Goal-oriented adaptivity using unconventional error representations for the multi-dimensional Helmholtz equation

In goal‐oriented adaptivity, the error in the quantity of interest is represented using the error functions of the direct and adjoint problems. This error representation is subsequently bounded above by element‐wise error indicators that are used to drive optimal refinements. In this work, we propose to replace, in the error representation, the adjoint problem by an alternative operator. The main advantage of the proposed approach is that, when judiciously selecting such alternative operator, the corresponding upper bound of the error representation becomes sharper, leading to a more efficient goal‐oriented adaptivity. While the method can be applied to a variety of problems, we focus here on two‐ and three‐dimensional (2‐D and 3‐D) Helmholtz problems. We show via extensive numerical experimentation that the upper bounds provided by the alternative error representations are sharper than the classical ones and lead to a more robust p‐adaptive process. We also provide guidelines for finding operators delivering sharp error representation upper bounds. We further extend the results to a convection‐dominated diffusion problem as well as to problems with discontinuous material coefficients. Finally, we consider a sonic logging‐while‐drilling problem to illustrate the applicability of the proposed method.V. Darrigrand, A. Rodriguez-Rozas and D. Pardo were partially funded by the Projects of the Spanish Ministry of Economy and Competitiveness with reference MTM2013-40824-P, MTM2016-76329-R (AEI/FEDER, EU), MTM2016-81697-ERC and the Basque Government Consolidated Research Group Grant IT649- 13 on “Mathematical Modeling, Simulation, and Industrial Applications (M2SI)”. A. Rodriguez-Rozas and D.Pardo were also partially funded by the BCAM “Severo Ochoa” accreditation of excellence SEV-2013-0323 and the Basque Government through the BERC2014-2017 program. A. Rodriguez-Rozas acknowledges support from Spanish Ministry under Grant No. FPDI- 2013-17098. I. Muga was partially funded by the FONDECYT project 1160774. The first four authors were also partially funded by the European Union’s Horizon 2020, research and innovation program under the Marie Sklodowska-Curie grant agreement No 644202. Serge Prudhomme is grateful for the support by a Discovery Grant from the Natural Sciences and Engineering Research Council of Canada

Ab initio study of the influence of nanoscale doping inhomogeneities in the phase separated state of La1−x_{1-x}Cax_{x}MnO3_3

The chemical influence in the phase separation phenomenon that occurs in perovskite manganites is discussed by means of ab initio calculations. Supercells have been used to simulate a phase separated state, that occurs at Ca concentrations close to the localized to itinerant crossover. We have first considered a model with two types of magnetic ordering coexisting within the same compound. This is not stable. However, a non-isotropic distribution of chemical dopants is found to be the ground state. This leads to regions in the system with different effective concentrations, that would always accompany the magnetic phase separation at the same nanometric scale, with hole-rich regions being more ferromagnetic in character and hole-poor regions being in the antiferromagnetic region of the phase diagram, as long as the system is close to a phase crossover.Comment: 8 pages, 7 figures, 1 tabl

Lower Devonian faunistic succession from the Obejo-Valsequillo-Puebla la Reina Domain (Ossa-Morena Zone, Spain); a preliminary multidisciplinary approach

Lack of adequately palaeontological studies, complex tectonics and discontinuous outcrops difficult the knowledge of the Devonian litho –and biostratigraphic sequence from the Obejo-Valsequillo-Puebla de la Reina Domain and prompted us to start a multidisciplinary study (conodonts, brachiopods, corals, stromatoporids, ostracods, dacryoconarids, fish remains, biofacies) of the region. Herein we present data from four sections (Peñón Cortado –PCR, Pozo del Rincón -PZR, Guadámez 2 –GUA 2 and Zújar –ZUJ) that allow the establishment of a preliminary time framework for further studies

Lessons learnt from a norovirus outbreak caused by bottled mineral water

Podeu consultar el III Workshop anual INSA-UB complet a: http://hdl.handle.net/2445/118993Sessió 1. Pòster 1

On the basic computational structure of gene regulatory networks

Gene regulatory networks constitute the first layer of the cellular computation for cell adaptation and surveillance. In these webs, a set of causal relations is built up from thousands of interactions between transcription factors and their target genes. The large size of these webs and their entangled nature make difficult to achieve a global view of their internal organisation. Here, this problem has been addressed through a comparative study for {\em Escherichia coli}, {\em Bacillus subtilis} and {\em Saccharomyces cerevisiae} gene regulatory networks. We extract the minimal core of causal relations, uncovering the hierarchical and modular organisation from a novel dynamical/causal perspective. Our results reveal a marked top-down hierarchy containing several small dynamical modules for \textit{E. coli} and \textit{B. subtilis}. Conversely, the yeast network displays a single but large dynamical module in the middle of a bow-tie structure. We found that these dynamical modules capture the relevant wiring among both common and organism-specific biological functions such as transcription initiation, metabolic control, signal transduction, response to stress, sporulation and cell cycle. Functional and topological results suggest that two fundamentally different forms of logic organisation may have evolved in bacteria and yeast.Comment: This article is published at Molecular Biosystems, Please cite as: Carlos Rodriguez-Caso, Bernat Corominas-Murtra and Ricard V. Sole. Mol. BioSyst., 2009, 5 pp 1617--171

