Emission Line Galaxies and Active Galactic Nuclei in WINGS clusters

We present the analysis of the emission line galaxies members of 46 low redshift (0.04 < z < 0.07) clusters observed by WINGS (WIde-field Nearby Galaxy cluster Survey, Fasano et al. 2006). Emission line galaxies were identified following criteria that are meant to minimize biases against non-star forming galaxies and classified employing diagnostic diagrams. We have examined the emission line properties and frequencies of star forming galaxies, transition objects and active galactic nuclei (AGNs: LINERs and Seyferts), unclassified galaxies with emission lines, and quiescent galaxies with no detectable line emission. A deficit of emission line galaxies in the cluster environment is indicated by both a lower frequency with respect to control samples, and by a systematically lower Balmer emission line equivalent width and luminosity (up to one order of magnitude in equivalent width with respect to control samples for transition objects) that implies a lower amount of ionised gas per unit mass and a lower star formation rate if the source is classified as Hii region. A sizable population of transition objects and of low-luminosity LINERs (approx. 10 - 20% of all emission line galaxies) is detected among WINGS cluster galaxies. With respect to Hii sources they are a factor of approx. 1.5 more frequent than (or at least as frequent as) in control samples. Transition objects and LINERs in cluster are most affected in terms of line equivalent width by the environment and appear predominantly consistent with "retired" galaxies. Shock heating can be a possible gas excitation mechanism able to account for observed line ratios. Specific to the cluster environment, we suggest interaction between atomic and molecular gas and the intracluster medium as a possible physical cause of line-emitting shocks.Comment: Astronomy and Astrophysics, accepte

A Global Human Settlement Layer from optical high resolution imagery - Concept and first results

A general framework for processing of high and very-high resolution imagery for creating a Global Human Settlement Layer (GHSL) is presented together with a discussion on the results of the first operational test of the production workflow. The test involved the mapping of 24.3 millions of square kilometres of the Earth surface spread over four continents, corresponding to an estimated population of 1.3 billion of people in 2010. The resolution of the input image data ranges from 0.5 to 10 meters, collected by a heterogeneous set of platforms including satellite SPOT (2 and 5), CBERS-2B, RapidEye (2 and 4), WorldView (1 and 2), GeoEye-1, QuickBird-2, Ikonos-2, and airborne sensors. Several imaging modes were tested including panchromatic, multispectral and pan-sharpened images. A new fully automatic image information extraction, generalization and mosaic workflow is presented that is based on multiscale textural and morphological image features extraction. New image feature compression and optimization are introduced, together with new learning and classification techniques allowing for the processing of HR/VHR image data using low-resolution thematic layers as reference. A new systematic approach for quality control and validation allowing global spatial and thematic consistency checking is proposed and applied. The quality of the results are discussed by sensor, by band, by resolution, and eco-regions. Critical points, lessons learned and next steps are highlighted.JRC.G.2-Global security and crisis managemen

Systematics of hairy armadillos and the taxonomic status of the Andean hairy armadillo (<i>Chaetophractus nationi</i>)

