A global analysis of Y-chromosomal haplotype diversity for 23 STR loci

In a worldwide collaborative effort, 19,630 Y-chromosomes were sampled from 129 different populations in 51 countries. These chromosomes were typed for 23 short-tandem repeat (STR) loci (DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS385ab, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, GATAH4, DYS481, DYS533, DYS549, DYS570, DYS576, and DYS643) and using the PowerPlex Y23 System (PPY23, Promega Corporation, Madison, WI). Locus-specific allelic spectra of these markers were determined and a consistently high level of allelic diversity was observed. A considerable number of null, duplicate and off-ladder alleles were revealed. Standard single-locus and haplotype-based parameters were calculated and compared between subsets of Y-STR markers established for forensic casework. The PPY23 marker set provides substantially stronger discriminatory power than other available kits but at the same time reveals the same general patterns of population structure as other marker sets. A strong correlation was observed between the number of Y-STRs included in a marker set and some of the forensic parameters under study. Interestingly a weak but consistent trend toward smaller genetic distances resulting from larger numbers of markers became apparent.Peer reviewe

Multiplex polymerase chain reaction to identify and determine the toxigenicity of Corynebacterium spp with zoonotic potential and an overview of human and animal infections

Corynebacterium diphtheriae, Corynebacterium ulcerans and Corynebacterium pseudotuberculosis constitute a group of potentially toxigenic microorganisms that are related to different infectious processes in animal and human hosts. Currently, there is a lack of information on the prevalence of disease caused by these pathogens, which is partially due to a reduction in the frequency of routine laboratory testing. In this study, a multiplex polymerase chain reaction (mPCR) assay that can simultaneously identify and determine the toxigenicity of these corynebacterial species with zoonotic potential was developed. This assay uses five primer pairs targeting the following genes: rpoB (Corynebacterium spp), 16S rRNA (C. ulcerans and C. pseudotuberculosis), pld (C. pseudotuberculosis), dtxR (C. diphtheriae) and tox [diphtheria toxin (DT) ]. In addition to describing this assay, we review the literature regarding the diseases caused by these pathogens. Of the 213 coryneform strains tested, the mPCR results for all toxigenic and non-toxigenic strains of C . diphtheriae, C. ulcerans and C. pseudotuberculosis were in 100% agreement with the results of standard biochemical tests and PCR-DT. As an alternative to conventional methods, due to its advantages of specificity and speed, the mPCR assay used in this study may successfully be applied for the diagnosis of human and/or animal diseases caused by potentially toxigenic corynebacterial species

Analysis of HCV quasispecies dynamic under selective pressure of combined therapy

Background: the quasispecies composition of Hepatitis C virus (HCV) could have important implications with regard to viral persistence and response to interferon-based therapy. the complete NS5A was analyzed to evaluate whether the composition of NS5A quasispecies of HCV 1a/1b is related to responsiveness to combined interferon pegylated (PEG-IFN) and ribavirin therapy.Methods: Viral RNA was isolated from serum samples collected before, during and after treatment from virological sustained responder (SVR), non-responder (NR) and the end-of-treatment responder patients (ETR). NS5A region was amplified, cloned and sequenced. Six hundred and ninety full-length NS5A sequences were analyzed.Results: This study provides evidence that lower nucleotide diversity of the NS5A region pre-therapy is associated with viral clearance. Analysis of samples of NRs and the ETRs time points showed that genetic diversity of populations tend to decrease over time. Post-therapy population of ETRs presented higher genetic distance from baseline probably due to the bottleneck phenomenon observed for those patients in the end of treatment. the viral effective population of those patients also showed a strong decrease after therapy. Otherwise, NRs demonstrated a continuous variation or stability of effective populations and genetic diversity over time that did not seem to be related to therapy. Phylogenetic relationships concerning complete NS5A sequences obtained from patients did not demonstrate clustering associated with specific response patterns. However, distinctive clustering of pre/post-therapy sequences was observed. in addition, the evolution of quasispecies over time was subjected to purifying or relaxed purifying selection. Codons 157 (P03), 182 and 440 (P42), 62 and 404 (P44) were found to be under positive selective pressure but it failed to be related to the therapy.Conclusion: These results confirm the hypothesis that a relationship exists between NS5A heterogeneity and response to therapy in patients infected with chronic hepatitis C.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)São Paulo State Univ, Dept Biol, Inst Biosci Language & Exact Sci, Sao Jose Do Rio Preto, SP, BrazilUniversidade Federal de São Paulo, Div Gastroenterol, Lab Appl Mol Hepatol, Hepatitis Sect, São Paulo, BrazilUniv São Paulo, Sch Med, Dept Gastroenterol, São Paulo Inst Trop Med, São Paulo, BrazilSao Jose do Rio Preto Sch Med, Dept Hepatol, São Paulo, BrazilUniversidade Federal de São Paulo, Div Gastroenterol, Lab Appl Mol Hepatol, Hepatitis Sect, São Paulo, BrazilFAPESP: 07/52073-0FAPESP: 06/60012-9Web of Scienc