Recent highlights and prospects on (n,γ\gamma) measurements at the CERN n_TOF facility

Neutron capture cross-section measurements are fundamental in the study of the slow neutron capture (s-) process of nucleosynthesis and for the development of innovative nuclear technologies. One of the best suited methods to measure radiative neutron capture (n,$\gamma$) cross sections over the full stellar range of interest for all the applications is the time-of-flight (TOF) technique. Overcoming the current experimental limitations for TOF measurements, in particular on low mass unstable samples, requires the combination of facilities with high instantaneous flux, such as the CERN n_TOF facility, with detection systems with an enhanced detection sensitivity and high counting rate capabilities. This contribution presents a summary about the recent highlights in the field of (n,$\gamma$) measurements at n_TOF. The recent upgrades in the facility and in new detector concepts for (n,\g) measurements are described. Last, an overview is given on the existing limitations and prospects for TOF measurements involving unstable targets and the outlook for activation measurements at the brand new high-flux n_TOF-NEAR station.Comment: 7 pages, 5 figures (8 panels). Proceedings of the CGS-17 conference. To be published in EPJ Web of Conference

Impaired autophagic flux is associated with increased endoplasmic reticulum stress during the development of NAFLD

This work is licensed under a Creative Commons Attribution-NonCommercialNoDerivs 3.0 Unported License.-- et al.The pathogenic mechanisms underlying the progression of non-alcoholic fatty liver disease (NAFLD) are not fully understood. In this study, we aimed to assess the relationship between endoplasmic reticulum (ER) stress and autophagy in human and mouse hepatocytes during NAFLD. ER stress and autophagy markers were analyzed in livers from patients with biopsy-proven non-alcoholic steatosis (NAS) or non-alcoholic steatohepatitis (NASH) compared with livers from subjects with histologically normal liver, in livers from mice fed with chow diet (CHD) compared with mice fed with high fat diet (HFD) or methionine-choline-deficient (MCD) diet and in primary and Huh7 human hepatocytes loaded with palmitic acid (PA). In NASH patients, significant increases in hepatic messenger RNA levels of markers of ER stress (activating transcription factor 4 (ATF4), glucose-regulated protein 78 (GRP78) and C/EBP homologous protein (CHOP)) and autophagy (BCN1) were found compared with NAS patients. Likewise, protein levels of GRP78, CHOP and p62/SQSTM1 (p62) autophagic substrate were significantly elevated in NASH compared with NAS patients. In livers from mice fed with HFD or MCD, ER stress-mediated signaling was parallel to the blockade of the autophagic flux assessed by increases in p62, microtubule-associated protein 2 light chain 3 (LC3-II)/LC3-I ratio and accumulation of autophagosomes compared with CHD fed mice. In Huh7 hepatic cells, treatment with PA for 8 h triggered activation of both unfolding protein response and the autophagic flux. Conversely, prolonged treatment with PA (24 h) induced ER stress and cell death together with a blockade of the autophagic flux. Under these conditions, cotreatment with rapamycin or CHOP silencing ameliorated these effects and decreased apoptosis. Our results demonstrated that the autophagic flux is impaired in the liver from both NAFLD patients and murine models of NAFLD, as well as in lipid-overloaded human hepatocytes, and it could be due to elevated ER stress leading to apoptosis. Consequently, therapies aimed to restore the autophagic flux might attenuate or prevent the progression of NAFLD.We acknowledge the following grant support: SAF2012-33283 (MINECO, Spain), Comunidad de Madrid S2010/BMD-2423, EFSD and Amylin Paul Langerhans Grant and Centro de Investigación Biomédica en Red de Diabetes y Enfermedades Metabólicas Asociadas (CIBERDEM, ISCIII, Barcelona, Spain) to AMV.; SAF2010-16037, SAF2013-43713-R (MINECO) and Centro de Investigación Biomédica en Red de Enfermedades Hepáticas y Digestivas (CIBEREHD, ISCIII) to PMS. RD12/0042/0019 (ISCIII) and S2010/BMD-2478 (Comunidad de Madrid) to LB, PI 13/01299 and Fundación Mutua Madrileña 2012 to C G-M and AIRC IG-2012 to GMF.Peer Reviewe