143 research outputs found
Draft Genome Sequence of Salegentibacter sp. Strain BDJ18, a Plankton-Associated Bacterium in the Northeast Atlantic Ocean
Salegentibacter sp. strain BDJ18 was isolated from a plankton-associated seawater sample from the northeast Atlantic Ocean. We report its draft genome assembly, which includes genes potentially important for microbial interactions in the marine environment
A Decade of Time Series Sampling Reveals Thermal Variation and Shifts in Pseudo-nitzschia Species Composition That Contribute to Harmful Algal Blooms in an Eastern US Estuary
In 2016-17, shellfish harvesting closed for the first time in Narragansett Bay, Rhode Island, USA, from domoic acid (DA), a neurotoxin produced by diatoms of the Pseudo-nitzschiagenus. Pseudo-nitzschia have occurred frequently for over 60 years in Narragansett Bay’s Long-Term Plankton Time Series (NBPTS), therefore it is surprising that the first closure only recently occurred. Pseudo-nitzschia species are known to vary in their toxin production, thus species identification is critical for understanding the underlying ecological causes of these harmful algal blooms (HABs). DNA in plankton biomass can be preserved for many years, so molecular barcoding of archived samples is useful for delineation of taxa over time. This study used amplification of the Pseudo-nitzschia-specific 18S-5.8S rDNA internal transcribed spacer region 1 (ITS1) in plankton samples and high throughput sequencing to characterize Pseudo-nitzschia species composition over a decade in Narragansett Bay, including eight years before the 2016-17 closures and two years following. This metabarcoding method can discriminate nearly all known Pseudo-nitzschia species. Several species recur as year-round residents in Narragansett Bay (P. pungens var. pungens, P. americana, P. multiseries, and P. calliantha). Various other species increased in frequency after 2015, and some appeared for the first time during the closure period. Notably, P. australis, a species prevalent in US West Coast HABs and known for high DA production, was not observed in Narragansett Bay until the 2017 closure but has been present in several years after the closures. Annual differences in Pseudo-nitzschia composition were correlated with physical and chemical conditions, predominantly water temperature. The long-term composition trends of Pseudo-nitzschia in Narragansett Bay serve as a baseline for identifying the introduction of new species, understanding shifting assemblages that contributed to the 2016-17 closures, and monitoring species that may be cause for future concern
Isolation of Isotrichophycin C and Trichophycins G–I from a Collection of Trichodesmium thiebautii
The trichophycin family of compounds are chlorinated polyketides first discovered from environmental collections of a bloom-forming Trichodesmium sp. cyanobacterium. In an effort to fully capture the chemical space of this group of metabolites, the utilization of MS/MS-based molecular networking of a Trichodesmium thiebautii extract revealed a metabolome replete with halogenated compounds. Subsequent MS-guided isolation resulted in the characterization of isotrichophycin C and trichophycins G–I (1–4). These new metabolites had intriguing structural variations from those trichophycins previously characterized, which allowed for a comparative study to examine structural features that are associated with toxicity to murine neuroblastoma cells. Additionally, we propose the absolute configuration of the previously characterized trichophycin A (5). Overall, the metabolome of the Trichodesmium bloom is hallmarked by an unprecedented amount of chlorinated molecules, many of which remain to be structurally characterized
The SL2S Galaxy-scale Lens Sample. II. Cosmic evolution of dark and luminous mass in early-type galaxies
We present a joint gravitational lensing and stellar-dynamical analysis of 11
early-type galaxies (median deflector redshift \zd=0.5) from Strong Lenses in
the Legacy Survey (SL2S). Using newly measured redshifts and stellar velocity
dispersions from Keck spectroscopy with lens models from Paper I, we derive the
total mass density slope inside the Einstein radius for each of the 11 lenses.
The average total density slope is found to be (), with an intrinsic
scatter of . We also determine the dark matter fraction
for each lens within half the effective radius, and find the average projected
dark matter mass fraction to be with a scatter of
for a Salpeter IMF. By combining the SL2S results with
those from the Sloan Lens ACS Survey (median \zd=0.2) and the Lenses
Structure and Dynamics survey (median \zd=0.8), we investigate cosmic
evolution of and find a mild trend \partial/\partial\zd =
-0.25^{+0.10}_{-0.12}. This suggests that the total density profile of massive
galaxies has become slightly steeper over cosmic time. If this result is
confirmed by larger samples, it would indicate that dissipative processes
played some role in the growth of massive galaxies since .Comment: 21 pages, 16 figures, submitted to Ap
Screening the PRISM Library against Staphylococcus aureus Reveals a Sesquiterpene Lactone from Liriodendron tulipifera with Inhibitory Activity
Infections caused by the bacterium Staphylococcus aureus continue to pose threats to human health and put a financial burden on the healthcare system. The overuse of antibiotics has contributed to mutations leading to the emergence of methicillin-resistant S. aureus, and there is a critical need for the discovery and development of new antibiotics to evade drug-resistant bacteria. Medicinal plants have shown promise as sources of new small-molecule therapeutics with potential uses against pathogenic infections. The principal Rhode Island secondary metabolite (PRISM) library is a botanical extract library generated from specimens in the URI Youngken Medicinal Garden by upper-division undergraduate students. PRISM extracts were screened for activity against strains of methicillin-susceptible S. aureus (MSSA). An extract generated from the tulip tree (Liriodendron tulipifera) demonstrated growth inhibition against MSSA, and a bioassay-guided approach identified a sesquiterpene lactone, laurenobiolide, as the active constituent. Intriguingly, its isomers, tulipinolide and epi-tulipinolide, lacked potent activity against MSSA. Laurenobiolide also proved to be more potent against MSSA than the structurally similar sesquiterpene lactones, costunolide and dehydrocostus lactone. Laurenobiolide was the most abundant in the twig bark of the tulip tree, supporting the twig bark’s historical and cultural usage in poultices and teas
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Synergism of anisotropic and computational NMR methods reveals the likely configuration of phormidolide A.
