Exact solution of variable coefficient mixed hyperbolic partial differential problems

AbstractThis paper is concerned with the construction of exact series solution of mixed variable coefficient hyperbolic problems

Application of genomic technologies to the breeding of trees

The recent introduction of next generation sequencing (NGS) technologies represents a major revolution in providing new tools for identifying the genes and/or genomic intervals controlling important traits for selection in breeding programs. In perennial fruit trees with long generation times and large sizes of adult plants, the impact of these techniques is even more important. High-throughput DNA sequencing technologies have provided complete annotated sequences in many important tree species. Most of the high-throughput genotyping platforms described are being used for studies of genetic diversity and population structure. Dissection of complex traits became possible through the availability of genome sequences along with phenotypic variation data, which allow to elucidate the causative genetic differences that give rise to observed phenotypic variation. Association mapping facilitates the association between genetic markers and phenotype in unstructured and complex populations, identifying molecular markers for assisted selection and breeding. Also, genomic data provide in silico identification and characterization of genes and gene families related to important traits, enabling new tools for molecular marker assisted selection in tree breeding. Deep sequencing of transcriptomes is also a powerful tool for the analysis of precise expression levels of each gene in a sample. It consists in quantifying short cDNA reads, obtained by NGS technologies, in order to compare the entire transcriptomes between genotypes and environmental conditions. The miRNAs are non-coding short RNAs involved in the regulation of different physiological processes, which can be identified by high-throughput sequencing of RNA libraries obtained by reverse transcription of purified short RNAs, and by in silico comparison with known miRNAs from other species. All together, NGS techniques and their applications have increased the resources for plant breeding in tree species, closing the former gap of genetic tools between trees and annual species

Gene expression analysis in cold stress conditions reveals BBX20 and CLO as potential biomarkers for cold tolerance in almond

Late spring frosts can become one of the limiting factors for the expansion of cultivation area towards a harsher climate for the almond [Prunus amygdalus Batsch syn P. dulcis (Mill.) D.A. Webb] crop as spring frost can damage up to 90% of the harvest. In order to identify key genes favoring cold tolerance in almonds, branches from three late-blooming genotypes: ‘Guara’, ‘Soleta’ and ‘Belona’ were exposed at -4¿C during 24 h in a constant climate chamber. Phenotype analysis showed that ‘Guara’ and ‘Soleta’ had a greater acclimation capacity to cold than ‘Belona’. The qRT-PCR BioMark System technology was used to monitor the relative expression of 30 candidate genes with a potential relation to cold response, which are either involved in the ICE-CBF-COR pathway or the independent CBF pathway, and also genes not yet characterized or with unknown function in almond genome. Differences in the gene expression profiles were found among the three studied genotypes and the three time-points of cold exposure (0, 2 and 24 h). BBX20 and CLO genes behaved as differentiator genes between tolerant and susceptible genotypes in cold stress response in almond pistils. In addition, the differences of expression among the tolerant genotypes suggested the intervention of different mechanisms responding to cold stress in almonds. © 2021 by the authors. Licensee MDPI, Basel, Switzerland

p53 Aberrations do not predict individual response to fludarabine in patients with B-cell chronic lymphocytic leukaemia in advanced stages Rai III/IV

Abnormalities of p53 have been associated with short survival and non-response to therapy in chronic lymphocytic leukaemia (CLL). We have evaluated the rate of response to fludarabine as first-line therapy in 54 patients with advanced stage CLL, analysing the cytogenetic profile, aberrations in p53, including the methylation status of its promoter, and the immunoglobulin heavy-chain variable-region (IGVH) mutation status. According to the advanced stage of the disease in this series, 75% of patients presented genetic aberrations associated with poor prognosis: del(17p) and/or del(11q), and no-mutated IGVH genes. Ten patients (18.5%) had methylation in the promoter region of p53. Eighty-three per cent of patients treated achieved a response, with a high rate of complete remission (47.6%). Although we found a significant correlation between failures and the presence of p53 aberrations (P = 0.0065), either with methylation (P = 0.018) or deletion (P = 0.015), 64% of the patients with aberrations in this gene responded to treatment (11/17), suggesting that fludarabine induces high remission rates, even in these patients. This is the first time that the significance of p53 promoter methylation status is described in this pathology, and our data support that this epigenetic phenomenon could be involved in the pathogenesis and clinical evolution of CLL

