Minimum Information about a Biosynthetic Gene cluster

A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard.Chemistry and Chemical Biolog

Identification of genetic variants associated with Huntington's disease progression: a genome-wide association study

Background Huntington's disease is caused by a CAG repeat expansion in the huntingtin gene, HTT. Age at onset has been used as a quantitative phenotype in genetic analysis looking for Huntington's disease modifiers, but is hard to define and not always available. Therefore, we aimed to generate a novel measure of disease progression and to identify genetic markers associated with this progression measure. Methods We generated a progression score on the basis of principal component analysis of prospectively acquired longitudinal changes in motor, cognitive, and imaging measures in the 218 indivduals in the TRACK-HD cohort of Huntington's disease gene mutation carriers (data collected 2008–11). We generated a parallel progression score using data from 1773 previously genotyped participants from the European Huntington's Disease Network REGISTRY study of Huntington's disease mutation carriers (data collected 2003–13). We did a genome-wide association analyses in terms of progression for 216 TRACK-HD participants and 1773 REGISTRY participants, then a meta-analysis of these results was undertaken. Findings Longitudinal motor, cognitive, and imaging scores were correlated with each other in TRACK-HD participants, justifying use of a single, cross-domain measure of disease progression in both studies. The TRACK-HD and REGISTRY progression measures were correlated with each other (r=0·674), and with age at onset (TRACK-HD, r=0·315; REGISTRY, r=0·234). The meta-analysis of progression in TRACK-HD and REGISTRY gave a genome-wide significant signal (p=1·12 × 10−10) on chromosome 5 spanning three genes: MSH3, DHFR, and MTRNR2L2. The genes in this locus were associated with progression in TRACK-HD (MSH3 p=2·94 × 10−8 DHFR p=8·37 × 10−7 MTRNR2L2 p=2·15 × 10−9) and to a lesser extent in REGISTRY (MSH3 p=9·36 × 10−4 DHFR p=8·45 × 10−4 MTRNR2L2 p=1·20 × 10−3). The lead single nucleotide polymorphism (SNP) in TRACK-HD (rs557874766) was genome-wide significant in the meta-analysis (p=1·58 × 10−8), and encodes an aminoacid change (Pro67Ala) in MSH3. In TRACK-HD, each copy of the minor allele at this SNP was associated with a 0·4 units per year (95% CI 0·16–0·66) reduction in the rate of change of the Unified Huntington's Disease Rating Scale (UHDRS) Total Motor Score, and a reduction of 0·12 units per year (95% CI 0·06–0·18) in the rate of change of UHDRS Total Functional Capacity score. These associations remained significant after adjusting for age of onset. Interpretation The multidomain progression measure in TRACK-HD was associated with a functional variant that was genome-wide significant in our meta-analysis. The association in only 216 participants implies that the progression measure is a sensitive reflection of disease burden, that the effect size at this locus is large, or both. Knockout of Msh3 reduces somatic expansion in Huntington's disease mouse models, suggesting this mechanism as an area for future therapeutic investigation

The EUSO@TurLab project in view of Mini-EUSO and EUSO-SPB2 missions

International audienceThe TurLab facility is a laboratory, equipped with a 5 m diameter and 1 m depth rotating tank, located in the fourth basement level of the Physics Department of the University of Turin. In the past years, we have used the facility to perform experiments related to the observations of Extreme Energy Cosmic Rays (EECRs) from space using the fluorescence technique for JEM-EUSO missions with the main objective to test the response of the trigger logic. In the missions, the diffuse night brightness and artificial and natural light sources can vary significantly in time and space in the Field of View (FoV) of the telescope. Therefore, it is essential to verify the detector performance and test the trigger logic under such an environment. By means of the tank rotation, a various terrestrial surface with the different optical characteristics such as ocean, land, forest, desert and clouds, as well as artificial and natural light sources such as city lights, lightnings and meteors passing by the detector FoV one after the other is reproduced. The fact that the tank is located in a very dark place enables the tests under an optically controlled environment. Using the Mini-EUSO data taken since 2019 onboard the ISS, we will report on the comparison between TurLab and ISS measurements in view of future experiments at TurLab. Moreover, in the forthcoming months we will start testing the trigger logic of the EUSO-SPB2 mission. We report also on the plans and status for this purpose

Varying TiO2 Macroscopic Fiber Morphologies toward Tuning Their Photocatalytic Properties

In a context of volatile organic compound photodecomposition, we haveaddressed TiO2-based macroscoscpic fiber generation. We have extruded hybrid sols ofamorphous titania nanoparticles, latex nanoparticles, and nonionic surfactant (Tergitol) as structure-directing agents into a poly(vinyl alcohol) (PVA) solution bearing salts acting as a flocculating medium. The resulting nanocomposite TiO2/latex/PVA macroscopic fibers were thermally treated in air to open porosity by organic removal while generating the photocatalytically active anatase phase of TiO2 along with residual brookite. Considering the synthetic paths, we have varied both the diameter of the latex particles as well as their concentration within the starting sol. These parameters allow tuning both the voids created through the applied thermal treatment and the fiber final diameters. For gas-phase photocatalysis, we have shown that the fiber diameters, mesoscopic roughness, and macroscopic topological defects represent indeed important orphological parameters acting cooperatively toward both acetone degradation and its mineralization processes. Particularly, triggering the fiber morphological characteristics, we have increased their efficiency toward acetone degradation of around 550% when compared with previous work

Damping signatures at JUNO, a medium-baseline reactor neutrino oscillation experiment

Abstract We study damping signatures at the Jiangmen Underground Neutrino Observatory (JUNO), a medium-baseline reactor neutrino oscillation experiment. These damping signatures are motivated by various new physics models, including quantum decoherence, nu(3) decay, neutrino absorption, and wave packet decoherence. The phenomenological effects of these models can be characterized by exponential damping factors at the probability level. We assess how well JUNO can constrain these damping parameters and how to disentangle these different damping signatures at JUNO. Compared to current experimental limits, JUNO can significantly improve the limits on tau(3)/m(3) in the nu(3) decay model, the width of the neutrino wave packet sigma(x), and the intrinsic relative dispersion of neutrino momentum sigma(rel)

Minimum Information about a Biosynthetic Gene cluster

© 2015 Nature America, Inc. All rights reserved. A wide variety of enzymatic pathways that produce specialized metabolites in bacteria, fungi and plants are known to be encoded in biosynthetic gene clusters. Information about these clusters, pathways and metabolites is currently dispersed throughout the literature, making it difficult to exploit. To facilitate consistent and systematic deposition and retrieval of data on biosynthetic gene clusters, we propose the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard