Computation of Scanning Tunneling Microscope Images of Nanometer-Sized Objects Physisorbed on Metal Surfaces

This communication deals with the application of a transfer-matrix strategy for the quantitative evaluation of the tunnel current in a scanning tunneling microscope (STM). The image given by a simple atomic-size object deposited on a metal surface is specifically examined in both modes of STM operation namely the constant-height and the constant-current modes. The two-dimensional corrugation induced at low temperature by Xe atoms physisorbed on an otherwise clean, unreconstructed Ni (110) surface is studied in detail. It is shown that the simple consideration of the elastic scattering of electrons by the three-dimensional potential barrier between the tip and the metal substrates provides a quantitative description of the images produced by the instrument: (1) the Xe atom appears as a conic protrusion, approximately 7 A wide, with a corrugation 1.3 A high; (2) in Xe clusters, each adjoining atom is resolved, with a shape in full agreement with experiment. In order to obtain correct quantitative results, image-charge corrections to the potential cannot be neglected

Molecular Emission Line Formation in Prestellar Cores

We investigate general aspects of molecular line formation under conditions which are typical of prestellar cores. Focusing on simple linear molecules, we study formation of their rotational lines by radiative transfer simulations. We present a thermalization diagram to show the effects of collisions and radiation on the level excitation. We construct a detailed scheme (contribution chart) to illustrate the formation of emission line profiles. This chart can be used as an efficient tool to identify which parts of the cloud contribute to a specific line profile. We show how molecular line characteristics for uniform model clouds depend on hydrogen density, molecular column density, and kinetic temperature. The results are presented in a 2D plane to illustrate cooperative effects of the physical factors. We also use a core model with a non-uniform density distribution and chemical stratification to study the effects of cloud contraction and rotation on spectral line maps. We discuss the main issues that should be taken into account when dealing with interpretation and simulation of observed molecular lines.Comment: Accepted for publication in Ap

Lisht as a New Kingdom glass-making site with its own chemical signature

Lisht is one of a few New Kingdom sites with known glass-working debris. Here, we present evidence for the primary production of glass at Lisht, including crucible fragments and semi-finished glass. We also provide 12 new chemical analyses of glass from Lisht, including trace elements. We argue that the glass made at Lisht has a specific chemical signature within the broader range of Late Bronze Age glass compositions from Egypt, further underlining the former existence of primary glass production there and offering the possibility of identifying Lisht-made glass elsewhere in Egypt and beyond

Molecular line radiative transfer in protoplanetary disks: Monte Carlo simulations versus approximate methods

We analyze the line radiative transfer in protoplanetary disks using several approximate methods and a well-tested Accelerated Monte Carlo code. A low-mass flaring disk model with uniform as well as stratified molecular abundances is adopted. Radiative transfer in low and high rotational lines of CO, C18O, HCO+, DCO+, HCN, CS, and H2CO is simulated. The corresponding excitation temperatures, synthetic spectra, and channel maps are derived and compared to the results of the Monte Carlo calculations. A simple scheme that describes the conditions of the line excitation for a chosen molecular transition is elaborated. We find that the simple LTE approach can safely be applied for the low molecular transitions only, while it significantly overestimates the intensities of the upper lines. In contrast, the Full Escape Probability (FEP) approximation can safely be used for the upper transitions (J_{\rm up} \ga 3) but it is not appropriate for the lowest transitions because of the maser effect. In general, the molecular lines in protoplanetary disks are partly subthermally excited and require more sophisticated approximate line radiative transfer methods. We analyze a number of approximate methods, namely, LVG, VEP (Vertical Escape Probability) and VOR (Vertical One Ray) and discuss their algorithms in detail. In addition, two modifications to the canonical Monte Carlo algorithm that allow a significant speed up of the line radiative transfer modeling in rotating configurations by a factor of 10--50 are described.Comment: 47 pages, 12 figures, accepted for publication in Ap

High-resolution polarimetry of Parsamian 21: revealing the structure of an edge-on FU Ori disc

We present the first high spatial resolution near-infrared direct and polarimetric observations of Parsamian 21, obtained with the VLT/NACO instrument. We complemented these measurements with archival infrared observations, such as HST/WFPC2 imaging, HST/NICMOS polarimetry, Spitzer IRAC and MIPS photometry, Spitzer IRS spectroscopy as well as ISO photometry. Our main conclusions are the following: (1) we argue that Parsamian 21 is probably an FU Orionis-type object; (2) Parsamian 21 is not associated with any rich cluster of young stars; (3) our measurements reveal a circumstellar envelope, a polar cavity and an edge-on disc; the disc seems to be geometrically flat and extends from approximately 48 to 360 AU from the star; (4) the SED can be reproduced with a simple model of a circumstellar disc and an envelope; (5) within the framework of an evolutionary sequence of FUors proposed by Green et al. (2006) and Quanz et al. (2007), Parsamian 21 can be classified as an intermediate-aged object.Comment: Accepted for publication in the MNRAS. 16 pages, 18 figures and 5 table

UV Circular Polarisation in Star Formation Regions : The Origin of Homochirality?

