1,651 research outputs found

    Effects of composting manures and other organic wastes on soil processes and pest and disease interactions

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    Introduction Composts and manures are of major importance in providing fertility in organic farming systems, since synthetic fertilisers are prohibited. It is understood that composts have radically different nutrient release characteristics to those of uncomposted materials and manures, and it is believed that composting increases the beneficial effects of organic materials on soil health, soil quality, soil fertility and nutrient use efficiency. It has also been shown that some plant pests and diseases are suppressed through the application of composts and compost extracts to soils. There is considerable potential to use a wider range of feedstocks from on and off-farm sources and to improve the composting process and compost/manure application techniques. This review of scientific work to date was urgently required to help determine key research priorities to achieve this potential (Defra project OF0313). Project aims 1.To document the current standards, regulations and legislation relevant to recycling, compost/manure preparation and application and to review common UK practices relating to the preparation and application of uncomposted materials, manures, composts and compost extracts. 2. To review current scientific knowledge (from the literature) of the effects of different composting processes on chemical and biological parameters in the finished compost or compost extract. 3. To review (from the literature) the effects of uncomposted materials, manures and composts on soil health and quality, soil fertility and crop development and nutrition. 4. To review (from the literature) the effects of uncomposted materials, manures, composts and compost extracts on pest and disease incidence and severity in agricultural and horticultural crops. 5. To outline a proposed strategy for research which seeks to develop composting systems and compost/manure application protocols with a view to optimising soil fertility management and pest and disease control in organic agriculture and horticulture. Objective 1 - The current standards, regulations and legislation relevant to recycling, compost/manure preparation and application are documented in detail in the full report on Objective 1 (Appendix 2). Manures and uncomposted plant materials (e.g. green manures) are commonly used on UK organic farms. True composts (defined in the glossary, Appendix 1) are rarely prepared on UK organic farms, although there is increasing interest in their use, particularly on farms producing high value horticultural crops. An increasing number of companies are producing (or are interested in producing) composts suitable for use on organic farms as soil amendments or growing media. Objective 2 - The effects of different composting processes on chemical and biological parameters in the finished compost or compost extract are reviewed in detail in the full report on Objective 2 (Appendix 3). A short version of this review appears on pages 7-10 of this report. Objective 3 - The effects of uncomposted materials, manures and composts on soil health and quality, soil fertility and crop development and nutrition are reviewed in detail in the full report on Objective 3 (Appendix 4). A short version of this review appears on pages 10-13 of this report. Objective 4 - The effects of uncomposted materials, manures, composts and compost extracts on pest and disease incidence and severity in agricultural and horticultural crops are reviewed in detail in the full report on Objective 4 (Appendix 5). A short version of this review appears on pages 13-17 of this report. Objective 5 - A proposed strategy for research was outlined which seeks to develop composting systems and compost/manure application protocols with a view to optimising soil fertility management and pest/disease control in organic agriculture/horticulture Organic farming systems are by nature holistic. In other words, they function as a whole and all aspects of the system are interdependent on many other aspects of the system. It is essential therefore that research which is carried out to optimise the use of uncomposted plant residues, composts, manures and compost extracts is interdisciplinary; that is it must be carried out with reference to the organic farming system as a whole and not just a single aspect of it. Technology transfer and knowledge transfer are key elements to the proposed strategy for research. Seminars and conferences, farm walks, demonstration farms and a wide range of publishing formats must be used to ensure that end users have full access to the results of research carried out in the UK and abroad. The amount of information which is available for dissemination to those who wish to make or use composts will naturally depend on the amount of relevant research and development work which is going on in the UK, Europe and worldwide

    Chromosome looping at the human alpha-globin locus is mediated via the major upstream regulatory element (HS-40)

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    Previous studies in the mouse have shown that high levels of alpha-globin gene expression in late erythropoiesis depend on long-range, physical interactions between remote upstream regulatory elements and the globin promoters. Using quantitative chromosome conformation capture (q3C), we have now analyzed all interactions between 4 such elements lying 10 to 50 kb upstream of the human alpha cluster and their interactions with the alpha-globin promoter. All of these elements interact with the alpha-globin gene in an erythroid-specific manner. These results were confirmed in a mouse model of human alpha globin expression in which the human cluster replaces the mouse cluster in situ (humanized mouse). We have also shown that expression and all of the long-range interactions depend largely on just one of these elements; removal of the previously characterized major regulatory element (called HS -40) results in loss of all the interactions and alpha-globin expression. Reinsertion of this element at an ectopic location restores both expression and the intralocus interactions. In contrast to other more complex systems involving multiple upstream elements and promoters, analysis of the human alpha-globin cluster during erythropoiesis provides a simple and tractable model to understand the mechanisms underlying long-range gene regulation

