autophagy is implicated in gastric CSC emergence and could represent an interesting therapeutic target.This work was supported by the French foundation Ligue contre le Cancer (Pyrénées Atlantiques)

Extending the known distribution of Nicosia’s chameleon, Furcifer nicosiai Jesu, Mattioli & Schimmenti, 1999 (Squamata: Chamaeleonidae)

info:eu-repo/semantics/publishedVersio

Evolutionary patterns of volatile terpene emissions across 202 tropical tree species

International audiencePlant responses to natural enemies include formation of secondary metabolites acting as direct or indirect defenses. Volatile terpenes represent one of the most diverse groups of secondary metabolites. We aimed to explore evolutionary patterns of volatile terpene emission. We measured the composition of damage-induced volatile terpenes from 202 Amazonian tree species, spanning the angiosperm phylogeny. Volatile terpenes were extracted with solid-phase micro extraction and desorbed in a gas chromatography–mass spectrometry for compound identification. The chemical diversity of the terpene blend showed a strong phylogenetic signal as closely related species emitted a similar number of compounds. Closely related species also tended to have compositionally similar blends, although this relationship was weak. Meanwhile, the ability to emit a given compound showed no significant phylogenetic signal for 200 of 286 compounds, indicating a high rate of diversification in terpene synthesis and/or great variability in their expression. Three lineages (Magnoliales, Laurales, and Sapindales) showed exceptionally high rates of terpene diversification. Of the 70 compounds found in >10% of their species, 69 displayed significant correlated evolution with at least one other compound. These results provide insights into the complex evolutionary history of volatile terpenes in angiosperms, while highlighting the need for further research into this important class of compounds

Construction of chromosome segment substitution lines in peanut (Arachis hypogaea L.) using a wild synthetic and QTL mapping for plant morphology

Chromosome segment substitution lines (CSSLs) are powerful QTL mapping populations that have been used to elucidate the molecular basis of interesting traits of wild species. Cultivated peanut is an allotetraploid with limited genetic diversity. Capturing the genetic diversity from peanut wild relatives is an important objective in many peanut breeding programs. In this study, we used a marker-assisted backcrossing strategy to produce a population of 122 CSSLs from the cross between the wild synthetic allotetraploid (A. ipae¨nsis6A. duranensis)4x and the cultivated Fleur11 variety. The 122 CSSLs offered a broad coverage of the peanut genome, with target wild chromosome segments averaging 39.2 cM in length. As a demonstration of the utility of these lines, four traits were evaluated in a subset of 80 CSSLs. A total of 28 lines showed significant differences from Fleur11. The line6trait significant associations were assigned to 42 QTLs: 14 for plant growth habit, 15 for height of the main stem, 12 for plant spread and one for flower color. Among the 42 QTLs, 37 were assigned to genomic regions and three QTL positions were considered putative. One important finding arising from this QTL analysis is that peanut growth habit is a complex trait that is governed by several QTLs with different effects. The CSSL population developed in this study has proved efficient for deciphering the molecular basis of trait variations and will be useful to the peanut scientific community for future QTL mapping studies. (Résumé d'auteur

Two parallel pathways connect glutamine metabolism and mTORC1 activity to regulate glutamoptosis.

Glutamoptosis is the induction of apoptotic cell death as a consequence of the aberrant activation of glutaminolysis and mTORC1 signaling during nutritional imbalance in proliferating cells. The role of the bioenergetic sensor AMPK during glutamoptosis is not defined yet. Here, we show that AMPK reactivation blocks both the glutamine-dependent activation of mTORC1 and glutamoptosis in vitro and in vivo. We also show that glutamine is used for asparagine synthesis and the GABA shunt to produce ATP and to inhibit AMPK, independently of glutaminolysis. Overall, our results indicate that glutamine metabolism is connected with mTORC1 activation through two parallel pathways: an acute alpha-ketoglutarate-dependent pathway; and a secondary ATP/AMPK-dependent pathway. This dual metabolic connection between glutamine and mTORC1 must be considered for the future design of therapeutic strategies to prevent cell growth in diseases such as cancer.This work was supported by funds from the following institutions: Agencia Estatal de Investigación/European Regional Development Fund, European Union (PGC2018-096244- B-I00, SAF2016-75442-R), Ministry of Science, Innovation and Universities of Spain, Spanish National Research Council—CSIC, Institut National de la Santé et de la Recherche Médicale —INSERM, Université de Bordeaux, Fondation pour la Recherche Médicale, the Conseil Régional d’Aquitaine, SIRIC-BRIO, Fondation ARC, and Institut Européen de Chimie et Biologie. C.B. was recipient of fellowships from the Minister of Higher Education, Research and Innovation (France) and the Fondation ARC (France). We thank Prof. Patricia Boya (Centro de Investigaciones Biologicas, Madrid, Spain) for kindly providing with the ATG5+/+ and ATG5−/− MEFs. We thank Prof. Benoit Viollet (Institute Cochin, Paris, France) for kindly providing with the AMPK+/+ and AMPK−/− MEFs, and the CA-AMPK plasmid