Importancia del ablandamiento térmico en simulaciones de impactos en placas de acero a altas temperaturas

En el presente trabajo se presenta un estudio experimental y numérico de impactos balísticos sobre placas de acero inoxidable martensítico a altas temperaturas (400ºC y 700ºC), que pone de manifiesto la importancia del ablandamiento térmico en simulaciones de impactos a altas temperaturas. Mediante un estudio metalográfico de la zona de impacto, se ha observado la aparición de bandas adiabáticas de cortante formadas por el aumento brusco de la temperatura debido a la acumulación del trabajo plástico en el interior del material. La correcta predicción en la formación de estas bandas durante el proceso de penetración es crítica a la hora de obtener resultados representativos de los experimentos realizados. Basándose en datos experimentales de ensayos previamente realizados, se ha calibrado un modelo de material de Johnson-Cook (JC) para su uso con simulaciones numéricas en el código no lineal de elementos finitos LSDYNA. Mediante estas simulaciones numéricas se demuestra la importancia del ablandamiento térmico en el proceso de perforación de placas, al igual que la incapacidad que un modelo tipo JC tiene para representar el dicho ablandamiento para material estudiado. Esta investigación presenta, finalmente, una modificación a un modelo tipo JC programado como subrutina de material de usuario para LS-DYNA que permite simular correctamente estos procesos de impacto a alta temperatur

Efficacy and safety of trabectedin in metastatic uterine leiomyosarcoma: A retrospective multicenter study of the Spanish ovarian cancer research group (GEICO)

Objective: We assessed trabectedin in patients with advanced uterine leiomyosarcoma (uLMS) in real-life clinical practice given according to the marketing authorization. Methods: Thirty-six women from 11 tertiary hospitals across Spain who received trabectedin after anthracycline-containing regimen/s were retrospectively analyzed. The primary endpoint was progression-free survival (PFS). Results: Median PFS and overall survival (OS) since starting trabectedin treatment were 5.4 (95%CI: 3.5–7.3) and 18.5 months (95%CI: 11.5–25.6), respectively. Median OS was significantly higher (P = 0.028) in patients receiving trabectedin in = 2nd line (25.3 months) than in = 3rd (15.1 months) and with ECOG performance status = 1 at trabectedin start (19.8 months) than ECOG 2–3 (6.0 months, P = 0.013). When calculating OS since diagnosis, patients had longer OS with localized disease at diagnosis (87.4 months) vs. locally advanced (30.0 months) or metastatic (44.0 months, P = 0.041); and patients who received adjuvant therapy (87.4 months) compared with those who did not (30.0 months, P = 0.003), especially when receiving radiochemotherapy (106.7 months, P = 0.027). One patient (2.8%) had a complete response (CR) and nine patients (25.0%) achieved a partial response (PR) for an objective response rate of 27.8% with median response duration of 11 months (range: 4–93). Eighteen patients (50.0%) had disease stabilization for a disease control rate (DCR) of 77.8%. More patients receiving trabectedin in 1st-line of advanced disease achieved CR (16.7%) and PR (50.0%) than those in = 2nd line/s (0.0% and 20.0%), whereas the DCR was similar across treatment lines. Reversible neutropenia was the most common grade 3/4 laboratory abnormality (19.4%). Conclusions: Trabectedin confers clinical benefit in patients with recurrent/metastatic uLMS, given after failure to an anthracycline-based regimen being comparable to those reported in clinical trials and with a manageable safety profile

Key plant species and detritivores drive diversity effects on instream leaf litter decomposition more than functional diversity: A microcosm study