Hairy armadillos constitute an ecologically homogeneous and morphologically similar group with currently 5 species classified in the subfamily Euphractinae. Among them, the Andean hairy armadillo Chaetophractus nationi (Xenarthra, Cingulata, Dasypodidae) is a small, endangered armadillo that has long been suspected to represent a high-altitude variant of Chaetophractus vellerosus. Here, we report the 1st phylogenetic systematics assessment of hairy armadillos using morphological and molecular analyses of all described species with focus on the status of the Andean hairy armadillo. Multivariate analyses of shape variation based on 3-dimensional landmark coordinates of skulls allowed a clear differentiation of each species with the exception of C. vellerosus and C. nationi, within which only a latitudinal and/or altitudinal gradient in size was apparent. Moreover, analyses of mitochondrial DNA control region (D-loop) revealed a single C. nationi haplotype that appeared to be identical with a C. vellerosus haplotype from Argentina. Identical sequences in C. vellerosus and C. nationi were also observed for 3 of the 5 non-coding nuclear markers investigated. Based on these data, we propose that C. nationi should be considered as a synonym of C. vellerosus. However, this taxonomic change should not preclude the protection of the high-altitude Bolivian populations that are steadily declining because of their overexploitation for traditional purposes. Finally, phylogenetic analyses of euphractine armadillos based on a combination of 6 non-coding nuclear markers and 2 nuclear exons suggest the paraphyly of the genus Chaetophractus, with C. vellerosus being more closely related to Zaedyus pichiy than to C. villosus.Los armadillos peludos constituyen un grupo ecológicamente homogéneo y morfológicamente similar que actualmente consiste de 5 especies clasificadas en la subfamilia Euphractinae. Una de ellas, el quirquincho Andino Chaetophractus nationi (Xenarthra, Cingulata, Dasypodidae), es un pequeño armadillo amenazado de extinción del cual se ha sospechado durante mucho tiempo que representa una variedad de altitud de Chaetophractus vellerosus. Aquí reportamos la primera evaluación sistemática filogenética de armadillos peludos utilizando análisis morfológicos y moleculares de todas las especies descritas, poniendo un especial enfoque en el estado del quirquincho Andino. Los análisis multivariados de la forma basados en landmarks tridimensionales de cráneos, permitieron distinguir claramente las especies, con la excepción de C. vellerosus y C. nationi en los cuales sólo se halló un gradiente latitudinal y/o altitudinal en el tamaño. Además, los análisis de la región control del ADN mitocondrial (D-loop) mostraron un solo haplotipo de C. nationi, que fue idéntico a un haplotipo de C. vellerosus de Argentina. También se observaron secuencias idénticas para C. vellerosus y C. nationi en 3 de los 5 marcadores nucleares no codificantes analizados. A partir de estos resultados proponemos que C. nationi sea considerado sinónimo de C. vellerosus. Sin embargo, este cambio taxonómico no debe excluir la protección de las poblaciones altoandinas de Bolivia que están sufriendo una reducción continua debido a su sobreexplotación para fines tradicionales. Finalmente, los análisis filogenéticos de los armadillos eufractinos basados en una combinación de 6 marcadores nucleares no codificantes y 2 exones nucleares sugieren la parafilia del género Chaetophractus, Siendo C. vellerosus relacionado mas estrechamente con Zaedyus pichiy que con C. villosus.Facultad de Ciencias Naturales y Muse

Video coding for compression and content-based functionality

The lifetime of this research project has seen two dramatic developments in the area of digital video coding. The first has been the progress of compression research leading to a factor of two improvement over existing standards, much wider deployment possibilities and the development of the new international ITU-T Recommendation H.263. The second has been a radical change in the approach to video content production with the introduction of the content-based coding concept and the addition of scene composition information to the encoded bit-stream. Content-based coding is central to the latest international standards efforts from the ISO/IEC MPEG working group. This thesis reports on extensions to existing compression techniques exploiting a priori knowledge about scene content. Existing, standardised, block-based compression coding techniques were extended with work on arithmetic entropy coding and intra-block prediction. These both form part of the H.263 and MPEG-4 specifications respectively. Object-based coding techniques were developed within a collaborative simulation model, known as SIMOC, then extended with ideas on grid motion vector modelling and vector accuracy confidence estimation. An improved confidence measure for encouraging motion smoothness is proposed. Object-based coding ideas, with those from other model and layer-based coding approaches, influenced the development of content-based coding within MPEG-4. This standard made considerable progress in this newly adopted content based video coding field defining normative techniques for arbitrary shape and texture coding. The means to generate this information, the analysis problem, for the content to be coded was intentionally not specified. Further research work in this area concentrated on video segmentation and analysis techniques to exploit the benefits of content based coding for generic frame based video. The work reported here introduces the use of a clustering algorithm on raw data features for providing initial segmentation of video data and subsequent tracking of those image regions through video sequences. Collaborative video analysis frameworks from COST 21 l qual and MPEG-4, combining results from many other segmentation schemes, are also introduced

Interrogation of modern and ancient genomes reveals the complex domestic history of cattle

The analysis of mitochondrial and nuclear DNA sequence polymorphisms from modern cattle populations has had a profound impact on our understanding of the events surrounding the domestication of cattle. From these studies, it has been possible to distinguish between pre- and post-domestic genetic differentiation, supporting previous assertions from archaeological studies and, in some cases, revealing novel aspects of the demographic history of cattle. Analyses of genetic material retrieved from the remains of extinct ancestral wild cattle have also added valuable layers of information pertaining to cattle domestic origins; however, information from these investigations have, in general, been limited to small, variable portions of the mitochondrial genome owing to technical challenges associated with the retrieval and amplification of ancient DNA. In recent years, however, new high-throughput, massively parallel genomics technology platforms, such as single-nucleotide polymorphism (SNP) genotyping arrays and next-generation sequencing (NGS), have provided a new impetus to the studies of genetic variation in extant and ancient cattle. Arrays of SNP have facilitated high-resolution genetic surveys of global cattle populations and detection of ancient and recent genomic selective sweeps. Next-generation sequencing analyses of modern and ancient cattle hold great promise for identifying and cataloging of pre- and post-domestication patterns of genomic variation and correlating this with natural and artificial selection processes

