Rapport sur le suivi morphosédimentaire du sillon de Talbert pour l'année 2015

La présente étude s’inscrit dans la continuité du suivi topo‐morphologique du Sillon de Talbert initié en 2003 à la demande de la commune de Pleubian et du Conservatoire du Littoral. L’objectif est d’analyser les modalités d’évolution de la flèche depuis l’enlèvement de l’enrochement en 2004 (Stéphan et al., 2007, 2008, 2009, 2011, 2012, 2015 ; Fichaut et al., 2010, 2013). Dans le cadre de ce rapport, nous présentons les principaux changements morphologiques survenus entre les levés topographiques effectués aux mois de septembre 2014 et septembre 2015 à l’échelledu Sillon. La méthode que nous avons employée pour reconstituer la topographie de l’estran respecte en partie le protocole de mesure détaillé dans nos précédents rapports. Elle s’appuie sur l’acquisition de mesures topographiques au DGPS (type TopCon HiperV) à partir d’une station fixe installée sur la borne IGN située sur le sémaphore de Créac’h Maout, dont les coordonnées géodésiques sont accessibles sur le site de l’IGN (www.ign.fr/ rubrique Géodésie). Toutefois, il faut noter que quelques changements ont été introduit cette année et nécessite de faire un nouveau point méthodologique. Il faut noter que le levé de 2015 fait suite aux grosses tempêtes de l’hiver 2013‐ 2014. Ce dernier a été l’un des plus tempétueux qu’a connu la Bretagne au cours des deux dernières décennies. Entre les mois d’octobre 2013 et de mars 2014, une douzaine de tempêtes majeures se sont succédé sur les côtes françaises de l’Atlantique et de la Manche, associant des vents violents, de fortes pluviométries et de fortes houles océaniques (Blaise et al., 2015). Ce contexte, particulièrement propice au mouvement des sédiments sur le littoral, a entraîné un démaigrissement de nombreuses plages de Bretagne. La forte fréquence de ces événements durant l’hiver a abouti, à plusieurs reprises, à la conjonction d’une mer très agitée et d’une marée de vive‐eau. Durant les pleines mers, l’action des vagues a été portée dans les parties hautes de l’estran, rarement atteintes par la mer. Conjuguée à des coefficients de marée importants et des surcotes significatives, la forte agitation marine a généré des niveaux d’eau instantanés très élevés. Les vagues ont donc franchi de nombreux cordons de galets. Compte tenu de son exposition aux houles, le Sillon de Talbert a été frappé de plein fouet par ces phénomènes. Toutefois, la comparaison des levés réalisés entre mars 2014 et septembre 2014 a montré que le cordon était en cours de régénération post‐tempête, liée aux conditions météo‐océaniques plus calmes qui ont agi durant cette période (Stéphan et al., 2015). Il s'agissait donc de voir si le levé de l'année 2015 confirmait ou pas cette tendance à la régénération du sillon de Talbert

Laccases to take on the challenge of emerging organic contaminants in wastewater

The removal of emerging organic contaminants from municipal wastewater poses a major challenge unsatisfactorily addressed by present wastewater treatment processes. Enzyme-catalyzed transformation of emerging organic contaminants (EOC) has been proposed as a possible solution to this major environmental issue more than a decade ago. Especially, laccases gained interest in this context in recent years due to their broad substrate range and since they only need molecular oxygen as a cosubstrate. In order to ensure the stability of the enzymes and allow their retention and reuse, either immobilization or insolubilization of the biocatalysts seems to be the prerequisite for continuous wastewater treatment applications. The present review summarizes the research conducted on EOC transformation with laccases and presents an overview of the possible immobilization techniques. The goal is to assess the state of the art and identify the next necessary steps that have to be undertaken in order to implement laccases as a tertiary wastewater treatment process in sewage treatment plants

Immobilization of defined laccase combinations for enhanced oxidation of phenolic contaminants

