Science with the Virtual Observatory: the AstroGrid VO Desktop

We introduce a general range of science drivers for using the Virtual Observatory (VO) and identify some common aspects to these as well as the advantages of VO data access. We then illustrate the use of existing VO tools to tackle multi wavelength science problems. We demonstrate the ease of multi mission data access using the VOExplorer resource browser, as provided by AstroGrid (http://www.astrogrid.org) and show how to pass the various results into any VO enabled tool such as TopCat for catalogue correlation. VOExplorer offers a powerful data-centric visualisation for browsing and filtering the entire VO registry using an iTunes type interface. This allows the user to bookmark their own personalised lists of resources and to run tasks on the selected resources as desired. We introduce an example of how more advanced querying can be performed to access existing X-ray cluster of galaxies catalogues and then select extended only X-ray sources as candidate clusters of galaxies in the 2XMMi catalogue. Finally we introduce scripted access to VO resources using python with AstroGrid and demonstrate how the user can pass on the results of such a search and correlate with e.g. optical datasets such as Sloan. Hence we illustrate the power of enabling large scale data mining of multi wavelength resources in an easily reproducible way using the VO.Comment: 8 pages; 7 figures; proceedings of invited talk at "Multi wavelength astronomy and the Virtual Observatory" conference, December 2008, EuroVO-AIDA program, European Space Astronomy Centre, Spai

Shocked H2 and Fe+ Dynamics in the Orion Bullets

Observations of H2 velocity profiles in the two most clearly defined Orion bullets are extremely difficult to reconcile with existing steady-state shock models. We have observed [FeII] 1.644um velocity profiles of selected bullets and H2 1-0 S(1) 2.122um velocity profiles for a series of positions along and across the corresponding bow-shaped shock fronts driven into the surrounding molecular cloud. Integrated [FeII] velocity profiles of the brightest bullets are consistent with theoretical bow shock predictions. However, observations of broad, singly-peaked H2 1-0 S(1) profiles at a range of positions within the most clearly resolved bullet wakes are not consistent with molecular shock modelling. A uniform, collisionally broadened background component which pervades the region in both tracers is inconsistent with fluorescence due to the ionizing radiation of the Trapezium stars alone.Comment: 20 pages including 18 figures, published in MNRA

SCIENCE WITH VO TOOLS: THE ASTROGRID VO DESKTOP

ABSTRACT We introduce a general range of science drivers for using the Virtual Observatory (VO) and identify some common aspects to these as well as the advantages of VO data access. We then illustrate the use of existing VO tools to tackle multi wavelength science problems. We demonstrate the ease of multi mission data access using the VOExplorer resource browser, as provided by AstroGrid (http://www.astrogrid.org) and show how to pass the various results into any VO enabled tool such as TopCat for catalogue correlation. VOExplorer offers a powerful data-centric visualisation for browsing and filtering the entire VO registry using an iTunes type interface. This allows the user to bookmark their own personalised lists of resources and to run tasks on the selected resources as desired. We introduce an example of how more advanced querying can be performed to access existing X-ray cluster of galaxies catalogues and then select extended only X-ray sources as candidate clusters of galaxies in the 2XMMi catalogue. Finally we introduce scripted access to VO resources using python with AstroGrid and demonstrate how the user can pass on the results of such a search and correlate with e.g. optical datasets such as Sloan. Hence we illustrate the power of enabling large scale data mining of multi wavelength resources in an easily reproducible way using the VO

Basic Income Simulations for the Province of British Columbia

An important component of the work to be completed by the British Columbia’s Expert Panel on Basic Income is to design simulations to look at how various basic income (BI) models could work in B.C. (B.C. Poverty Reduction, 2018). The intent of these simulations is to identify the potential impacts and financial implications for B.C. residents of different variants of a BI. Given the poverty reduction targets passed by the B.C. government, detailed in Petit and Tedds (2020d), the potential impacts include those on the incidence and the depths of poverty in the province (B.C. Poverty Reduction, n.d.). The panel ran over 16,000 different BI scenarios to consider in B.C., which were modelled using Statistics Canada’s Social Policy Simulation Database and Model (SPSD/M) program. We evaluate different BI scenarios in terms of their implications for a variety of measures, including cost, number of recipients, rates of poverty, depths of poverty, distributional affects, and inequality impacts. This paper provides details regarding these simulations. Our goal in this paper is simply to consider different versions of a basic income in terms of both their cost implications and their implications for poverty reduction. We believe that identifying the most effective variants of a basic income in terms of these two criteria will help sharpen the conversation about the applicability of a basic income as a policy option for B.C

