Fuentes y preservación de materia orgánica en sedimentos recientes del estuario del río Yangtze, China

The vertical distributions of bulk and molecular biomarker compositions in the samples from four sediment cores of the Changjiang (Yangtze River) Estuary were determined. The changes in the bulk and molecular compositions with depth suggest that there have been recent changes in the marine autogenic and terrigenous supply. In the site at the boundary of the turbidity maximum (Site 8) and the most southern site (Site 26), the autogenic and allochthonous inputs make almost the same contribution to sedimentary organic matter. In the site close to the river mouth (Site 11), the organic matter mainly comes from the terrestrial input carried by the Changjiang water, whereas, in the most eastern site (Site 17), the organic matter consists of a mixture of recent and ancient Changjiang delta sedimentary residues. Significant downcore fluctuations were observed in the patterns of the bulk and molecular compositions, as well as in several biomarker ratios, which also indicates the different anoxic conditions at different depths of the core besides the source variation. In addition, the distributions of molecular compounds show that the organic matter is a mixture of immature and mature in the sediments of the four cores, which further indicates that the microbial activity is active in anoxic conditions, especially in the surface sediment. The vertical distributions of molecular compounds also show that the autogenic marine organic matter is more easily degraded, and that the molecular compounds evolve from unstable steric configurations to stable ones in the early diagenetic processes.Este artículo analiza la distribución vertical de la composición mayoritaria y de biomarcadores moleculares en muestras de sedimentos de cuatro testigos obtenidos en el estuario del río Yangtze. Los cambios de composición en profundidad sugieren variaciones recientes de los aportes autógenos y terrígenos. En el máximo de turbidez y en sus limites (estación 8) y en la estación más al sur (estación 26), los aportes autógenos y alóctonos tienen casi la misma contribución a la materia orgánica sedimentaria. En la estación próxima a la desembocadura (estación 11), la materia orgánica procede principalmente de los aportes terrestres del río Yangtze, mientras que en la estación situada mas al Este (estación 17), la materia orgánica consiste en una mezcla de aportes recientes del río Yangtze y de residuos sedimentarios de un antiguo delta del mismo río. Fluctuaciones significantes de la composición mayoritaria y molecular, así como de biomarcadores, fueron observadas a lo largo de los testigos, lo cual indica también condiciones de anoxia diferentes a distintas profundidades, aparte de las diferencias en la procedencia de los sedimentos. Además, la distribución de compuestos moleculares muestra que la materia orgánica es una mezcla de sedimentos maduros e inmaduros en los cuatro testigos, lo cual indica que la actividad microbiana es activa en condiciones de anoxia, especialmente en los sedimentos superficiales. La distribución vertical de los compuestos moleculares también muestra que la materia orgánica marina autógena es más fácilmente degradable, y que los compuestos moleculares evolucionan desde configuraciones inestables estéricas a configuraciones estables en las primeras fases de la diagénesis

Decomposition formula and stationary measures for stochastic Lotka-Volterra system with applications to turbulent convection

Motivated by the remarkable works of Busse and his collaborators in the 1980s on turbulent convection in a rotating layer, we explore the long-run behavior of stochastic Lotka-Volterra (LV) systems both in pull-back trajectories and in stationary measures. A decomposition formula is established to describe the relationship between the solutions of stochastic and deterministic LV systems and the stochastic logistic equation. By virtue of this formula, it can be verified that every pull-back omega limit set is an omega limit set of the deterministic LV system multiplied by the random equilibrium of the stochastic logistic equation. The formula is also used to derive the existence of a stationary measure, its support and ergodicity. We prove the tightness of stationary measures and that their weak limits are invariant with respect to the corresponding deterministic system and supported on the Birkhoff center. The developed theory is successfully utilized to completely classify three dimensional competitive stochastic LV systems into 37 classes. The expected occupation measures weakly converge to a strongly mixing measure and all stationary measures are obtained for each class except class 27 c). Among them there are two classes possessing a continuum of random closed orbits and strongly mixing measures supported on the cone surfaces, which weakly converge to the Haar measures of periodic orbits as the noise intensity vanishes. The class 27 c) is an exception, almost every pull-back trajectory cyclically oscillates around the boundary of the stochastic carrying simplex characterized by three unstable stationary solutions. The limit of the expected occupation measures is neither unique nor ergodic. These are consistent with symptoms of turbulence. (C) 2019 Elsevier Masson SAS. All rights reserved.Peer reviewe