    Runnin\u27 Wild / music by Harrington Harris; words by Joe Grey and Leo Wood

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    An Ebony Jazz Tune (Cover). Key of Bb. Cover: a caricature of a man running; [Back page missing]; Publisher: Leo Feist Inc. (New York); Also includes Dusting the Keys (J. Edward Killalea and Edward B. Claypoole) and River Shannon Moon (Walter Wallace Smith)https://egrove.olemiss.edu/sharris_d/1043/thumbnail.jp

    Identification of differentially methylated CpG Sites in fibroblasts from Keloid Scars

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    As a part of an abnormal healing process of dermal injuries and irritation, keloid scars arise on the skin as benign fibroproliferative tumors. Although the etiology of keloid scarring remains unsettled, considerable recent evidence suggested that keloidogenesis may be driven by epigenetic changes, particularly, DNA methylation. Therefore, genome-wide scanning of methylated cytosine-phosphoguanine (CpG) sites in extracted DNA from 12 keloid scar fibroblasts (KF) and 12 control skin fibroblasts (CF) (six normal skin fibroblasts and six normotrophic fibroblasts) was conducted using the Illumina Human Methylation 450K BeadChip in two replicates for each sample. Comparing KF and CF used a Linear Models for Microarray Data (Limma) model revealed 100,000 differentially methylated (DM) CpG sites, 20,695 of which were found to be hypomethylated and 79,305 were hypermethylated. The top DM CpG sites were associated with TNKS2, FAM45B, LOC723972, GAS7, RHBDD2 and CAMKK1. Subsequently, the most functionally enriched genes with the top 100 DM CpG sites were significantly (p ≀ 0.05) associated with SH2 domain binding, regulation of transcription, DNA-templated, nucleus, positive regulation of protein targeting to mitochondrion, nucleoplasm, Swr1 complex, histone exchange, and cellular response to organic substance. In addition, NLK, CAMKK1, LPAR2, CASP1, and NHS showed to be the most common regulators in the signaling network analysis. Taken together, these findings shed light on the methylation status of keloids that could be implicated in the underlying mechanism of keloid scars formation and remission

    Three-micron spectra of AGB stars and supergiants in nearby galaxies

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    The dependence of stellar molecular bands on the metallicity is studied using infrared L-band spectra of AGB stars (both carbon-rich and oxygen-rich) and M-type supergiants in the Large and Small Magellanic Clouds (LMC and SMC) and in the Sagittarius Dwarf Spheroidal Galaxy. The spectra cover SiO bands for oxygen-rich stars, and acetylene (C2H2), CH and HCN bands for carbon-rich AGB stars. The equivalent width of acetylene is found to be high even at low metallicity. The high C2H2 abundance can be explained with a high carbon-to-oxygen (C/O) ratio for lower metallicity carbon stars. In contrast, the HCN equivalent width is low: fewer than half of the extra-galactic carbon stars show the 3.5micron HCN band, and only a few LMC stars show high HCN equivalent width. HCN abundances are limited by both nitrogen and carbon elemental abundances. The amount of synthesized nitrogen depends on the initial mass, and stars with high luminosity (i.e. high initial mass) could have a high HCN abundance. CH bands are found in both the extra-galactic and Galactic carbon stars. None of the oxygen-rich LMC stars show SiO bands, except one possible detection in a low quality spectrum. The limits on the equivalent widths of the SiO bands are below the expectation of up to 30angstrom for LMC metallicity. Several possible explanations are discussed. The observations imply that LMC and SMC carbon stars could reach mass-loss rates as high as their Galactic counterparts, because there are more carbon atoms available and more carbonaceous dust can be formed. On the other hand, the lack of SiO suggests less dust and lower mass-loss rates in low-metallicity oxygen-rich stars. The effect on the ISM dust enrichment is discussed.Comment: accepted for A&

