The genome sequence of the ringed china-mark, Parapoynx stratiotata (Linnaeus, 1758)

We present a genome assembly from an individual male Parapoynx stratiotata (the ringed china-mark; Arthropoda; Insecta; Lepidoptera; Crambidae). The genome sequence is 478 megabases in span. The majority of the assembly (99.98%) is scaffolded into 30 chromosomal pseudomolecules, with the Z sex chromosome assembled. The mitochondrial genome was also assembled and is 15.4 kilobases in length

The implications of an invasive species on the reliability of macroinverterbrate biomonitoring tools used in freshwater ecological assessments.

Invasive species represent one of greatest threats to aquatic biodiversity globally and are widely acknowledged to be instrumental in modifying native community structure. Despite this, little is known about how the increasing range expansion of invasive taxa may affect routine biomonitoring tools widely employed to measure or quantify environmental quality in lotic systems. This study examined the impact of an invasive freshwater crayfish on commonly employed riverine macroinvertebrate biomonitoring tools (scores and indices) designed to respond to a range of stressors. Data from long term monitoring sites on both ‘control’ and invaded rivers in England were examined to assess changes to biomonitoring scores following invasion by signal crayfish (Pacifastacus leniusculus). Results indicate that routine biomonitoring tools used to quantify potential ecological stressors which are weighted by abundance, such as the Lotic-invertebrate Index for Flow Evaluation (LIFE) score and Proportion of Sediment-sensitive Invertebrates (PSI), were subject to significant inflation following invasion. In contrast, indices based simply on the presence of taxa, such as the Average Score Per-Taxon (ASPT - a derivative of BMWP), displayed no changes compared to control rivers; or in the case of the Biological Monitoring Working Party Score (BMWP), NTAXA and EPT richness, no consistent pattern following invasion. Season had a significant effect on the interaction of crayfish and LIFE and PSI scores. Autumn samples were subject to statistical inflation following crayfish invasion whilst Spring samples exhibited no significant change. The results suggest that care should be taken when interpreting routine macroinvertebrate biomonitoring data where non-native crayfish are present, or in instances where their presence is suspected

A sediment-specific family-level biomonitoring tool to identify the impacts of fine sediment in temperate rivers and streams

AbstractAnthropogenic modifications of sediment load can cause ecological degradation in stream and river ecosystems. However, in practice, identifying when and where sediment is the primary cause of ecological degradation is a challenging task. Biological communities undergo natural cycles and variation over time, and respond to a range of physical, chemical and biological pressures. Furthermore, fine sediments are commonly associated with numerous other pressures that are likely to influence aquatic biota. The use of conventional, non-biological monitoring to attribute cause and effect would necessitate measurement of multiple parameters, at sufficient temporal resolution, and for a significant period of time. Biomonitoring tools, which use low-frequency measurements of biota to gauge and track changes in the environment, can provide a valuable alternative means to detecting the effects of a given pressure. In this study, we develop and test an improved macroinvertebrate, family-level and mixed-level biomonitoring tool for fine sediment. Biologically-based classifications of sediment sensitivity were supplemented by using empirical data of macroinvertebrate abundance and percentage fine sediment, collected across a wide range of temperate river and stream ecosystems (model training dataset n=2252) to assign detailed individual sensitivity weights to taxa. An optimum set of weights were identified by non-linear optimisation, as those that resulted in the highest Spearman’s rank correlation coefficient between the index (called the Empirically-weighted Proportion of Sediment-sensitive Invertebrates index; E-PSI) scores and deposited fine sediment in the model training dataset. The family and mixed-level tools performed similarly, with correlations with percentage fine sediment in the test dataset (n=84) of rs=−0.72 and rs=−0.70 p<0.01. Testing of the best performing family level version, over agriculturally impacted sites (n=754) showed similar correlations to fine sediment (rs=−0.68 p<0.01). The tools developed in this study have retained their biological basis, are easily integrated into contemporary monitoring agency protocols and can be applied retrospectively to historic datasets. Given the challenges of non-biological conventional monitoring of fine sediments and determining the biological relevance of the resulting data, a sediment-specific biomonitoring approach is highly desirable and will be a useful addition to the suite of pressure-specific biomonitoring tools currently used to infer the causes of ecological degradation

