Hierarchical habitat-use by an endangered steppe bird in fragmented landscapes is associated with large connected patches and high food availability

Multidimensional approaches must be employed when addressing habitat use patterns. In this study, we aim to elucidate the hierarchical nature of space use by species inhabiting fragmented landscapes, using the threatened Dupont’s lark (Chersophilus duponti). The intensity of space use by Dupont’s lark was estimated using the Kernel Density Function on territory locations in 2015. We measured descriptors of habitat quality at metapopulation (connectivity and patch size), landscape (land-use types and anthropogenic disturbance) and microhabitat-scale (plant structure and composition, herbivore abundance and food availability) at 37 sampling stations. We fitted a Partial Least Squares Regression (PLSR) which yielded two components, accounting for 81% of total variance. Metapopulation-scale factors had the greatest explanatory power (32%), followed by microhabitat (17%) landscape (10%) and spatial predictors (3.6%). Connectivity and patch size were key factors explaining habitat use, and wind farms had a negative effect. At microhabitat-scale, space use was positively associated with Coleoptera, Orthoptera, Araneae and Diptera biomass, but negatively with Formicidae and Blattodea biomass, the cover of Stipa spp, Koeleria vallesiana and moss. This research highlights the hierarchical nature of habitat use in fragmented landscapes. Therefore, conservation measures should ensure connectivity, guarantee a minimum patch size, and improve habitat quality within patchesWe wish to thank Luis M. Carrascal for the help with statistical analysis. In addition, we are grateful to Álvaro Ortega, Jonathan Pereira and Carlos Talabante for their help with arthropods identification, and to Iris Calleja, Rodrigo A. Martínez, Laura Aylagas and Jaqueline Boldt for their help during fieldwork. We are grateful to two anonymous reviewers for their constructive comments that helped to improve the manuscript. This study was supported by Fundación Patrimonio Natural de Castilla y León, the European Commission (Life-Ricotí project LIFE15-NAT-ES-000802) and the BBVA Foundation (BBVA-Dron Ricotí project). This paper contributes to project REMEDINAL-3 from CAM

Dietary niche overlap and resource partitioning among six steppe passerines of Central Spain using DNA metabarcoding

Trophic niche partitioning is a mechanism that facilitates the coexistence of ecologically similar species by sharing their resource use. However, detailed information of the trophic niche in insectivorous birds is usually limited by the lack of accurate identification of consumed food resources. The use of DNA metabarcoding has proved useful for molecular identification of the taxa present in bird faecal samples. Here, we used this molecular technique to study the diets of six steppe passerine species distributed in two Special Protection Areas in central Spain, and to characterize the dietary niche overlap and the prey composition differences between bird species. In total, we distinguished 112 diet items, covering 39 arthropod families of 13 orders. Although significant dietary differences existed in prey species composition, our results indicated a 74% overlap in steppe bird dietary niche, mostly due to high consumption of abundant arthropod prey such as beetles, grasshoppers and spiders in the breeding season by all bird species. The lowest overlap was found for the dietary niches of the Greater Short-toed Lark Calandrella brachydactyla and Dupont's Lark Chersophilus duponti, a scarce and threatened species, which appeared to be the species with the most distinct dietary niche within the community. Our results make a significant contribution to the knowledge of shrub-steppe bird diets and their trophic interactions, indicating that some extent of interspecific resource partitioning occurs in the study area, notably between Dupont's Lark and the Greater Short-toed Lark. Our study demonstrates the value of DNA metabarcoding in the assessment of passerine diets and provides useful ecological results for the design of biodiversity conservation programmes in the increasingly scarce and threatened steppe habitatsThis study was supported by the European Commission LIFE Ricot ı (LIFE15-NAT-ES-000802) and LIFE Connect Ricot ı (LIFE20-NAT-ES-000133) projects, and the BBVA Foundation Dron Ricot ı project. This is a contribution to the Excellence Network Remedinal 3CM (S2013/MAE2719). Lu ıs P. da Silva and Vanessa A. Mata were funded by Fundac ~ao para a Ci^encia e Tecnologia (FCT) through the research contract CEECIND/02064/ 2017 and 2020.02547.CEECIND, respectivel