    VAChT overexpression increases acetylcholine at the synaptic cleft and accelerates aging of neuromuscular junctions

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    Background: Cholinergic dysfunction occurs during aging and in a variety of diseases, including amyotrophic lateral sclerosis (ALS). However, it remains unknown whether changes in cholinergic transmission contributes to age-and disease-related degeneration of the motor system. Here we investigated the effect of moderately increasing levels of synaptic acetylcholine (ACh) on the neuromuscular junction (NMJ), muscle fibers, and motor neurons during development and aging and in a mouse model for amyotrophic lateral sclerosis (ALS). Methods: Chat-ChR2-EYFP (VAChTHyp) mice containing multiple copies of the vesicular acetylcholine transporter (VAChT), mutant superoxide dismutase 1 (SOD1G93A), and Chat-IRES-Cre and tdTomato transgenic mice were used in this study. NMJs, muscle fibers, and a-motor neurons\u27 somata and their axons were examined using a light microscope. Transcripts for select genes in muscles and spinal cords were assessed using real-time quantitative PCR. Motor function tests were carried out using an inverted wire mesh and a rotarod. Electrophysiological recordings were collected to examine miniature endplate potentials (MEPP) in muscles. Results: We show that VAChT is elevated in the spinal cord and at NMJs of VAChTHyp mice. We also show that the amplitude of MEPPs is significantly higher in VAChTHyp muscles, indicating that more ACh is loaded into synaptic vesicles and released into the synaptic cleft at NMJs of VAChTHyp mice compared to control mice. While the development of NMJs was not affected in VAChTHyp mice, NMJs prematurely acquired age-related structural alterations in adult VAChTHyp mice. These structural changes at NMJs were accompanied by motor deficits in VAChTHyp mice. However, cellular features of muscle fibers and levels of molecules with critical functions at the NMJ and in muscle fibers were largely unchanged in VAChTHyp mice. In the SOD1G93A mouse model for ALS, increasing synaptic ACh accelerated degeneration of NMJs caused motor deficits and resulted in premature death specifically in male mice. Conclusions: The data presented in this manuscript demonstrate that increasing levels of ACh at the synaptic cleft promote degeneration of adult NMJs, contributing to age-and disease-related motor deficits. We thus propose that maintaining normal cholinergic signaling in muscles will slow degeneration of NMJs and attenuate loss of motor function caused by aging and neuromuscular diseases

    Lowering IceCube's energy threshold for point source searches in the Southern Sky

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    Observation of a point source of astrophysical neutrinos would be a "smoking gun" signature of a cosmic-ray accelerator. While IceCube has recently discovered a diffuse flux of astrophysical neutrinos, no localized point source has been observed. Previous IceCube searches for point sources in the southern sky were restricted by either an energy threshold above a few hundred TeV or poor neutrino angular resolution. Here we present a search for southern sky point sources with greatly improved sensitivities to neutrinos with energies below 100 TeV. By selecting charged-current Îœ ÎŒ interacting inside the detector, we reduce the atmospheric background while retaining efficiency for astrophysical neutrino-induced events reconstructed with sub-degree angular resolution. The new event sample covers three years of detector data and leads to a factor of 10 improvement in sensitivity to point sources emitting below 100 TeV in the southern sky. No statistically significant evidence of point sources was found, and upper limits are set on neutrino emission from individual sources. A posteriori analysis of the highest-energy (~100 TeV) starting event in the sample found that this event alone represents a 2.8σ deviation from the hypothesis that the data consists only of atmospheric background.Fil: Aartsen, M. G.. University of Adelaide; AustraliaFil: Abraham, K.. Technische UniversitĂ€t MĂŒnchen; AlemaniaFil: Ackermann, M.. Deutsches Elektronen-Synchrotron; AlemaniaFil: Adams, J.. University Of Canterbury; Nueva ZelandaFil: Aguilar, J. A.. UniversitĂ© Libre de Bruxelles; BĂ©lgicaFil: Golup, Geraldina Tamara. ComisiĂłn Nacional de EnergĂ­a AtĂłmica. Gerencia del Área de EnergĂ­a Nuclear. Instituto Balseiro; Argentina. Consejo Nacional de Investigaciones CientĂ­ficas y TĂ©cnicas. Centro CientĂ­fico TecnolĂłgico Conicet - Patagonia Norte; ArgentinaFil: Wallace, A.. University of Adelaide; AustraliaFil: Wallraff, M.. Rwth Aachen University; AlemaniaFil: Wandkowsky, N.. University of Wisconsin; Estados UnidosFil: Weaver, Ch.. University of Alberta; CanadĂĄFil: Wendt, C.. University of Wisconsin; Estados UnidosFil: Westerhoff, S.. University of Wisconsin; Estados UnidosFil: Whelan, B. J.. University of Adelaide; AustraliaFil: Whitehorn, N.. University of California at Berkeley; Estados UnidosFil: Wickmann, S.. Rwth Aachen University; AlemaniaFil: Wiebe, K.. Johannes Gutenberg Universitat Mainz; AlemaniaFil: Wiebusch, C. H.. Rwth Aachen University; AlemaniaFil: Wille, L.. University of Wisconsin; Estados UnidosFil: Williams, D. R.. University of Alabama at Birmingahm; Estados UnidosFil: Wills, L.. Drexel University; Estados UnidosFil: Wissing, H.. University of Maryland; Estados UnidosFil: Wolf, M.. Stockholms Universitet; SueciaFil: Wood, T. R.. University of Alberta; CanadĂĄFil: Woschnagg, K.. University of California at Berkeley; Estados UnidosFil: Xu, D. L.. University of Wisconsin; Estados UnidosFil: Xu, X. W.. Southern University; Estados UnidosFil: Xu, Y.. Stony Brook University; Estados UnidosFil: Yanez, J. P.. Deutsches Elektronen-Synchrotron; AlemaniaFil: Yodh, G.. University of California at Irvine; Estados UnidosFil: Yoshida, S.. Chiba University; JapĂłnFil: Zoll, M.. Stockholms Universitet; Sueci

