Grand Challenges in Terrestrial Microbiology

Understanding the functional role of different microbial populations is essential to ascertain whether environmental factors affecting their diversity, activity, and physiology will impact the functioning of terrestrial ecosystems. The soil environment represents one of the largest reservoirs of microbes in the biosphere and is the most significant in linking the activity of humans with the interaction and alteration of the major biogeochemical cycles. The global nitrogen cycle has been massively accelerated through the annual removal of over 100 Tg of atmospheric nitrogen for the production and use of fertilizers (Grube

Launching the Grand Challenges for Ocean Conservation

The ten most pressing Grand Challenges in Oceans Conservation were identified at the Oceans Big Think and described in a detailed working document:A Blue Revolution for Oceans: Reengineering Aquaculture for SustainabilityEnding and Recovering from Marine DebrisTransparency and Traceability from Sea to Shore:  Ending OverfishingProtecting Critical Ocean Habitats: New Tools for Marine ProtectionEngineering Ecological Resilience in Near Shore and Coastal AreasReducing the Ecological Footprint of Fishing through Smarter GearArresting the Alien Invasion: Combating Invasive SpeciesCombatting the Effects of Ocean AcidificationEnding Marine Wildlife TraffickingReviving Dead Zones: Combating Ocean Deoxygenation and Nutrient Runof

Realizing the Potential of Marine Biotechnology : Challenges and Opportunities

A paid open access option is available for this journal. Author's final version or publisher's version/PDF Authors may deposit in funding agency designated repository after 12 monthsPeer reviewedPublisher PD

Arctic Soil Governs Whether Climate Change Drives Global Losses or Gains in Soil Carbon

Key uncertainties in terrestrial carbon cycle projections revolve around the timing, direction, and magnitude of the carbon cycle feedback to climate change. This is especially true in carbon-rich Arctic ecosystems, where permafrost soils contain roughly one third of the world's soil carbon stocks, which are likely vulnerable to loss. Using an ensemble of soil biogeochemical models that reflect recent changes in the conceptual understanding of factors responsible for soil carbon persistence, we quantify potential soil carbon responses under two representative climate change scenarios. Our results illustrate that models disagree on the sign and magnitude of global soil changes through 2100, with disagreements primarily driven by divergent responses of Arctic systems. These results largely reflect different assumptions about the nature of soil carbon persistence and vulnerabilities, underscoring the challenges associated with setting allowable greenhouse gas emission targets that will limit global warming to 1.5°C

Expanding the scale of aquatic sciences: The role of the National Ecological Observatory Network (NEON)

Citation: Goodman, K. J., Parker, S. M., Edmonds, J. W., & Zeglin, L. H. (2015). Expanding the scale of aquatic sciences: The role of the National Ecological Observatory Network (NEON). Freshwater Science, 34(1), 377-385. doi:10.1086/679446The current and future direction of aquatic ecological research leans toward addressing questions that cover multiple scales and levels of complexity. Historically, the ability to do comparative aquatic research across large spatial and temporal scales has been impeded by a lack of comparable measurements, standard methods, and a well organized data management and retrieval system. The National Ecological Observatory Network (NEON) is the first continental-scale ecological observation system designed to collect and provide freely available data on the drivers and responses of ecological change. In this paper, we describe past and present attempts to work across multiple scales in aquatic ecology, and the potential use of NEON aquatics data and infrastructure by researchers to integrate and expand ecological research programs and address novel ecological questions. © 2015 by The Society for Freshwater Science

Marine Biotechnology: A New Vision and Strategy for Europe

Marine Board-ESF The Marine Board provides a pan-European platform for its member organisations to develop common priorities, to advance marine research, and to bridge the gap between science and policy in order to meet future marine science challenges and opportunities. The Marine Board was established in 1995 to facilitate enhanced cooperation between European marine science organisations (both research institutes and research funding agencies) towards the development of a common vision on the research priorities and strategies for marine science in Europe. In 2010, the Marine Board represents 30 Member Organisations from 19 countries. The Marine Board provides the essential components for transferring knowledge for leadership in marine research in Europe. Adopting a strategic role, the Marine Board serves its Member Organisations by providing a forum within which marine research policy advice to national agencies and to the European Commission is developed, with the objective of promoting the establishment of the European Marine Research Area

Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes

The advent of genomic-, transcriptomic- and proteomic-based approaches has revolutionized our ability to describe marine microbial communities, including biogeography, metabolic potential and diversity, mechanisms of adaptation, and phylogeny and evolutionary history. New interdisciplinary approaches are needed to move from this descriptive level to improved quantitative, process-level understanding of the roles of marine microbes in biogeochemical cycles and of the impact of environmental change on the marine microbial ecosystem. Linking studies at levels from the genome to the organism, to ecological strategies and organism and ecosystem response, requires new modelling approaches. Key to this will be a fundamental shift in modelling scale that represents micro-organisms from the level of their macromolecular components. This will enable contact with omics data sets and allow acclimation and adaptive response at the phenotype level (i.e. traits) to be simulated as a combination of fitness maximization and evolutionary constraints. This way forward will build on ecological approaches that identify key organism traits and systems biology approaches that integrate traditional physiological measurements with new insights from omics. It will rely on developing an improved understanding of ecophysiology to understand quantitatively environmental controls on microbial growth strategies. It will also incorporate results from experimental evolution studies in the representation of adaptation. The resulting ecosystem-level models can then evaluate our level of understanding of controls on ecosystem structure and function, highlight major gaps in understanding and help prioritize areas for future research programs. Ultimately, this grand synthesis should improve predictive capability of the ecosystem response to multiple environmental drivers

Meta-analysis reveals ammonia-oxidizing bacteria respond more strongly to nitrogen addition than ammonia-oxidizing archaea

Shifts in microbial communities driven by anthropogenic nitrogen (N) addition have broad-scale ecological consequences. However, responses of microbial groups to exogenous N supply vary considerably across studies, hindering efforts to predict community changes. We used meta-analytical techniques to explore how amoA gene abundances of ammonia-oxidizing archaea (AOA) and bacteria (AOB) respond to N addition, and found that N addition increased AOA and AOB abundances by an average of 27% and 326%, respectively. Responses of AOB varied by study type, ecosystem, fertilizer type, and soil pH, and were strongest in unmanaged wildland soils and soils fertilized with inorganic N sources. Increases in nitrification potential with N addition significantly correlated with only AOB. Our analyses suggest that elevated N supply enhances soil nitrification potential by increasing AOB populations, and that this effect may be most pronounced in unmanaged wildland soils