MicroRNA-145 and microRNA-486 are potential serum biomarkers for vascular calcification

INTRODUCTION: MicroRNAs (miRs) regulate vascular calcification (VC), and their quantification may contribute to suspicion of the presence of VC. METHODS: The study was performed in four phases. Phase 1: miRs sequencing of rat calcified and non-calcified aortas. Phase 2: miRs with the highest rate of change, plus miR-145 [the most abundant miR in vascular smooth muscle cells (VSMCs)], were validated in aortas and serum from rats with and without VC. Phase 3: the selected miRs were analyzed in epigastric arteries from kidney donors and recipients, and serum samples from general population. Phase 4: VSMCs were exposed to different phosphorus concentrations, and miR-145 and miR-486 were overexpressed to investigate their role in VC. RESULTS: miR-145, miR-122-5p, miR-486 and miR-598-3p decreased in the rat calcified aortas, but only miR-145 and miR-486 were detected in serum. In human epigastric arteries, miR-145 and miR-486 were lower in kidney transplant recipients compared with donors. Both miRs inversely correlated with arterial calcium content and with VC (Kauppila index). In the general population, the severe VC was associated with the lowest serum levels of both miRs. The receiver operating characteristic curve showed that serum miR-145 was a good biomarker of VC. In VSMCs exposed to high phosphorus, calcium content, osteogenic markers (Runx2 and Osterix) increased, and the contractile marker (α-actin), miR-145 and miR-486 decreased. Overexpression of miR-145, and to a lesser extent miR-486, prevented the increase in calcium content induced by high phosphorus, the osteogenic differentiation and the loss of the contractile phenotype. CONCLUSION: miR-145 and miR-486 regulate the osteogenic differentiation of VSMCs, and their quantification in serum could serve as a marker of VC

Role of Klotho and AGE/RAGE-Wnt/β-catenin signalling pathway on the development of cardiac and renal fibrosis in diabetes

Fibrosis plays an important role in the pathogenesis of long-term diabetic complications and contributes to the development of cardiac and renal dysfunction. The aim of this experimental study, performed in a long-term rat model, which resembles type 1 diabetes mellitus, was to investigate the role of soluble Klotho (sKlotho), advanced glycation end products (AGEs)/receptor for AGEs (RAGE), fibrotic Wnt/β-catenin pathway, and pro-fibrotic pathways in kidney and heart. Diabetes was induced by streptozotocin. Glycaemia was maintained by insulin administration for 24 weeks. Serum and urine sKlotho, AGEs, soluble RAGE (sRAGE) and biochemical markers were studied. The levels of Klotho, RAGEs, ADAM10, markers of fibrosis (collagen deposition, fibronectin, TGF-β1, and Wnt/β-catenin pathway), hypertrophy of the kidney and/or heart were analysed. At the end of study, diabetic rats showed higher levels of urinary sKlotho, AGEs and sRAGE and lower serum sKlotho compared with controls without differences in the renal Klotho expression. A significant positive correlation was found between urinary sKlotho and AGEs and urinary albumin/creatinine ratio (uACR). Fibrosis and RAGE levels were significantly higher in the heart without differences in the kidney of diabetic rats compared to controls. The results also suggest the increase in sKlotho and sRAGE excretion may be due to polyuria in the diabetic rats

Skeletal muscle specific genes networks in cattle

While physiological differences across skeletal muscles have been described, the differential gene expression underlying them and the discovery of how they interact to perform specific biological processes are largely to be elucidated. The purpose of the present study was, firstly, to profile by cDNA microarrays the differential gene expression between two skeletal muscle types, Psoas major (PM) and Flexor digitorum (FD), in beef cattle and then to interpret the results in the context of a bovine gene coexpression network, detecting possible changes in connectivity across the skeletal muscle system. Eighty four genes were differentially expressed (DE) between muscles. Approximately 54% encoded metabolic enzymes and structural-contractile proteins. DE genes were involved in similar processes and functions, but the proportion of genes in each category varied within each muscle. A correlation matrix was obtained for 61 out of the 84 DE genes from a gene coexpression network. Different groups of coexpression were observed, the largest one having 28 metabolic and contractile genes, up-regulated in PM, and mainly encoding fast-glycolytic fibre structural components and glycolytic enzymes. In FD, genes related to cell support seemed to constitute its identity feature and did not positively correlate to the rest of DE genes in FD. Moreover, changes in connectivity for some DE genes were observed in the different gene ontologies. Our results confirm the existence of a muscle dependent transcription and coexpression pattern and suggest the necessity of integrating different muscle types to perform comprehensive networks for the transcriptional landscape of bovine skeletal muscle