    Near-IR spectroscopy of OH/IR stars in the Galactic Centre

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    Context. Galactic Centre (GC) OH/IR stars can be, based on the expansion velocities of their circumstellar shells, divided into two groups which are kinematically different and therefore are believed to have evolved from different stellar populations. Aims. To study the metallicity distribution of the OH/IR stars population in the GC on basis of a theoretical relation between EW(Na), EW(Ca) and EW(CO) and the metallicity. Methods. For 70 OH/IR stars in the GC, we obtained near-IR spectra. The equivalent line widths of NaI, CaI, 12CO(2,0) and the curvature of the spectrum around 1.6 micron due to water absorption are determined. Results. The near-IR spectrum of OH/IR stars is influenced by several physical processes. OH/IR stars are variable stars suffering high mass-loss rates. The dust that is formed around the stars strongly influences the near-IR spectra and reduces the equivalent line widths of NaI, CaI. A similar effect is caused by the water content in the outer atmosphere of the OH/IR star. Because of these effects, it is not possible with our low resolution near-infrared spectroscopy to determine the metallicities of these stars.Comment: 20 pages, 21 figures, accepted for publication in A&A on 18/04/200

    Evolution of a 3 \msun star from the main sequence to the ZZ Ceti stage: the role played by element diffusion

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    The purpose of this paper is to present new full evolutionary calculations for DA white dwarf stars with the major aim of providing a physically sound reference frame for exploring the pulsation properties of the resulting models in future communications. Here, white dwarf evolution is followed in a self-consistent way with the predictions of time dependent element diffusion and nuclear burning. In addition, full account is taken of the evolutionary stages prior to the white dwarf formation. In particular, we follow the evolution of a 3 \msun model from the zero-age main sequence (the adopted metallicity is Z=0.02) all the way from the stages of hydrogen and helium burning in the core up to the thermally pulsing phase. After experiencing 11 thermal pulses, the model is forced to evolve towards its white dwarf configuration by invoking strong mass loss episodes. Further evolution is followed down to the domain of the ZZ Ceti stars on the white dwarf cooling branch. Emphasis is placed on the evolution of the chemical abundance distribution due to diffusion processes and the role played by hydrogen burning during the white dwarf evolution. Furthermore, the implications of our evolutionary models for the main quantities relevant for adiabatic pulsation analysis are discussed. Interestingly, the shape of the Ledoux term is markedly smoother as compared with previous detailed studies of white dwarfs. This is translated into a different behaviour of the Brunt-Vaisala frequency.Comment: 11 pages, 11 figures, accepted for publication in MNRA
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