Characterization of the complex molecular scaffold of the marine polyketide natural product phormidolide A represents a challenge that has persisted for nearly two decades. In light of discordant results arising from recent synthetic and biosynthetic reports, a rigorous study of the configuration of phormidolide A was necessary. This report outlines a synergistic effort employing computational and anisotropic NMR investigation, that provided orthogonal confirmation of the reassigned side chain, as well as supporting a further correction of the C7 stereocenter
Galaxy Groups: Proceedings from a Swinburne University Workshop
We present the proceedings from a 2-day workshop held at Swinburne University
on the 24th-25th of May 2005. The workshop participants highlighted current
Australian research on both theoretical and observational aspects of galaxy
groups. These proceedings include short 1-page summaries of a number of the
talks presented at the workshop. The talks presented ranged from reconciling
N-body simulations with observations, to the HI content of galaxies in groups
and the existence of ``dark galaxies''. The formation and existence of
ultra-compact dwarfs in groups, and a new supergroup in Eridanus were also
discussed.Comment: to be published in PAS
The WiggleZ Dark Energy Survey: Survey Design and First Data Release
The WiggleZ Dark Energy Survey is a survey of 240,000 emission line galaxies
in the distant universe, measured with the AAOmega spectrograph on the 3.9-m
Anglo-Australian Telescope (AAT). The target galaxies are selected using
ultraviolet photometry from the GALEX satellite, with a flux limit of NUV<22.8
mag. The redshift range containing 90% of the galaxies is 0.2<z<1.0. The
primary aim of the survey is to precisely measure the scale of baryon acoustic
oscillations (BAO) imprinted on the spatial distribution of these galaxies at
look-back times of 4-8 Gyrs. Detailed forecasts indicate the survey will
measure the BAO scale to better than 2% and the tangential and radial acoustic
wave scales to approximately 3% and 5%, respectively.
This paper provides a detailed description of the survey and its design, as
well as the spectroscopic observations, data reduction, and redshift
measurement techniques employed. It also presents an analysis of the properties
of the target galaxies, including emission line diagnostics which show that
they are mostly extreme starburst galaxies, and Hubble Space Telescope images,
which show they contain a high fraction of interacting or distorted systems. In
conjunction with this paper, we make a public data release of data for the
first 100,000 galaxies measured for the project.Comment: Accepted by MNRAS; this has some figures in low resolution format.
Full resolution PDF version (7MB) available at
http://www.physics.uq.edu.au/people/mjd/pub/wigglez1.pdf The WiggleZ home
page is at http://wigglez.swin.edu.au
Bayesian analysis of weak gravitational lensing and Sunyaev-Zel'dovich data for six galaxy clusters
We present an analysis of observations made with the Arcminute Microkelvin
Imager (AMI) and the Canada-France-Hawaii Telescope (CFHT) of six galaxy
clusters in a redshift range of 0.16--0.41. The cluster gas is modelled using
the Sunyaev--Zel'dovich (SZ) data provided by AMI, while the total mass is
modelled using the lensing data from the CFHT. In this paper, we: i) find very
good agreement between SZ measurements (assuming large-scale virialisation and
a gas-fraction prior) and lensing measurements of the total cluster masses out
to r_200; ii) perform the first multiple-component weak-lensing analysis of
A115; iii) confirm the unusual separation between the gas and mass components
in A1914; iv) jointly analyse the SZ and lensing data for the relaxed cluster
A611, confirming our use of a simulation-derived mass-temperature relation for
parameterizing measurements of the SZ effect.Comment: 22 pages, 12 figures, 12 tables, published by MNRA
The Atacama Cosmology Telescope: Physical Properties and Purity of a Galaxy Cluster Sample Selected via the Sunyaev-Zel'dovich Effect
We present optical and X-ray properties for the first confirmed galaxy
cluster sample selected by the Sunyaev-Zel'dovich Effect from 148 GHz maps over
455 square degrees of sky made with the Atacama Cosmology Telescope. These
maps, coupled with multi-band imaging on 4-meter-class optical telescopes, have
yielded a sample of 23 galaxy clusters with redshifts between 0.118 and 1.066.
Of these 23 clusters, 10 are newly discovered. The selection of this sample is
approximately mass limited and essentially independent of redshift. We provide
optical positions, images, redshifts and X-ray fluxes and luminosities for the
full sample, and X-ray temperatures of an important subset. The mass limit of
the full sample is around 8e14 Msun, with a number distribution that peaks
around a redshift of 0.4. For the 10 highest significance SZE-selected cluster
candidates, all of which are optically confirmed, the mass threshold is 1e15
Msun and the redshift range is 0.167 to 1.066. Archival observations from
Chandra, XMM-Newton, and ROSAT provide X-ray luminosities and temperatures that
are broadly consistent with this mass threshold. Our optical follow-up
procedure also allowed us to assess the purity of the ACT cluster sample.
Eighty (one hundred) percent of the 148 GHz candidates with signal-to-noise
ratios greater than 5.1 (5.7) are confirmed as massive clusters. The reported
sample represents one of the largest SZE-selected sample of massive clusters
over all redshifts within a cosmologically-significant survey volume, which
will enable cosmological studies as well as future studies on the evolution,
morphology, and stellar populations in the most massive clusters in the
Universe.Comment: 20 pages, 15 figures, 6 tables. Accepted for publication in ApJ.
Higher resolution figures available at:
http://peumo.rutgers.edu/~felipe/e-prints
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