The XMM-Newton wide angle survey (XWAS): the X-ray spectrum of type-1 AGN

Aims. We discuss the broad band X-ray properties of one of the largest samples of X-ray selected type-1 AGN to date (487 objects in total), drawn from the XMM-Newton Wide Angle Survey (XWAS). The objects presented in this work cover 2−10 keV (rest-frame) luminosities from ∼1042−1045 erg s−1 and are detected up to redshift ∼4. We constrain the overall properties of the broad band continuum, soft excess and X-ray absorption, along with their dependence on the X-ray luminosity and redshift.We discuss the implications for models of AGN emission. Methods. We fitted the observed 0.2−12 keV broad band spectra with various models to search for X-ray absorption and soft excess. The F-test was used with a significance threshold of 99% to statistically accept the detection of additional spectral components. Results. We constrained the mean spectral index of the broad band X-ray continuum to (Γ) = 1.96 ± 0.02 with intrinsic dispersion σ(Γ) = 0.27+0.01 −0.02. The continuum becomes harder at faint fluxes and at higher redshifts and hard (2−10 keV) luminosities. The dependence of Γ with flux is likely due to undetected absorption rather than to spectral variation. We found a strong dependence of the detection efficiency of objects on the spectral shape. We expect this effect to have an impact on the measured mean continuum shapes of sources at different redshifts and luminosities. We detected excess absorption in >∼3% of our objects, with rest-frame column densities ∼a few ×1022 cm−2. The apparent mismatch between the optical classification and X-ray properties of these objects is a challenge for the standard orientation-based AGN unification model. We found that the fraction of objects with detected soft excess is ∼36%. Using a thermal model, we constrained the soft excess mean rest-frame temperature and intrinsic dispersion to kT ∼ 100 eV and σkT ∼ 34 eV. The origin of the soft excess as thermal emission from the accretion disk or Compton scattered disk emission is ruled out on the basis of the temperatures detected and the lack of correlation of the soft excess temperature with the hard X-ray luminosity over more than 2 orders of magnitude in luminosity. Furthermore, the high luminosities of the soft excess rule out an origin in the host galaxy.We acknowledge Chris Done, Bozena Czerny, Gordon Stewart, Pilar Esquej and Ken Pounds for useful comments. We acknowledge the anonymous referee for a careful reading of the manuscript and for comments that improved the paper. S.M., M.W. and J.A.T. acknowledge support from the UK STFC research council. F.J.C. acknowledges financial support for this work from the Spanish Ministerio de Educación y Ciencia under project ESP2006-13608-C02-01. A.C. acknowledges financial support from the Spanish Ministerio de Educación y Ciencia fellowship and also from the MIUR and The Italian Space Agency (ASI) grants PRIN-MUR 2006-02-5203 and No. I/088/06/0. M.K. acknowledges support from the NASA grant NNX08AX50G and NNX07AG02G

The X-ray source content of the XMM-Newton Galactic plane survey

We report the results of an optical campaign carried out by the XMM-Newton Survey Science Centre with the specific goal of identifying the brightest X-ray sources in the XMM-Newton Galactic plane survey. In addition to photometric and spectroscopic observations obtained at the ESO-VLT and ESO-3.6 m, we used cross-correlations with the 2XMMi, USNO-B1.0, MASS, and GLIMPSE catalogues to advance the identification process. Active coronae account for 16 of the 30 positively or tentatively identified X-ray sources and exhibit the softest X-ray spectra. Many of the identified hard X-ray sources are associated with massive stars, possible members of binary systems and emitting at intermediate X-ray luminosities of 1032−34 erg s−1. Among these are (i) a very absorbed, likely hyper-luminous star with X-ray/optical spectra and luminosities comparable to those of η Carina; (ii) a new X-rayselected WN8 Wolf-Rayet star in which most of the X-ray emission probably arises from wind collision in a binary; (iii) a new Be/X-ray star belonging to the growing class of γ-Cas analogues; and (iv) a possible supergiant X-ray binary of the kind discovered recently by INTEGRAL. One of the sources, XGPS-25, has a counterpart of moderate optical luminosity that exhibits HeII λ4686 and Bowen CIII-NIII emission lines, suggesting that this may be a quiescent or X-ray shielded low mass X-ray binary, although its X-ray properties might also be consistent with a rare kind of cataclysmic variable (CV). We also report the discovery of three new CVs, one of which is a likely magnetic system displaying strong X-ray variability. The soft (0.4–2.0 keV) band log N(>S )−log S curve is completely dominated by active stars in the flux range of 1 × 10−13 to 1 × 10−14 erg cm−2 s−1. Several active coronae are also detected above 2 keV suggesting that the population of RS CVn binaries contributes significantly to the hard X-ray source population. In total, we are able to identify a large fraction of the hard (2–10 keV) X-ray sources in the flux range of 1 × 10−12 to 1 × 10−13 erg cm−2 s−1 with Galactic objects at a rate consistent with what is expected for the Galactic contribution alone.We thank an anonymous referee for useful comments which helped to improve the quality of this paper. We are grateful to O. Herent for carrying out some of the observations presented in this work. This work has been supported in part by the DLR (Deutsches Zentrum für Luftund Raumfahrt) under grants 50 OX 0201 and 50 OX 0801. I.N. is supported by the Spanish Ministerio de Ciencia e Innovación under grants AYA2008-06166-C03-03 and CSD2006-70. This publication makes use of data products from the Two Micron All Sky Survey, which is a joint project of the University of Massachusetts and the Infrared Processing and Analysis Center/California Institute of Technology, funded by the National Aeronautics and Space Administration and the National Science Foundation. The DENIS project has been partly funded by the SCIENCE and the HCM plans of the European Commission under grants CT920791 and CT940627. It is supported by INSU, MEN and CNRS in France, by the State of Baden-Württemberg in Germany, by DGICYT in Spain, by CNR in Italy, by FFwFBWF in Austria, by FAPESP in Brazil, by OTKA grants F-4239 and F-013990 in Hungary, and by the ESO C&EE grant A-04-046. Jean Claude Renault from IAP was the Project manager. Observations were carried out thanks to the contribution of numerous students and young scientists from all involved institutes, under the supervision of P. Fouqué, survey astronomer resident in Chile. The WHT is operated on the island of La Palma by the Isaac Newton Group in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofísica de Canarias. The observation presented here was taken as part of the ING service programme (proposal SW2005A06). This research has made use of Aladin, of the VizieR catalogue access tool and of Simbad at CDS, Strasbourg, France