Immobilization is an important method to increase enzyme stability and allow enzyme reuse. One interesting application in the field of environmental biotechnology is the immobilization of laccase to eliminate phenolic contaminants via oxidation. Fumed silica nanoparticles have interesting potential as support material for laccase immobilization via sorption-assisted immobilization in the perspective of applications such as the elimination of micropollutants in aqueous phases. Based on these facts, the present work aimed to formulate laccase-nanoparticle conjugates with defined laccase combinations in order to obtain nanobiocatalysts, which are active over a broad range of pH values and possess a large substrate spectrum to suitably address pollution by multiple contaminants. A multi-enzymatic approach was investigated by immobilizing five different types of laccases originating from a Thielavia genus, Coriolopsis polyzona, Cerrena unicolor, Pleurotus ostreatus, and Trametes versicolor onto fumed silica nanoparticles, separately and in combinations. The laccases differed concerning their pH optima and substrate affinity. Exploiting their differences allowed the formulation of tailor-made nanobiocatalysts. In particular, the production of a nanobiocatalyst could be achieved that retained a higher percentage of its relative activity over the tested pH range (3-7) compared to the dissolved or separately immobilized enzymes. Furthermore, a nanobiocatalyst could be formulated able to oxidize a broader substrate range than the dissolved or separately immobilized enzymes. Thereby, the potential of the nanobiocatalyst for application in biochemical oxidation applications such as the elimination of multiple target pollutants in biologically treated wastewater has been illustrated

DRELIO : Un drone hélicoptère pour le suivi des zones littorales

International audienceLa connaissance du littoral, sa protection, son aménagement nécessitent un suivi des changements qui s'y produisent. Toutefois, en France, devant l'étendue des façades maritimes à couvrir, les techniques de mesures in situ ne peuvent être appliquées de façon systématique. Dans ce cas, les techniques de télédétection spatiale ou aérienne sont des approches complémentaires. A partir de ces plates-formes, des images stéréoscopiques multi-temporelles sont, après une série de traitements photogrammétriques appropriés, directement exploitables sous formes d'orthophotographies et de Modèles Numériques de Terrain (MNT). Ce type de produits permet notamment la quantification des changements morphosédimentaires à l'interface Terre-Mer (transport transversal et longitudinal de sédiments, érosion,...). Actuellement, la résolution spatiale des MNT générés à partir d'images aériennes ou satellitaires (<50 cm) est insuffisante pour la plupart des applications sur la frange littorale. En outre, dans le cas d'interventions consécutives à un événement extrême (tempête, raz de marée, pollution...), ces systèmes manquent de souplesse (trajectoires prédéfinies, contraintes d'altitude, de vitesse, coût de mise en oeuvre...) L'utilisation de drones constitue donc une alternative intéressante pour des suivis de précision ou des interventions rapides

Selection signatures in goats reveal copy number variants underlying breed-defining coat color phenotypes

Domestication and human selection have formed diverse goat breeds with characteristic phenotypes. This process correlated with the fixation of causative genetic variants controlling breed-specific traits within regions of reduced genetic diversity, so called selection signatures or selective sweeps. Using whole genome sequencing of DNA pools (pool-seq) from 20 genetically diverse modern goat breeds and bezoars, we identified 2,239 putative selection signatures. In two Pakistani goat breeds, Pak Angora and Barbari, we found selection signatures in a region harboring KIT, a gene involved in melanoblast development, migration, and survival. The search for candidate causative variants responsible for these selective sweeps revealed two different copy number variants (CNVs) downstream of KIT that were exclusively present in white Pak Angora and white-spotted Barbari goats. Several Swiss goat breeds selected for specific coat colors showed selection signatures at the ASIP locus encoding the agouti signaling protein. Analysis of these selective sweeps revealed four different CNVs associated with the white or tan (AWt), Swiss markings (Asm), badgerface (Ab), and the newly proposed peacock (Apc) allele. RNA-seq analyses on skin samples from goats with the different CNV alleles suggest that the identified structural variants lead to an altered expression of ASIP between eumelanistic and pheomelanistic body areas. Our study yields novel insights into the genetic control of pigmentation by identifying six functionally relevant CNVs. It illustrates how structural changes of the genome have contributed to phenotypic evolution in domestic goats

Advanced enzymatic elimination of phenolic contaminants in wastewater: a nano approach at field scale