Avaliação das perdas de manga (Mangifera indica L.) no mercado varejista da cidade de Botucatu-SP Mango losses estimate in retail market

O elevado percentual de perdas na comercialização de manga no Brasil faz com que apenas parcela da produção chegue à mesa do consumidor. O presente trabalho determinou, em equipamentos de varejo da cidade de Botucatu - SP, as perdas de manga, suas causas e emitir sugestões para a redução das mesmas. Foram selecionados 22 equipamentos entre supermercados, quitanda/sacolões e feiras livres. O volume estimado de manga comercializada neste município foi 114 t/ano. Verificaram-se as seguintes perdas médias por variedade de manga: 11,5% para 'Tommy Atkins', 12,4% para 'Haden' e 12,7% para as outras variedades. O valor total anual destas perdas no comércio varejista da cidade, em 2007, atingiu R$49.200,00 (US$ 25.231,00), correspondente a 14 toneladas. Os percentuais médios de perda mostram grande semelhança quando comparados a estudos realizados em outras localidades. Os resultados obtidos apontam para a necessidade de melhor gestão de estoques, de exposição da fruta para o consumidor e uso de tecnologia no transporte e armazenagem para a manutenção da qualidade e redução das perdas. Conclui-se também pela necessidade de maiores investimentos em capacitação técnica dos encarregados do setor de frutas e hortaliças.<br>Losses in the mango commercialization process in Brazil has reduced its offer to the consumer. The present study aims at determining these losses in different purchase sites of the retail market, its causes and suggestions for reducing them. Twenty two retail points, including supermarkets, greengroceries and free fair were selected in Botucatu, state of São Paulo, Brazil. The total amount commercialized was 114 ton/year. The following average losses were verified for each mango variety: 'Tommy Atkins' (11, 5%), Haden (12, 4%) and 12, 7% for other varieties. The total loss in retail market reached US$ 25.231, 00 corresponding to 14 tons. The average loss percentage observed is compatible with previous studies running in other cities. The results suggest the need of better management, the exposure of the fruit to the consumer, technology in the transportation of the fruits and most appropriate storage for maintaining the quality and the reduction of losses. The results show the need of higher investment in technical personnel reskilling in fruit and vegetable sector

Salivary Hemoglobin Protects against Erosive Tooth Wear in Gastric Reflux Patients.

OBJECTIVE Saliva is the most important biological factor to protect against erosive tooth wear (ETW). Gastroesophageal reflux disease (GERD) patients have an increased risk of ETW due to the frequent presence of intrinsic acids in the oral cavity. Remarkably, not all GERD patients suffer from ETW, which might be due to differences in the composition of the saliva. METHODS This study compared the proteomic profile of saliva in patients (1) with GERD and ETW (basic erosive wear examination, BEWE, score ≥9; GE group) and (2) with GERD without ETW (BEWE = 0; GNE group) using shotgun label-free quantitative proteomic analysis nLC-ESI-MS/MS. The ability of hemoglobin (Hb) to protect against initial enamel erosion caused by a daily 10-s immersion of enamel specimens in 0.01 M HCl (pH 2.3) for 3 days was evaluated in vitro for proof of concept. Surface hardness change was used as response variable. RESULTS The differential expression of Hb subunits was significantly increased in the GNE group versus the GE group, in particular the Hb α-subunit that showed a >22-fold increase. Expressions of serum albumin (4.5-fold) and isoforms of cytoskeletal keratin type II (>3-fold) were also increased in the GNE group. Proteinase inhibitors, such as α1-antitrypsin and α2-macroglobulin, were only identified in the GNE group. In vitro, Hb (1.0 and 4.0 mg/mL) significantly reduced initial enamel erosion compared to a negative control after 3 days. CONCLUSIONS Our results indicate that many proteins, with special emphasis on Hb, may be involved in the resistance of GERD patients to the occurrence of ETW. These proteins may be candidates for inclusion in dental products to protect against ETW

Produtividade do trabalho, salários reais e desemprego na indústria de transformação do Brasil na década de 1990: teoria e evidência Labor productivity, real wages and unemployment in the Brazilian manufacturing in 90's: theory and evidence

Este artigo investiga se os ganhos de produtividade do trabalho verificados na indústria de transformação brasileira nos anos 90 tiveram algum impacto sobre o comportamento dos salários reais. Para isso, utiliza o modelo de Ball e Moffit (2001), que incorpora a produtividade do trabalho à explicação da variação dos salários reais. A década de 1990 foi dividida em dois períodos para fins de análise: janeiro de 1990 a junho de 1994, e julho de 1994 a dezembro de 2000. Os resultados apontarão que a produtividade do trabalho foi uma variável significativa na explicação dos salários reais antes do Plano Real.<br>This paper investigates if the gains of labor productivity verificated in the Brazilian industry in the nineties had some impact on the behavior of real wages. For this uses the Ball and Moffit's (2001) model, wich incorporates the labor productivity in a explanation of the real wages variation. The nineties were divided in two periods for analysis: January 1990 to June 1994 and July to December 2000. The results will point out that the labor productivity was a significative variable in the explanation of wages before the Real Plan