Strategies for GHG mitigation in Mediterranean cropping systems. A review

In this review we aimed to synthetize and analyze the most promising GHGs mitigation strategies for Mediterranean cropping systems. A description of most relevant measures, based on the best crop choice and management by farmers (i.e., agronomical practices), was firstly carried out. Many of these measures can be also efficient in other climatic regions, but here we provide particular results and discussion of their efficiencies for Mediterranean cropping systems. An integrated assessment of management practices on mitigating each component of the global warming potential (N2O and CH4 emissions and C sequestration) of production systems considering potential side-effects of their implementation allowed us to propose the best strategies to abate GHG emissions, while sustaining crop yields and mitigating other sources of environmental pollution (e.g. nitrate leaching and ammonia volatilization)

The Fourteenth Data Release of the Sloan Digital Sky Survey: First Spectroscopic Data from the extended Baryon Oscillation Spectroscopic Survey and from the second phase of the Apache Point Observatory Galactic Evolution Experiment

The fourth generation of the Sloan Digital Sky Survey (SDSS-IV) has been in operation since July 2014. This paper describes the second data release from this phase, and the fourteenth from SDSS overall (making this, Data Release Fourteen or DR14). This release makes public data taken by SDSS-IV in its first two years of operation (July 2014-2016). Like all previous SDSS releases, DR14 is cumulative, including the most recent reductions and calibrations of all data taken by SDSS since the first phase began operations in 2000. New in DR14 is the first public release of data from the extended Baryon Oscillation Spectroscopic Survey (eBOSS); the first data from the second phase of the Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE-2), including stellar parameter estimates from an innovative data driven machine learning algorithm known as "The Cannon"; and almost twice as many data cubes from the Mapping Nearby Galaxies at APO (MaNGA) survey as were in the previous release (N = 2812 in total). This paper describes the location and format of the publicly available data from SDSS-IV surveys. We provide references to the important technical papers describing how these data have been taken (both targeting and observation details) and processed for scientific use. The SDSS website (www.sdss.org) has been updated for this release, and provides links to data downloads, as well as tutorials and examples of data use. SDSS-IV is planning to continue to collect astronomical data until 2020, and will be followed by SDSS-V.Comment: SDSS-IV collaboration alphabetical author data release paper. DR14 happened on 31st July 2017. 19 pages, 5 figures. Accepted by ApJS on 28th Nov 2017 (this is the "post-print" and "post-proofs" version; minor corrections only from v1, and most of errors found in proofs corrected

Metabolic Adaptation in Transplastomic Plants Massively Accumulating Recombinant Proteins

BACKGROUND: Recombinant chloroplasts are endowed with an astonishing capacity to accumulate foreign proteins. However, knowledge about the impact on resident proteins of such high levels of recombinant protein accumulation is lacking. METHODOLOGY/PRINCIPAL FINDINGS: Here we used proteomics to characterize tobacco (Nicotiana tabacum) plastid transformants massively accumulating a p-hydroxyphenyl pyruvate dioxygenase (HPPD) or a green fluorescent protein (GFP). While under the conditions used no obvious modifications in plant phenotype could be observed, these proteins accumulated to even higher levels than ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco), the most abundant protein on the planet. This accumulation occurred at the expense of a limited number of leaf proteins including Rubisco. In particular, enzymes involved in CO(2) metabolism such as nuclear-encoded plastidial Calvin cycle enzymes and mitochondrial glycine decarboxylase were found to adjust their accumulation level to these novel physiological conditions. CONCLUSIONS/SIGNIFICANCE: The results document how protein synthetic capacity is limited in plant cells. They may provide new avenues to evaluate possible bottlenecks in recombinant protein technology and to maintain plant fitness in future studies aiming at producing recombinant proteins of interest through chloroplast transformation