The removal of recalcitrant chemicals in wastewater treatment systems is an increasingly relevant issue in industrialized countries. The elimination of persistent xenobiotics such as endocrine-disrupting chemicals (EDCs) emitted by municipal and industrial sewage treatment plants remains an unsolved challenge. The existing efficacious physico-chemical methods, such as advanced oxidation processes, are resource-intensive technologies. In this work, we investigated the possibility to remove phenolic EDCs [i.e., bisphenol A (BPA)] by means of a less energy and chemical consuming technology. To that end, cheap and resistant oxidative enzymes, i.e., laccases, were immobilized onto silica nanoparticles. The resulting nanobiocatalyst produced at kilogram scale was demonstrated to possess a broad substrate spectrum regarding the degradation of recalcitrant pollutants. This nanobiocatalyst was applied in a membrane reactor at technical scale for tertiary wastewater treatment. The system efficiently removed BPA and the results of long-term field tests illustrated the potential of fumed silica nanoparticles/laccase composites for advanced biological wastewater treatment

Estimating the greenhouse gas fluxes of European grassland with a process based model: Part 1. Model evaluation from in-situ measurements

International audienceWe improved a process-oriented biogeochemical model of carbon and nitrogen cycling in grasslands and tested it against in situ measurements of biomass and CO2 and CH4 fluxes at five European grassland sites. The new version of the model (PASIM) calculates the growth and senescence of aboveground vegetation biomass accounting for sporadic removals when the grassland is cut and for continuous removals when it is grazed. Limitations induced by high leaf area index (LAI), soil water deficits and aging of leaves are also included. We added to this a simple empirical formulation to account for the detrimental impact on vegetation of trampling and excreta by grazing animals. Finally, a more realistic methane emission module than is currently used was introduced on the basis of the quality of the animals' diet. Evaluation of this improved version of PASIM is performed at (1) Laqueuille, France, on grassland continuously grazed by cattle with two plots of intensive and extensive grazing intensities, (2) Oensingen, Switzerland, on cut grassland with two fertilized and nonfertilized plots, and (3) Carlow, Ireland, on grassland that is both cut and grazed by cattle during the growing season. In addition, we compared the modeled animal CH4 emissions with in situ measurements on cattle for two grazing intensities at the grazed grassland site of Laqueuille. Altogether, when all improvements to the PASIM model are included, we found that the new parameterizations resulted into a better fit to the observed seasonal cycle of biomass and of measured CO2 and CH4 fluxes. However, the large uncertainties in measurements of biomass and LAI make simulation of biomass dynamics difficult to make. Also simulations for cut grassland are better than for grazed swards. This work paves the way for simulating greenhouse gas fluxes over grasslands in a spatially explicit manner, in order to quantify and understand the past, present and future role of grasslands in the greenhouse gas budget of the European continent

Climate control of terrestrial carbon exchange across biomes and continents

Understanding the relationships between climate and carbon exchange by terrestrial ecosystems is critical to predict future levels of atmospheric carbon dioxide because of the potential accelerating effects of positive climate-carbon cycle feedbacks. However, directly observed relationships between climate and terrestrial CO2exchange with the atmosphere across biomes and continents are lacking. Here we present data describing the relationships between net ecosystem exchange of carbon (NEE) and climate factors as measured using the eddy covariance method at 125 unique sites in various ecosystems over six continents with a total of 559 site-years. We find that NEE observed at eddy covariance sites is (1) a strong function of mean annual temperature at mid- and high-latitudes, (2) a strong function of dryness at mid- and low-latitudes, and (3) a function of both temperature and dryness around the mid-latitudinal belt (45°N). The sensitivity of NEE to mean annual temperature breaks down at ∼16 ®C (a threshold value of mean annual temperature), above which no further increase of CO,.2uptake with temperature was observed and dryness influence overrules temperature influence. © 2010 lOP Publishing Ltd

Global maps of soil temperature

Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1-km2 resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1-km2 pixels (summarized from 8519 unique temperature sensors) across all the world's major terrestrial biomes, and coarse-grained air temperature estimates from ERA5-Land (an atmospheric reanalysis by the European Centre for Medium-Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (−0.7 ± 2.3°C). The observed substantial and biome-specific offsets emphasize that the projected impacts of climate and climate change on near-surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil-related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications