85 research outputs found
Pulsed extraction of ionization from helium buffer gas
The migration of intense ionization created in helium buffer gas under the
influence of applied electric fields is considered. First the chemical
evolution of the ionization created by fast heavy-ion beams is described.
Straight forward estimates of the lifetimes for charge exchange indicate a
clear suppression of charge exchange during ion migration in low pressure
helium. Then self-consistent calculations of the migration of the ions in the
electric field of a gas-filled cell at the National Superconducting Cyclotron
Laboratory (NSCL) using a Particle-In-Cell computer code are presented. The
results of the calculations are compared to measurements of the extracted ion
current caused by beam pulses injected into the NSCL gas cell.Comment: Accepted for pubilication in Nucl. Instrum. Meth. B, 14 pages, 8
figure
More pain, more gain: blocking the opoid system boosts adaptive cognitive control
Action Contro
Ergodicity, Decisions, and Partial Information
In the simplest sequential decision problem for an ergodic stochastic process
X, at each time n a decision u_n is made as a function of past observations
X_0,...,X_{n-1}, and a loss l(u_n,X_n) is incurred. In this setting, it is
known that one may choose (under a mild integrability assumption) a decision
strategy whose pathwise time-average loss is asymptotically smaller than that
of any other strategy. The corresponding problem in the case of partial
information proves to be much more delicate, however: if the process X is not
observable, but decisions must be based on the observation of a different
process Y, the existence of pathwise optimal strategies is not guaranteed.
The aim of this paper is to exhibit connections between pathwise optimal
strategies and notions from ergodic theory. The sequential decision problem is
developed in the general setting of an ergodic dynamical system (\Omega,B,P,T)
with partial information Y\subseteq B. The existence of pathwise optimal
strategies grounded in two basic properties: the conditional ergodic theory of
the dynamical system, and the complexity of the loss function. When the loss
function is not too complex, a general sufficient condition for the existence
of pathwise optimal strategies is that the dynamical system is a conditional
K-automorphism relative to the past observations \bigvee_n T^n Y. If the
conditional ergodicity assumption is strengthened, the complexity assumption
can be weakened. Several examples demonstrate the interplay between complexity
and ergodicity, which does not arise in the case of full information. Our
results also yield a decision-theoretic characterization of weak mixing in
ergodic theory, and establish pathwise optimality of ergodic nonlinear filters.Comment: 45 page
Random Mass Dirac Fermions in Doped Spin-Peierls and Spin-Ladder systems: One-Particle Properties and Boundary Effects
Quasi-one-dimensional spin-Peierls and spin-ladder systems are characterized
by a gap in the spin-excitation spectrum, which can be modeled at low energies
by that of Dirac fermions with a mass. In the presence of disorder these
systems can still be described by a Dirac fermion model, but with a random
mass. Some peculiar properties, like the Dyson singularity in the density of
states, are well known and attributed to creation of low-energy states due to
the disorder. We take one step further and study single-particle correlations
by means of Berezinskii's diagram technique. We find that, at low energy
, the single-particle Green function decays in real space like
. It follows that at these energies the
correlations in the disordered system are strong -- even stronger than in the
pure system without the gap. Additionally, we study the effects of boundaries
on the local density of states. We find that the latter is logarithmically (in
the energy) enhanced close to the boundary. This enhancement decays into the
bulk as and the density of states saturates to its bulk value on
the scale . This scale is different from
the Thouless localization length . We
also discuss some implications of these results for the spin systems and their
relation to the investigations based on real-space renormalization group
approach.Comment: 26 pages, LaTex, 9 PS figures include
Metastable States in Spin Glasses and Disordered Ferromagnets
We study analytically M-spin-flip stable states in disordered short-ranged
Ising models (spin glasses and ferromagnets) in all dimensions and for all M.
Our approach is primarily dynamical and is based on the convergence of a
zero-temperature dynamical process with flips of lattice animals up to size M
and starting from a deep quench, to a metastable limit. The results (rigorous
and nonrigorous, in infinite and finite volumes) concern many aspects of
metastable states: their numbers, basins of attraction, energy densities,
overlaps, remanent magnetizations and relations to thermodynamic states. For
example, we show that their overlap distribution is a delta-function at zero.
We also define a dynamics for M=infinity, which provides a potential tool for
investigating ground state structure.Comment: 34 pages (LaTeX); to appear in Physical Review
Nitric oxide and cyclic nucleotides: Their roles in junction dynamics and spermatogenesis
Spermatogenesis is a highly complicated process in which functional spermatozoa (haploid, 1n) are generated from primitive mitotic spermatogonia (diploid, 2n). This process involves the differentiation and transformation of several types of germ cells as spermatocytes and spermatids undergo meiosis and differentiation. Due to its sophistication and complexity, testis possesses intrinsic mechanisms to modulate and regulate different stages of germ cell development under the intimate and indirect cooperation with Sertoli and Leydig cells, respectively. Furthermore, developing germ cells must translocate from the basal to the apical (adluminal) compartment of the seminiferous epithelium. Thus, extensive junction restructuring must occur to assist germ cell movement. Within the seminiferous tubules, three principal types of junctions are found namely anchoring junctions, tight junctions, and gap junctions. Other less studied junctions are desmosome-like junctions and hemidesmosome junctions. With these varieties of junction types, testes are using different regulators to monitor junction turnover. Among the uncountable junction modulators, nitric oxide (NO) is a prominent candidate due to its versatility and extensive downstream network. NO is synthesized by nitric oxide synthase (NOS). Three traditional NOS, specified as endothelial NOS (eNOS), inducible NOS (iNOS), and neuronal NOS (nNOS), and one testis-specific nNOS (TnNOS) are found in the testis. For these, eNOS and iNOS were recently shown to have putative junction regulation properties. More important, these two NOSs likely rely on the downstream soluble guanylyl cyclase/cGMP/protein kinase G signaling pathway to regulate the structural components at the tight junctions and adherens junctions in the testes. Apart from the involvement in junction regulation, NOS/NO also participates in controlling the levels of cytokines and hormones in the testes. On the other hand, NO is playing a unique role in modulating germ cell viability and development, and indirectly acting on some aspects of male infertility and testicular pathological conditions. Thus, NOS/NO bears an irreplaceable role in maintaining the homeostasis of the microenvironment in the seminiferous epithelium via its different downstream signaling pathways
Identification of common genetic risk variants for autism spectrum disorder
Autism spectrum disorder (ASD) is a highly heritable and heterogeneous group of neurodevelopmental phenotypes diagnosed in more than 1% of children. Common genetic variants contribute substantially to ASD susceptibility, but to date no individual variants have been robustly associated with ASD. With a marked sample-size increase from a unique Danish population resource, we report a genome-wide association meta-analysis of 18,381 individuals with ASD and 27,969 controls that identified five genome-wide-significant loci. Leveraging GWAS results from three phenotypes with significantly overlapping genetic architectures (schizophrenia, major depression, and educational attainment), we identified seven additional loci shared with other traits at equally strict significance levels. Dissecting the polygenic architecture, we found both quantitative and qualitative polygenic heterogeneity across ASD subtypes. These results highlight biological insights, particularly relating to neuronal function and corticogenesis, and establish that GWAS performed at scale will be much more productive in the near term in ASD.Peer reviewe
Genome-wide by Environment Interaction Studies of Depressive Symptoms and Psychosocial Stress in UK Biobank and Generation Scotland
Stress is associated with poorer physical and mental health. To improve our understanding of this link, we performed genome-wide association studies (GWAS) of depressive symptoms and genome-wide by environment interaction studies (GWEIS) of depressive symptoms and stressful life events (SLE) in two UK population-based cohorts (Generation Scotland and UK Biobank). No SNP was individually significant in either GWAS, but gene-based tests identified six genes associated with depressive symptoms in UK Biobank (DCC, ACSS3, DRD2, STAG1, FOXP2 and KYNU; p < 2.77 x 10(-6)). Two SNPs with genome-wide significant GxE effects were identified by GWEIS in Generation Scotland: rs12789145 (53-kb downstream PIWIL4; p = 4.95 x 10(-9); total SLE) and rs17070072 (intronic to ZCCHC2; p = 1.46 x 10(-8); dependent SLE). A third locus upstream CYLC2 (rs12000047 and rs12005200, p < 2.00 x 10(-8); dependent SLE) when the joint effect of the SNP main and GxE effects was considered. GWEIS gene-based tests identified: MTNR1B with GxE effect with dependent SLE in Generation Scotland; and PHF2 with the joint effect in UK Biobank (p < 2.77 x 10(-6)). Polygenic risk scores (PRSs) analyses incorporating GxE effects improved the prediction of depressive symptom scores, when using weights derived from either the UK Biobank GWAS of depressive symptoms (p = 0.01) or the PGC GWAS of major depressive disorder (p = 5.91 x 10(-3)). Using an independent sample, PRS derived using GWEIS GxE effects provided evidence of shared aetiologies between depressive symptoms and schizotypal personality, heart disease and COPD. Further such studies are required and may result in improved treatments for depression and other stress-related conditions
Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns
Epigenetic processes, including DNA methylation (DNAm), are among the mechanisms allowing integration of genetic and environmental factors to shape cellular function. While many studies have investigated either environmental or genetic contributions to DNAm, few have assessed their integrated effects. Here we examine the relative contributions of prenatal environmental factors and genotype on DNA methylation in neonatal blood at variably methylated regions (VMRs) in 4 independent cohorts (overall n = 2365). We use Akaike’s information criterion to test which factors best explain variability of methylation in the cohort-specific VMRs: several prenatal environmental factors (E), genotypes in cis (G), or their additive (G + E) or interaction (GxE) effects. Genetic and environmental factors in combination best explain DNAm at the majority of VMRs. The CpGs best explained by either G, G + E or GxE are functionally distinct. The enrichment of genetic variants from GxE models in GWAS for complex disorders supports their importance for disease risk
Research and development of ion surfing RF carpets for the cyclotron gas stopper at the NSCL
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