15,173 research outputs found
Inviwo -- A Visualization System with Usage Abstraction Levels
The complexity of today's visualization applications demands specific
visualization systems tailored for the development of these applications.
Frequently, such systems utilize levels of abstraction to improve the
application development process, for instance by providing a data flow network
editor. Unfortunately, these abstractions result in several issues, which need
to be circumvented through an abstraction-centered system design. Often, a high
level of abstraction hides low level details, which makes it difficult to
directly access the underlying computing platform, which would be important to
achieve an optimal performance. Therefore, we propose a layer structure
developed for modern and sustainable visualization systems allowing developers
to interact with all contained abstraction levels. We refer to this interaction
capabilities as usage abstraction levels, since we target application
developers with various levels of experience. We formulate the requirements for
such a system, derive the desired architecture, and present how the concepts
have been exemplary realized within the Inviwo visualization system.
Furthermore, we address several specific challenges that arise during the
realization of such a layered architecture, such as communication between
different computing platforms, performance centered encapsulation, as well as
layer-independent development by supporting cross layer documentation and
debugging capabilities
Numerical simulation of the stress-strain state of the dental system
We present mathematical models, computational algorithms and software, which
can be used for prediction of results of prosthetic treatment. More interest
issue is biomechanics of the periodontal complex because any prosthesis is
accompanied by a risk of overloading the supporting elements. Such risk can be
avoided by the proper load distribution and prediction of stresses that occur
during the use of dentures. We developed the mathematical model of the
periodontal complex and its software implementation. This model is based on
linear elasticity theory and allows to calculate the stress and strain fields
in periodontal ligament and jawbone. The input parameters for the developed
model can be divided into two groups. The first group of parameters describes
the mechanical properties of periodontal ligament, teeth and jawbone (for
example, elasticity of periodontal ligament etc.). The second group
characterized the geometric properties of objects: the size of the teeth, their
spatial coordinates, the size of periodontal ligament etc. The mechanical
properties are the same for almost all, but the input of geometrical data is
complicated because of their individual characteristics. In this connection, we
develop algorithms and software for processing of images obtained by computed
tomography (CT) scanner and for constructing individual digital model of the
tooth-periodontal ligament-jawbone system of the patient. Integration of models
and algorithms described allows to carry out biomechanical analysis on
three-dimensional digital model and to select prosthesis design.Comment: 19 pages, 9 figure
A Future for Integrated Diagnostic Helping
International audienceMedical systems used for exploration or diagnostic helping impose high applicative constraints such as real time image acquisition and displaying. A large part of computing requirement of these systems is devoted to image processing. This chapter provides clues to transfer consumers computing architecture approaches to the benefit of medical applications. The goal is to obtain fully integrated devices from diagnostic helping to autonomous lab on chip while taking into account medical domain specific constraints.This expertise is structured as follows: the first part analyzes vision based medical applications in order to extract essentials processing blocks and to show the similarities between consumerâs and medical vision based applications. The second part is devoted to the determination of elementary operators which are mostly needed in both domains. Computing capacities that are required by these operators and applications are compared to the state-of-the-art architectures in order to define an efficient algorithm-architecture adequation. Finally this part demonstrates that it's possible to use highly constrained computing architectures designed for consumers handled devices in application to medical domain. This is based on the example of a high definition (HD) video processing architecture designed to be integrated into smart phone or highly embedded components. This expertise paves the way for the industrialisation of intergraded autonomous diagnostichelping devices, by showing the feasibility of such systems. Their future use would also free the medical staff from many logistical constraints due the deployment of todayâs cumbersome systems
CMOS-3D smart imager architectures for feature detection
This paper reports a multi-layered smart image sensor architecture for feature extraction based on detection of interest points. The architecture is conceived for 3-D integrated circuit technologies consisting of two layers (tiers) plus memory. The top tier includes sensing and processing circuitry aimed to perform Gaussian filtering and generate Gaussian pyramids in fully concurrent way. The circuitry in this tier operates in mixed-signal domain. It embeds in-pixel correlated double sampling, a switched-capacitor network for Gaussian pyramid generation, analog memories and a comparator for in-pixel analog-to-digital conversion. This tier can be further split into two for improved resolution; one containing the sensors and another containing a capacitor per sensor plus the mixed-signal processing circuitry. Regarding the bottom tier, it embeds digital circuitry entitled for the calculation of Harris, Hessian, and difference-of-Gaussian detectors. The overall system can hence be configured by the user to detect interest points by using the algorithm out of these three better suited to practical applications. The paper describes the different kind of algorithms featured and the circuitry employed at top and bottom tiers. The Gaussian pyramid is implemented with a switched-capacitor network in less than 50 ÎŒs, outperforming more conventional solutions.Xunta de Galicia 10PXIB206037PRMinisterio de Ciencia e InnovaciĂłn TEC2009-12686, IPT-2011-1625-430000Office of Naval Research N00014111031
Three-Dimensional GPU-Accelerated Active Contours for Automated Localization of Cells in Large Images
Cell segmentation in microscopy is a challenging problem, since cells are
often asymmetric and densely packed. This becomes particularly challenging for
extremely large images, since manual intervention and processing time can make
segmentation intractable. In this paper, we present an efficient and highly
parallel formulation for symmetric three-dimensional (3D) contour evolution
that extends previous work on fast two-dimensional active contours. We provide
a formulation for optimization on 3D images, as well as a strategy for
accelerating computation on consumer graphics hardware. The proposed software
takes advantage of Monte-Carlo sampling schemes in order to speed up
convergence and reduce thread divergence. Experimental results show that this
method provides superior performance for large 2D and 3D cell segmentation
tasks when compared to existing methods on large 3D brain images
Master slave en-face OCT/SLO
Master Slave optical coherence tomography (MS-OCT) is an OCT method that does not require resampling of data and can be used to deliver en-face images from several depths simultaneously. As the MS-OCT method requires important computational resources, the number of multiple depth en-face images that can be produced in real-time is limited. Here, we demonstrate progress in taking advantage of the parallel processing feature of the MS-OCT technology. Harnessing the capabilities of graphics processing units (GPU)s, information from 384 depth positions is acquired in one raster with real time display of up to 40 en-face OCT images. These exhibit comparable resolution and sensitivity to the images produced using the conventional Fourier domain based method. The GPU facilitates versatile real time selection of parameters, such as the depth positions of the 40 images out of the set of 384 depth locations, as well as their axial resolution. In each updated displayed frame, in parallel with the 40 en-face OCT images, a scanning laser ophthalmoscopy (SLO) lookalike image is presented together with two B-scan OCT images oriented along rectangular directions. The thickness of the SLO lookalike image is dynamically determined by the choice of number of en-face OCT images displayed in the frame and the choice of differential axial distance between them
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