Flow variability and macroinvertebrate community response within riverine systems

River flow regimes, controlled by climatic and catchment factors, vary over a wide range of temporal and spatial scales. This hydrological dynamism is important in determining the structure and functioning of riverine ecosystems; however, such hydroecological associations remain poorly quantified. This paper explores and models relationships between a suite of flow regime predictors and macroinvertebrate community metrics from 83 rivers in England and Wales. A two-stage analytical approach was employed: (1) classification of 83 river basins based upon the magnitude and shape (form) of their long-term (1980 – 1999) average annual regime to group basins with similar flow responses; and (2) examination of relationships between a total of 201 flow regime descriptors identified by previous researchers and macroinvertebrate community metrics for the whole data set and long-term flow regime classes over an 11-year period (1990 – 2000). The classification method highlighted large-scale patterns in river flow regimes, identifying five magnitude classes and three shape classes. A west–east trend of flow regime magnitude (high-low) and timing (early-late peak) was displayed across the study area, reflecting climatic gradients and basin controls (e.g. lithology). From the suite of hydrological variables, those associated with the magnitude of the flow regime consistently produced the strongest relationships with macroinvertebrate community metrics for all sites and for the long-term regime composite classes. The results indicate that the classification (subdivision) of rivers into flow regime regions potentially offers a means of increasing predictive capacity and, in turn, better management of fluvial hydrosystems

The long-term effects of invasive signal crayfish (Pacifastacus leniusculus) on instream macroinvertebrate communities

Non-native species represent a significant threat to indigenous biodiversity and ecosystem functioning worldwide. It is widely acknowledged that invasive crayfish species may be instrumental in modifying benthic invertebrate community structure, but there is limited knowledge regarding the temporal and spatial extent of these effects within lotic ecosystems. This study investigates the long term changes to benthic macroinvertebrate community composition following the invasion of signal crayfish, Pacifastacus leniusculus, into English rivers. Data from long-term monitoring sites on 7 rivers invaded by crayfish and 7 rivers where signal crayfish were absent throughout the record (control sites) were used to examine how invertebrate community composition and populations of individual taxa changed as a result of invasion. Following the detection of non-native crayfish, significant shifts in invertebrate community composition were observed at invaded sites compared to control sites. This pattern was strongest during autumn months but was also evident during spring surveys. The observed shifts in community composition following invasion were associated with reductions in the occurrence of ubiquitous Hirudinea species (Glossiphonia complanata and Erpobdella octoculata), Gastropoda (Radix spp.), Ephemeroptera (Caenis spp.), and Trichoptera (Hydropsyche spp.); although variations in specific taxa affected were evident between regions and seasons. Changes in community structure were persistent over time with no evidence of recovery, suggesting that crayfish invasions represent significant perturbations leading to permanent changes in benthic communities. The results provide fundamental knowledge regarding non-native crayfish invasions of lotic ecosystems required for the development of future management strategies

An index to track the ecological effects of drought development and recovery on riverine invertebrate communities

© 2017 Elsevier Ltd In rivers, the ecological effects of drought typically result in gradual adjustments of invertebrate community structure and functioning, punctuated by sudden changes as key habitats, such as wetted channel margins, become dewatered and dry. This paper outlines the development and application of a new index (Drought Effect of Habitat Loss on Invertebrates – DEHLI) to quantify the effects of drought on instream macroinvertebrate communities by assigning weights to taxa on the basis of their likely association with key stages of channel drying. Two case studies are presented, in which the DEHLI index illustrates the ecological development of drought conditions and subsequent recovery. These examples demonstrate persistent drought effects months or several years after river flows recovered. Results derived using DEHLI are compared with an established macroinvertebrate flow velocity-reactive index (Lotic-invertebrate Index for Flow Evaluation – LIFE score) and demonstrates its greater sensitivity to drought conditions. Data from a number of rivers in south east England were used to calibrate a statistical model, which was then used to examine the response of DEHLI and LIFE to a hypothetical multi-year drought. This demonstrated a difference in response between sampling seasons, with the spring model indicating a lagged response due to delayed recolonisation and the autumn model differentiating habitat loss and flow velocity-driven responses. The application of DEHLI and the principles which underlie it allow the effects of drought on instream habitats and invertebrates associated with short or long term weather patterns to be monitored, whilst also allowing the identification of specific locations where intervention via river restoration, or revision of existing abstraction licensing, may be required to increase resilience to the effect of anthropogenic activities exacerbated by climate change