Zooming in on major mergers: dense, starbursting gas in cosmological simulations

We introduce the `Illustris zoom simulation project', which allows the study of selected galaxies forming in the $\Lambda$CDM cosmology with a 40 times better mass resolution than in the parent large-scale hydrodynamical Illustris simulation. We here focus on the starburst properties of the gas in four cosmological simulations of major mergers. The galaxies in our high-resolution zoom runs exhibit a bursty mode of star formation with gas consumption timescales 10 times shorter than for the normal star formation mode. The strong bursts are only present in the simulations with the highest resolution, hinting that a too low resolution is the reason why the original Illustris simulation showed a dearth of starburst galaxies. Very pronounced bursts of star formation occur in two out of four major mergers we study. The high star formation rates, the short gas consumption timescales and the morphology of these systems strongly resemble observed nuclear starbursts. This is the first time that a sample of major mergers is studied through self-consistent cosmological hydrodynamical simulations instead of using isolated galaxy models setup on a collision course. We also study the orbits of the colliding galaxies and find that the starbursting gas preferentially appears in head-on mergers with very high collision velocities. Encounters with large impact parameters do typically not lead to the formation of starbursting gas.Comment: 13 pages, 7 figures, Accepted for publication in MNRA

Region-based representations of image and video: segmentation tools for multimedia services

This paper discusses region-based representations of image and video that are useful for multimedia services such as those supported by the MPEG-4 and MPEG-7 standards. Classical tools related to the generation of the region-based representations are discussed. After a description of the main processing steps and the corresponding choices in terms of feature spaces, decision spaces, and decision algorithms, the state of the art in segmentation is reviewed. Mainly tools useful in the context of the MPEG-4 and MPEG-7 standards are discussed. The review is structured around the strategies used by the algorithms (transition based or homogeneity based) and the decision spaces (spatial, spatio-temporal, and temporal). The second part of this paper proposes a partition tree representation of images and introduces a processing strategy that involves a similarity estimation step followed by a partition creation step. This strategy tries to find a compromise between what can be done in a systematic and universal way and what has to be application dependent. It is shown in particular how a single partition tree created with an extremely simple similarity feature can support a large number of segmentation applications: spatial segmentation, motion estimation, region-based coding, semantic object extraction, and region-based retrieval.Peer ReviewedPostprint (published version

Glycine receptor alpha subunit (GlyRa) specific inhibition contributes to ganglion cell signaling in mouse retina.

In the retina, numerous types of neurons are wired together in a highly specific albeit complex pattern. This sophisticated retinal network allows extraction and encoding of more than 20 representations of the visual scene in its output neurons, the retinal ganglion cells (RGCs). Within the inner plexiform layer (IPL) of retina, glycine receptors (GlyRs) are expressed on different cell classes and modulate RGC visual activity to light onset (ON RGCs) and to light offset (OFF RGCs), for example, their temporal precision and gain control. There are four GlyR alpha subunits (GlyRα1-4) with differential expression patterns in IPL. Each mediates spontaneous inhibitory postsynaptic currents (sIPSCs) with different decay kinetics. Moreover, GlyR alpha subunit-specific expression was discovered across different RGC types. This evidence suggests subunit-specific roles for glycinergic inhibitory circuits to modulate the RGC visual outputs. However, the details remain largely unknown. To investigate glycinergic subunit-specific modulation, I used GlyRα subunit knockout (KO) mouse lines, which lack GlyRα2 (Glra2-/-), GlyRα3 (Glra3-/-) or both (Glra2/3-/-). I found that GlyRα2 and GlyRα3 enhance ON RGCs visual responses whereas only GlyRα2 enhances OFF RGCs visual responses. Second, I used viral tools to manipulate the expression of the GlyRα1 subunit on RGCs to examine its role in visual processing. Adeno-associated viruses (AAVs) were injected into dorsal lateral geniculate nucleus and transported retrogradely to infect RGCs and generate shRNA to selectively knockdown GlyRα1 expression. In OFFαTransient RGCs, which predominantly express GlyRα1, shRNA almost completely eliminated all glycinergic input and I showed that this input increases signal to noise ratio of OFFαTransient RGC visual responses. I expanded our understanding of subunit-specificity by surveying subunit specific expression and currents across eight identified RGCs in the PVcre mouse. By comparing co-localization of GlyR α subunit puncta on identified RGC dendrites with the decay kinetics of their sIPSCs, I showed that there is subunit-specific expression of GlyRs. My data not only support the hypothesis of subunit-specific glycinergic inhibitory modulation in retinal signaling, but provide new tools to further explore their individual roles in shaping RGC visual function