Genetic and functional characterization of disease associations explains comorbidity

Understanding relationships between diseases, such as comorbidities, has important socio-economic implications, ranging from clinical study design to health care planning. Most studies characterize disease comorbidity using shared genetic origins, ignoring pathway-based commonalities between diseases. In this study, we define the disease pathways using an interactome-based extension of known disease-genes and introduce several measures of functional overlap. The analysis reveals 206 significant links among 94 diseases, giving rise to a highly clustered disease association network. We observe that around 95% of the links in the disease network, though not identified by genetic overlap, are discovered by functional overlap. This disease network portraits rheumatoid arthritis, asthma, atherosclerosis, pulmonary diseases and Crohn's disease as hubs and thus pointing to common inflammatory processes underlying disease pathophysiology. We identify several described associations such as the inverse comorbidity relationship between Alzheimer's disease and neoplasms. Furthermore, we investigate the disruptions in protein interactions by mapping mutations onto the domains involved in the interaction, suggesting hypotheses on the causal link between diseases. Finally, we provide several proof-of-principle examples in which we model the effect of the mutation and the change of the association strength, which could explain the observed comorbidity between diseases caused by the same genetic alterations

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.

Correction to: 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales. Archives of Virology (2021) 166:3567–3579. https://doi.org/10.1007/s00705-021-05266-wIn March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.This work was supported in part through Laulima Government Solutions, LLC prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272201800013C. J.H.K. performed this work as an employee of Tunnell Government Services (TGS), a subcontractor of Laulima Government Solutions, LLC under Contract No. HHSN272201800013C. This work was also supported in part with federal funds from the National Cancer Institute (NCI), National Institutes of Health (NIH), under Contract No. 75N91019D00024, Task Order No. 75N91019F00130 to I.C., who was supported by the Clinical Monitoring Research Program Directorate, Frederick National Lab for Cancer Research. This work was also funded in part by Contract No. HSHQDC-15-C-00064 awarded by DHS S&T for the management and operation of The National Biodefense Analysis and Countermeasures Center, a federally funded research and development center operated by the Battelle National Biodefense Institute (V.W.); and NIH contract HHSN272201000040I/HHSN27200004/D04 and grant R24AI120942 (N.V., R.B.T.). S.S. acknowledges partial support from the Special Research Initiative of Mississippi Agricultural and Forestry Experiment Station (MAFES), Mississippi State University, and the National Institute of Food and Agriculture, US Department of Agriculture, Hatch Project 1021494. Part of this work was supported by the Francis Crick Institute which receives its core funding from Cancer Research UK (FC001030), the UK Medical Research Council (FC001030), and the Wellcome Trust (FC001030).S

2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.

In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV

The Soybean GmNARK Affects ABA and Salt Responses in Transgenic Arabidopsis thaliana

GmNARK (Glycine max nodule autoregulation receptor kinase) is the homolog of Arabidopsis thaliana CLAVATA1 (CLV1) and one of the most important regulators in the process of AON (Autoregulation of Nodulation), a process that restricts excessive nodule numbers in soybean. However, except for the function in AON, little is known about this gene. Here, we report that GmNARK plays important roles in process of plant response to abiotic stresses. Bioinformatic analysis and subcellular localization experiment results showed that GmNARK was a putative receptor like kinase and located at membrane. The promoter of GmNARK contains manifold cis regulatory elements that are responsive to hormone and stresses. Gene transcript expression pattern analysis in soybean revealed GmNARK was induced by ABA and NaCl treatment in both shoot and root. Overexpression of GmNARK in Arabidopsis resulted in higher sensitivity to ABA and salt treatment during seed germination and greening stages. We also checked the expression levels of some ABA response genes in the transgenic lines; the results showed that the transcript level of all the ABA response genes were much higher than that of wild type under ABA treatment. Our results revealed a novel role of GmNARK in response to abiotic stresses during plant growth and development