3,599 research outputs found
Phylogenetic distance does not predict competition in green algal communities
Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/116355/1/ecs214005021.pd
How Does Restored Habitat For Chinook Salmon ( Oncorhynchus Tshawytscha ) In The Merced River In California Compare With Other Chinook Streams?
The amount of time and money spent on restoring rivers for declining populations of salmon has grown substantially in recent decades. But despite the infusion of resources, many studies suggest that salmon populations are continuing to decline, leading some to question the effectiveness of restoration efforts. Here we examine whether a particular form of salmon restorationâchannel reconfiguration with gravel augmentationâgenerates physical and biological habitat that is comparable with other streams that support salmon. We compared a suite of habitat features known to influence the various life stages of Chinook salmon in a restoration project in California's Merced River with 19 other streams that also support Chinook that we surveyed in the same geographic region. Our survey showed that riffle habitats in the restored site of the Merced River have flow discharge and depth, substrate and food web characteristics that cannot be distinguished from other streams that support Chinook, suggesting that these factors are unlikely to be bottlenecks to salmon recovery in the Merced. However, compared with other streams in the region, the Merced has minimal riparian cover, fewer undercut banks, less woody debris and higher water temperatures, suggesting that these factors might limit salmon recovery. After identifying aspects in the Merced that differ from other streams, we used principal components analysis to correlate salmon densities to independent axes of environmental variation measured during our survey. These analyses suggested that salmon densities tend to be greatest in streams that have more undercut banks and woody debris and lower water temperatures. These are the same environmental factors that appear to be missing from the Merced River restoration effort. Collectively, our results narrow the set of candidate factors that may limit salmon recovery in channel reconfiguration restoration efforts. Copyright © 2012 John Wiley & Sons, Ltd.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/97512/1/rra1604.pd
Diversity and community biomass depend on dispersal and disturbance in microalgal communities
The evidence for species diversity effects
on ecosystem functions is mainly based on studies not
explicitly addressing local or regional processes
regulating coexistence or the importance of community
structure in terms of species evenness. In experimental
communities of marine benthic microalgae,
we altered the successional stages and thus the strength
of local species interactions by manipulating rates of
dispersal and disturbance. The treatments altered
realized species richness, evenness and community
biomass. For species richness, dispersal mattered only
at high disturbance rates; when opening new space,
dispersal led to maximized richness at intermediate
dispersal rates. Evenness, in contrast, decreased with
dispersal at low or no disturbance, i.e. at late successional stages. Community biomass showed a nonlinear
hump-shaped response to increasing dispersal at
all disturbance levels.We found a positive correlation
between richness and biomass at early succession, and
a strong negative correlation between evenness and
biomass at late succession. In early succession both
community biomass and richness depend directly on
dispersal from the regional pool, whereas the late
successional pattern shows that if interactions allow
the most productive species to become dominant,
diverting resources from this species (i.e. higher
evenness) reduces production. Our study emphasizes
the difference in biodiversityâfunction relationships
over time, as different mechanisms contribute to the
regulation of richness and evenness in early and late
successional stages
Tertiary-Treated Municipal Wastewater is a Significant Point Source of Antibiotic Resistance Genes Into Duluth-Superior Harbor
In this study, the impact of tertiary-treated municipal wastewater on the quantity of several antibiotic resistance determinants in Duluth-Superior Harbor was investigated by collecting surface water and sediment samples from 13 locations in Duluth-Superior Harbor, the St. Louis River, and Lake Superior. Quantitative PCR (qPCR) was used to target three different genes encoding resistance to tetracycline (tet(A), tet(X), and tet(W)), the gene encoding the integrase of class 1 integrons (intI1), and total bacterial abundance (16S rRNA genes) as well as total and human fecal contamination levels (16S rRNA genes specific to the genus Bacteroides). The quantities of tet(A), tet(X), tet(W), intI1, total Bacteroides, and human-specific Bacteroides were typically 20-fold higher in the tertiary-treated wastewater than in nearby surface water samples. In contrast, the quantities of these genes in the St. Louis River and Lake Superior were typically below detection. Analysis of sequences of tet(W) gene fragments from four different samples collected throughout the study site supported the conclusion that tertiary-treated municipal wastewater is a point source of resistance genes into Duluth-Superior Harbor. This study demonstrates that the discharge of exceptionally treated municipal wastewater can have a statistically significant effect on the quantities of antibiotic resistance genes in otherwise pristine surface waters
Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a reâexamination of 16 grassland biodiversity studies
Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/111813/1/fec12432.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/111813/2/fec12432-sup-0002-Suppinfo.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/111813/3/fec12432-sup-0001-LaySummary.pd