Disentangling responses to natural stressor and human impact gradients in river ecosystems across Europe

1. Rivers are dynamic ecosystems in which both human impacts and climate-driven drying events are increasingly common. These anthropogenic and natural stressors interact to influence the biodiversity and functioning of river ecosystems. Disentangling ecological responses to these interacting stressors is necessary to guide management actions that support ecosystems adapting to global change. 2. We analysed the independent and interactive effects of human impacts and natural drying on aquatic invertebrate communities—a key biotic group used to assess the health of European freshwaters. We calculated biological response metrics representing communities from 406 rivers in eight European countries: taxonomic richness, functional richness and redundancy, and biomonitoring indices that indicate ecological status. We analysed metrics based on the whole community and on a group of taxa with traits promoting resistance and/or resilience (‘high RR’) to drying. We also examined how responses vary across Europe in relation to climatic aridity. 3. Most community metrics decreased independently in response to impacts and drying. A richness-independent biomonitoring index (the average score per taxon; ASPT) showed particular potential for use in biomonitoring, and should be considered alongside new metrics representing high RR diversity, to promote accurate assessment of ecological status. 4. High RR taxonomic richness responded only to impacts, not drying. However, these predictors explained little variance in richness and other high RR metrics, potentially due to low taxonomic richness. Metric responsiveness could thus be enhanced by developing region-specific high RR groups comprising sufficient taxa with sufficiently variable impact sensitivities to indicate ecological status. 5. Synthesis and applications. Metrics are needed to assess the ecological status of dynamic river ecosystems—including those that sometimes dry—and thus to identify priority sites requiring action to tackle the causes of environmental degradation. Our results inform recommendations guiding the development of such metrics. We propose concurrent use of richness-independent ‘average score per taxon’ indices and metrics that characterize the richness of resistant and resilient taxa. We observed interactions between aridity, impacts and drying, highlighting that these new metrics should be region specific, river type specific and adaptable, promoting their ability to inform management actions that protect biodiversity in river ecosystems responding to climate change.European Cooperation in Science and Technology. Grant Number: CA1511

Pros and cons of different therapeutic antibody formats for recombinant antivenom development.

Antibody technologies are being increasingly applied in the field of toxinology. Fuelled by the many advances in immunology, synthetic biology, and antibody research, different approaches and antibody formats are being investigated for the ability to neutralize animal toxins. These different molecular formats each have their own therapeutic characteristics. In this review, we provide an overview of the advances made in the development of toxin-targeting antibodies, and discuss the benefits and drawbacks of different antibody formats in relation to their ability to neutralize toxins, pharmacokinetic features, propensity to cause adverse reactions, formulation, and expression for research and development (R&D) purposes and large-scale manufacturing. A research trend seems to be emerging towards the use of human antibody formats as well as camelid heavy-domain antibody fragments due to their compatibility with the human immune system, beneficial therapeutic properties, and the ability to manufacture these molecules cost-effectively

The vulnerability of British aquatic insects to climate change

Freshwater ecosystems are particularly at risk from climate change due to the intrinsic link between the physical properties of the water environment and those species that live there. Mayflies, stoneflies and caddisflies are key indicators of the health of freshwater environments and their biological traits and ecological preferences determine their vulnerability to climate change. Traits and preferences for 289 British species were analysed, with voltinism, length of flight period, altitudinal preference and affinity to headwaters being the main factors causing vulnerability. Sixteen species were deemed to be at risk from climate change. These species are distributed across Great Britain, but particular hotspots of vulnerability are present in upland areas. These areas should be targeted with mitigation measures to reduce the impacts of climate change on populations of aquatic insects