Gendered Paths to Formal and Informal Resources in Post-Disaster Development in the Ecuadorian Andes

The devastating eruptions of Mount Tungurahua in the Ecuadorian highlands in 1999 and 2006 left many communities struggling to rebuild their homes and others permanently displaced to settlements built by state and nongovernmental organizations. For several years afterward, households diversified their economic strategies to compensate for losses, communities organized to promote local development, and the state and nongovernmental organizations sponsored many economic recovery programs in the affected communities. Our study examined the ways in which gender and gender roles were associated with different levels and paths of access to scarce resources in these communities. Specifically, this article contrasts the experiences of men and women in accessing household necessities and project assistance through formal institutions and informal networks. We found that women and men used different types of informal social support networks, with men receiving significantly more material, emotional, and informational support than women. We also found that men and women experienced different challenges and advantages when pursuing support through local and extralocal institutions and that these institutions often coordinated in ways that reified their biases. We present a methodology that is replicable in a wide variety of disaster, resettlement, and development settings, and we advocate an inductive, evidence-based approach to policy, built upon an understanding of local gender, class, and ethnic dynamics affecting access to formal and informal resources. This evidence should be used to build more robust local institutions that can resist wider social and cultural pressures for male dominance and gendered exclusion

Third sector organizations and earthquake recovery planning in Christchurch, New Zealand

On September 4, 2010, an earthquake struck rural Canterbury and the most deadly of over 2,000 aftershocks devastated the Christchurch Central Business District on February 22, 2011 (Ardagh et al. 2012). Questions have arisen regarding population dynamics (Love 2011), marginalized groups, health and social care, and overall recovery efforts. Addressing some of these concerns are various non-profit, non-governmental, and faith based groups, collectively referred to as Third Sector Organizations (TSOs). By providing an alternative to and back-stopping government and private health and social services, TSOs are able to build resiliency following a natural disaster, and are especially able to identify and address unmet needs within their target audiences and maintain a sense of community within their operating areas. The nature of community recovery, also changes the role of TSOs in formal and grassroots efforts over time. In New Zealand, TSOs have shared community health burdens with government and private practices since the 1990s (Larner and Craig 2005) and have championed healthcare policy measures for ethnic minorities (Came 2014). Nevertheless, the earthquakes have presented challenges to TSOs. An inventory of 92 TSOs four months after the earthquakes, 106 one year after, and 454 two years after by Carlton and Vallance (2013) shows that although many TSOs have emerged to address earthquake related issues, other TSOs may have been unable to re-establish themselves outside areas with earthquake damage found to be too severe to inhabit by the Canterbury Earthquake Recovery Authority (CERA). Others reported “burn-out” and 52 were inactive or closed because of shifting needs during recovery. This research identifies shared experiences across the third sector in Canterbury to illuminate shifting roles in mid to long-term earthquake recovery

Cascadia Fore Arc Seismic Survey: Open-Access Data Available

The Cascadia subduction zone (CSZ), where the Juan de Fuca and Gorda plates subduct obliquely beneath North America at a rate of about 35 millimeters per year, poses major geological hazards to population centers of the northwestern United States. Despite the importance of the subducting slab in these hazards, the plate boundary is poorly mapped and understood, especially offshore

Phloem connectivity and transport are not involved in mature plant resistance (MPR) to Potato Virus Y in different potato cultivars, and MPR does not protect tubers from recombinant strains of the virus

This research was funded by UK Research and Innovation (BBSRC Grant # BB/L011840/1; Ecology and Epidemiology of Infectious Diseases), by the Scottish Government's Rural and Environment Science and Analytical Services (RESAS) Division, and by the James Hutton Institute.The aims of this study were: i) to investigate mature plant resistance (MPR) against four strains of Potato virus Y (PVYO, PVYN, PVYNTN and PVYN−Wi) in potato cultivars that differ in maturity (e.g. early or maincrop) at different developmental stages, and ii) to determine whether phloem translocation of photoassimilates at different stages including the source-sink transition influences MPR. The data showed that MPR was functional by the flowering stage in all cultivars, and that the host-pathogen interaction is highly complex, with all three variables (potato cultivar, virus strain and developmental stage of infection) having a significant effect on the outcome. However, virus strain was the most important factor, and MPR was less effective in protecting tubers from recombinant virus strains (PVYNTN and PVYN−Wi). Development of MPR was unrelated to foliar phloem connectivity, which was observed at all developmental stages, but a switch from symplastic to apoplastic phloem unloading early in tuber development may be involved in the prevention of tuber infections with PVYO. Recombinant virus strains were more infectious than parental strains and PVYNTN has a more effective silencing suppressor than PVYO, another factor that may contribute to the efficiency of MPR. The resistance conferred by MPR against PVYO or PVYN may be associated with or enhanced by the presence of the corresponding strain-specific HR resistance gene in the cultivar.Publisher PDFPeer reviewe