Stronger diversity effects with increased environmental stress : a study of multitrophic interactions between oak, powdery mildew and ladybirds
Recent research has suggested that increasing neighbourhood tree species diversity may mitigate the impact of pests or pathogens by supporting the activities of their natural enemies and/or reducing the density of available hosts. In this study, we attempted to assess these mechanisms in a multitrophic study system of young oak (Quercus), oak powdery mildew (PM, caused by Erysiphe spp.) and a mycophagous ladybird (Psyllobora vigintiduo-punctata). We assessed ladybird mycophagy on oak PM in function of different neighbourhood tree species compositions. We also evaluated whether these species interactions were modulated by environmental conditions as suggested by the Stress Gradient Hypothesis. We adopted a complementary approach of a field experiment where we monitored oak saplings subjected to a reduced rainfall gradient in a young planted forest consisting of different tree species mixtures, as well as a lab experiment where we independently evaluated the effect of different watering treatments on PM infections and ladybird mycophagy. In the field experiment, we found effects of neighbourhood tree species richness on ladybird mycophagy becoming more positive as the target trees received less water. This effect was only found as weather conditions grew drier. In the lab experiment, we found a preference of ladybirds to graze on infected leaves from trees that received less water. We discuss potential mechanisms that might explain this preference, such as emissions of volatile leaf chemicals. Our results are in line with the expectations of the Natural Enemies Hypothesis and support the hypothesis that biodiversity effects become stronger with increased environmental stress
Analysis and modelling of muscles motion during whole body vibration
The aim of the study is to characterize the local muscles motion in individuals undergoing whole body mechanical stimulation. In this study we aim also to evaluate how subject positioning modifies vibration dumping, altering local mechanical stimulus. Vibrations were delivered to subjects by the use of a vibrating platform, while stimulation frequency was increased linearly from 15 to 60Hz. Two different subject postures were here analysed. Platform and muscles motion were monitored using tiny MEMS accelerometers; a contra lateral analysis was also presented. Muscle motion analysis revealed typical displacement trajectories: motion components were found not to be purely sinusoidal neither in phase to each other. Results also revealed a mechanical resonant-like behaviour at some muscles, similar to a second-order system response. Resonance frequencies and dumping factors depended on subject and his positioning. Proper mechanical stimulation can maximize muscle spindle solicitation, which may produce a more effective muscle activation
Using synthetic biological parts and microbioreactors to explore the protein expression characteristics of Escherichia coli
Synthetic
biology has developed numerous parts for the precise
control of protein expression. However, relatively little is known
about the burden these place on a host, or their reliability under
varying environmental conditions. To address this, we made use of
synthetic transcriptional and translational elements to create a combinatorial
library of constructs that modulated expression strength of a green
fluorescent protein. Combining this library with a microbioreactor
platform, we were able to perform a detailed large-scale assessment
of transient expression and growth characteristics of two <i>Escherichia coli</i> strains across several temperatures. This
revealed significant differences in the robustness of both strains
to differing types of protein expression, and a complex response of
transcriptional and translational elements to differing temperatures.
This study supports the development of reliable synthetic biological
systems capable of working across different hosts and environmental
contexts. Plasmids developed during this work have been made publicly
available to act as a reference set for future research
Fitness efficacy of vibratory exercise compared to walking in postmenopausal women
In this study, we compared the efficacy of 8 months of low-frequency vibration and a walk-based program in health-related fitness. Twenty-seven postmenopausal women were randomly assigned into two groups: whole-body vibration (WBV) group (n = 18) performed three times/week a static exercise on a vibration platform (6 sets of 1-min with 1 min of rest, with a 12.6 Hz of frequency and an amplitude of 3 mm); walk-based program (WP) group (n = 18) performed three times/week a 60-min of walk activity at 70-75% of maximal heart rate. A health-related battery of tests was applied. Maximal unilateral concentric and eccentric isokinetic torque of the knee extensors was recorded by an isokinetic dynamometer. Physical fitness was measured using the following tests: vertical jump test, chair rise test and maximal walking speed test over 4 m. Maximal unilateral isokinetic strength was measured in the knee extensors in concentric actions at 60 and 300 degrees /s, and eccentric action at 60 degrees /s. After 8 months, the WP improved the time spent to walk 4 m (20%) and to perform the chair rise test (12%) compared to the WBV group (P = 0.006, 0.002, respectively). In contrast, the comparison of the changes in vertical jump showed the higher effectiveness of the vibratory exercise in 7% (P = 0.025). None of exercise programs showed change on isokinetic measurements. These results indicate that both programs differed in the main achievements and could be complementary to prevent lower limbs muscle strength decrease as we age [ISRCTN76235671]
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