Ultraviolet circularly polarised light has been suggested as the initial cause of the homochirality of organic molecules in terrestrial organisms, via enantiomeric selection of prebiotic molecules by asymmetric photolysis. We present a theoretical investigation of mechanisms by which ultraviolet circular polarisation may be produced in star formation regions. In the scenarios considered here, light scattering produces only a small percentage of net circular polarisation at any point in space, due to the forward throwing nature of the phase function in the ultraviolet. By contrast, dichroic extinction can produce a fairly high percentage of net circular polarisation (∼10%) and may therefore play a key role in producing an enantiomeric excessPeer reviewe

Radio and X-ray variability of Young Stellar Objects in the Coronet Cluster

The Coronet Cluster in the nearby R CrA dark cloud offers the rare opportunity to study at least four "class I" protostellar sources as well as one candidate "class 0" source, a Herbig Ae star, and a candidate brown dwarf within a few square arcminutes - most of them detected at radio- and X-ray wavelengths. These sources were observed with the Very Large Array (VLA) at 3.5cm on nine occasions in 1998, spread over nearly four months. The source IRS 5, earlier shown to emit circularly polarized radio emission, was observed to undergo a flux increase accompanied by changes in its polarization properties. Comparison with VLA measurements taken in January 1997 allows for some analysis of longer-term variability. In addition to this radio monitoring, we analyze archival Chandra and XMM-Newton X-ray data of these sources. Three class I protostars are bright enough for X-ray spectroscopy, and we perform a variability analysis for these sources, covering a total of 154 ksec spread over more than two and a half years. Also in X-rays, IRS 5 shows the most pronounced variability, whilst the other two class I protostars IRS 1 and IRS 2 have more stable emission. X-ray data is also analyzed for the recently identified candidate class 0 source IRS 7E, which shows strong variability as well as for the Herbig Ae star R CrA for which we find extremely hot X-ray-emitting plasma. For IRS 1,2 and 5, the hydrogen column densities derived from the X-ray spectra are at about half the values derived with near-infrared techniques, a situation similar to what has been observed towards some other young stellar objects.Comment: 17 pages, 11 figures, accepted for publication in A&

The T Tauri star RY Tau as a case study of the inner regions of circumstellar dust disks

We study the inner region of the circumstellar disk around the TTauri star RY Tau. Our aim is to find a physical description satisfying the available interferometric data, obtained with the mid-infrared interferometric instrument at the Very Large Telescope Interferometer, as well as the spectral energy distribution. We also compare the findings with the results of similar studies, including those of intermediate-mass stars. Our analysis is done within the framework of a passive circumstellar disk, which is optionally supplemented by the effects of accretion and an added envelope. To achieve a more consistent and realistic model, we used our continuum transfer code MC3D. In addition, we studied the shape of the 10um silicate emission feature in terms of the underlying dust population, both for single-dish and for interferometric measurements. We show that a modestly flaring disk model with accretion can explain both the observed spectral energy distribution and the mid-infrared visibilities obtained with the mid-infrared infrared instrument. We found an interesting ambiguity: a circumstellar active disk model with an added envelope, and a lower accretion rate than in the active disk model without envelope, could represent the observations equally as well. This type of model with the envelope should be considered a viable alternative in future models of other TTauri stars. The approach of a disk with a puffed-up inner rim wall and the influence of a stellar companion is also discussed. From the study of the silicate emission feature we see evidence for dust evolution in a TTauri star, with a decreasing fraction of small amorphous and an increasing fraction of crystalline particles closer to the star.Comment: 19 pages, 23 figures; accepted by Astronomy & Astrophysic

Landowning, Status and Population Growth

This paper considers the effects of the landowning and land reforms on economic and demographic growth by a family-optimization model with endogenous fertility and status-seeking. A land reform provides the peasant with strong incentives to limit their family size and to improve the productivity of the land. Even though the income effect due to the land reform tends to raise fertility, a strong enough status-effect outweighs it, thus generating a decrease in population growth. The European demographic history provides supporting anecdotal evidence for this theoretical result

Integrating transposable elements in the 3D genome

Chromosome organisation is increasingly recognised as an essential component of genome regulation, cell fate and cell health. Within the realm of transposable elements (TEs) however, the spatial information of how genomes are folded is still only rarely integrated in experimental studies or accounted for in modelling. Whilst polymer physics is recognised as an important tool to understand the mechanisms of genome folding, in this commentary we discuss its potential applicability to aspects of TE biology. Based on recent works on the relationship between genome organisation and TE integration, we argue that existing polymer models may be extended to create a predictive framework for the study of TE integration patterns. We suggest that these models may offer orthogonal and generic insights into the integration profiles (or "topography") of TEs across organisms. In addition, we provide simple polymer physics arguments and preliminary molecular dynamics simulations of TEs inserting into heterogeneously flexible polymers. By considering this simple model, we show how polymer folding and local flexibility may generically affect TE integration patterns. The preliminary discussion reported in this commentary is aimed to lay the foundations for a large-scale analysis of TE integration dynamics and topography as a function of the three-dimensional host genome