The genetics of cardiovascular disease

Recent advances in genotyping technology and insights into disease mechanisms have increased interest in the genetics of cardiovascular disease. Several candidate genes involved in cardiovascular diseases were identified from studies using animal models, and the translation of these findings to human disease is an exciting challenge. There is a trend towards large-scale genome-wide association studies that are subject to strict quality criteria with regard to both genotyping and phenotyping. Here, we review some of the strategies that have been developed to translate findings from experimental models to human disease and outline the need for optimizing global approaches to analyze such results. Findings from ongoing studies are interpreted in the context of disease pathways instead of the more traditional focus on single genetic variants

Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics

BACKGROUND: Growing interest in cellulolytic clostridia with potential for consolidated biofuels production is mitigated by low conversion of raw substrates to desired end products. Strategies to improve conversion are likely to benefit from emerging techniques to define molecular systems biology of these organisms. Clostridium stercorarium DSM8532(T) is an anaerobic thermophile with demonstrated high ethanol production on cellulose and hemicellulose. Although several lignocellulolytic enzymes in this organism have been well-characterized, details concerning carbohydrate transporters and central metabolism have not been described. Therefore, the goal of this study is to define an improved whole genome sequence (WGS) for this organism using in-depth molecular profiling by RNA-seq transcriptomics and tandem mass spectrometry-based proteomics. RESULTS: A paired-end Roche/454 WGS assembly was closed through application of an in silico algorithm designed to resolve repetitive sequence regions, resulting in a circular replicon with one gap and a region of 2 kilobases with 10 ambiguous bases. RNA-seq transcriptomics resulted in nearly complete coverage of the genome, identifying errors in homopolymer length attributable to 454 sequencing. Peptide sequences resulting from high-throughput tandem mass spectrometry of trypsin-digested protein extracts were mapped to 1,755 annotated proteins (68% of all protein-coding regions). Proteogenomic analysis confirmed the quality of annotation and improvement pipelines, identifying a missing gene and an alternative reading frame. Peptide coverage of genes hypothetically involved in substrate hydrolysis, transport and utilization confirmed multiple pathways for glycolysis, pyruvate conversion and recycling of intermediates. No sequences homologous to transaldolase, a central enzyme in the pentose phosphate pathway, were observed by any method, despite demonstrated growth of this organism on xylose and xylan hemicellulose. CONCLUSIONS: Complementary omics techniques confirm the quality of genome sequence assembly, annotation and error-reporting. Nearly complete genome coverage by RNA-seq likely indicates background DNA in RNA extracts, however these preps resulted in WGS enhancement and transcriptome profiling in a single Illumina run. No detection of transaldolase by any method despite xylose utilization by this organism indicates an alternative pathway for sedoheptulose-7-phosphate degradation. This report combines next-generation omics techniques to elucidate previously undefined features of substrate transport and central metabolism for this organism and its potential for consolidated biofuels production from lignocellulose. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/1471-2164-15-567) contains supplementary material, which is available to authorized users

Controls on the diurnal streamflow cycles in two subbasins of an alpine headwater catchment

In high-altitude alpine catchments, diurnal streamflow cycles are typically dominated by snowmelt or ice melt. Evapotranspiration-induced diurnal streamflow cycles are less observed in these catchments but might happen simultaneously. During a field campaign in the summer 2012 in an alpine catchment in the Swiss Alps (Val Ferret catchment, 20.4 km2, glaciarized area: 2%), we observed a transition in the early season from a snowmelt to an evapotranspiration-induced diurnal streamflow cycle in one of two monitored subbasins. The two different cycles were of comparable amplitudes and the transition happened within a time span of several days. In the second monitored subbasin, we observed an ice melt-dominated diurnal cycle during the entire season due to the presence of a small glacier. Comparisons between ice melt and evapotranspiration cycles showed that the two processes were happening at the same times of day but with a different sign and a different shape. The amplitude of the ice melt cycle decreased exponentially during the season and was larger than the amplitude of the evapotranspiration cycle which was relatively constant during the season. Our study suggests that an evapotranspiration-dominated diurnal streamflow cycle could damp the ice melt-dominated diurnal streamflow cycle. The two types of diurnal streamflow cycles were separated using a method based on the identification of the active riparian area and measurement of evapotranspiration