DataSHIELD – new directions and dimensions

In disciplines such as biomedicine and social sciences, sharing and combining sensitive individual-level data is often prohibited by ethical-legal or governance constraints and other barriers such as the control of intellectual property or the huge sample sizes. DataSHIELD (Data Aggregation Through Anonymous Summary-statistics from Harmonised Individual-levEL Databases) is a distributed approach that allows the analysis of sensitive individual-level data from one study, and the co-analysis of such data from several studies simultaneously without physically pooling them or disclosing any data. Following initial proof of principle, a stable DataSHIELD platform has now been implemented in a number of epidemiological consortia. This paper reports three new applications of DataSHIELD including application to post-publication sensitive data analysis, text data analysis and privacy protected data visualisation. Expansion of DataSHIELD analytic functionality and application to additional data types demonstrate the broad applications of the software beyond biomedical sciences

An intrinsically disordered proteins community for ELIXIR.

Intrinsically disordered proteins (IDPs) and intrinsically disordered regions (IDRs) are now recognised as major determinants in cellular regulation. This white paper presents a roadmap for future e-infrastructure developments in the field of IDP research within the ELIXIR framework. The goal of these developments is to drive the creation of high-quality tools and resources to support the identification, analysis and functional characterisation of IDPs. The roadmap is the result of a workshop titled "An intrinsically disordered protein user community proposal for ELIXIR" held at the University of Padua. The workshop, and further consultation with the members of the wider IDP community, identified the key priority areas for the roadmap including the development of standards for data annotation, storage and dissemination; integration of IDP data into the ELIXIR Core Data Resources; and the creation of benchmarking criteria for IDP-related software. Here, we discuss these areas of priority, how they can be implemented in cooperation with the ELIXIR platforms, and their connections to existing ELIXIR Communities and international consortia. The article provides a preliminary blueprint for an IDP Community in ELIXIR and is an appeal to identify and involve new stakeholders

GA4GH: International policies and standards for data sharing across genomic research and healthcare.

The Global Alliance for Genomics and Health (GA4GH) aims to accelerate biomedical advances by enabling the responsible sharing of clinical and genomic data through both harmonized data aggregation and federated approaches. The decreasing cost of genomic sequencing (along with other genome-wide molecular assays) and increasing evidence of its clinical utility will soon drive the generation of sequence data from tens of millions of humans, with increasing levels of diversity. In this perspective, we present the GA4GH strategies for addressing the major challenges of this data revolution. We describe the GA4GH organization, which is fueled by the development efforts of eight Work Streams and informed by the needs of 24 Driver Projects and other key stakeholders. We present the GA4GH suite of secure, interoperable technical standards and policy frameworks and review the current status of standards, their relevance to key domains of research and clinical care, and future plans of GA4GH. Broad international participation in building, adopting, and deploying GA4GH standards and frameworks will catalyze an unprecedented effort in data sharing that will be critical to advancing genomic medicine and ensuring that all populations can access its benefits