Anthropogenic impacts on freshwater ecosystems cause critical losses of biodiversity that can in turn impair key processes such as decomposition and nutrient cycling. Forest streams are mainly subsidized by terrestrial organic detritus, so their functioning and conservation status can be altered by changes in forest biodiversity and composition, particularly if these changes involve the replacement of functional groups or the loss of key species. We examined this issue using a microcosm experiment where we manipulated plant functional diversity (FD) (monocultures and low-FD and high-FD mixtures, resulting from different combinations of deciduous and evergreen Quercus species) and the presence of a key species (Alnus glutinosa), all in presence and absence of detritivores, and assessed effects on litter decomposition, nutrient cycling, and fungal and detritivore biomass. We found (i) positive diversity effects on detritivore-mediated decomposition, litter nutrient losses and detritivore biomass exclusively when A. glutinosa was present; and (ii) negative effects on the same processes when microbially mediated and on fungal biomass. Most positive trends could be explained by the higher litter palatability and litter trait variability obtained with the inclusion of alder leaves in the mixture. Our results support the hypothesis of a consistent slowing down of the decomposition process as a result of plant biodiversity loss, and hence effects on stream ecosystem functioning, especially when a key (N-fixing) species is lost; and underscore the importance of detritivores as drivers of plant diversity effects in the studied ecosystem processes.This study was funded by the 2014–2020 FEDER Operative Program Andalusia (RIOVEGEST project, Ref. FEDER-UAL18 -RNM -B006 – B, to J.J.C). Additional support was provided by the Spanish Ministry for Science, Innovation and Universities and FEDER (BioLoss project, Ref. RTI2018-095023- B-I00, to L.B.). Rubio-Ríos was supported by an FPU grant of the Spanish Ministry of Education, Culture and Sports (reference FPU16/03734)

Effects of environmental variables on the distribution of juvenile cubomedusae Carybdea marsupialis in the coastal Western Mediterranean

[EN] Relationships between environmental factors and oscillations in jellyfish abundance, especially in the early life stages, could help to interpret past increases and also predict scenarios in a changing future. For the first time, we present cubozoan spatial and temporal distributions in the earliest stages and their relationships with different factors. Abundances ofCarybdea marsupialismedusae showed high interannual variability from 2008 to 2014 along the Denia coast (SE Spain, W Mediterranean). During 2015, samples were collected from 11 beaches along 17 km of coastline, 8 times from January to November in order to determine the effects of environmental factors on the distribution of juvenileC.marsupialis. Juveniles (<= 15 mm diagonal bell width) were present from May to July, with more sampled near shore (0-15 m). Most of them occurred in June when their numbers were unequal among beaches (average 0.05 ind m(-3), maximum 6.71 ind m(-3)). We tested distributions of juveniles over time and space versus temperature, salinity, nutrients (N, P and Si), chlorophyll-a(Chl-a), and zooplankton abundance. Temperature and cladocerans (zooplankton group) were significantly positively correlated with juvenile distribution, whereas Chl-aconcentration was weakly negative. By contrast, in 2014, high productivity areas (Chl-aand zooplankton) overlapped the maximum adult abundance (5.2 ind m(-3)). The distribution of juveniles during 2015 did not spatially coincide with the areas where ripe adults were located the previous year, suggesting that juveniles drift with the currents upon release from the cubopolyps. Our results yield important insights into the complexity of cubozoan distributions.This study has received funding through European Commission's LIFE programme [LIFE08 NAT ES64 CUBOMED.eu to C.B. from the Alicante University and V.L.F. from the Institute of Marine Science, CSIC, Spain], and from the D.G Sostenibilidad de la Costa y el Mar from the Spanish Ministry of Agriculture, Food and the Environment, the Fundacion Biodiversidad, and the D.G. Agua -Generalitat Valenciana. It has also received support from Parques Nacionales and Ajuntament de Denia. We are grateful for the collaboration of Fundació Baleària, Marina El Portet de Dénia and Marina de Dénia. This work is a contribution from the ¿Ramon Margalef¿ Environmental Research Institute (IMEM) from the University of Alicante, Spain. We are especially grateful for the sampling and laboratory support provided in the Montgó Research Station by NGO ACIF Marina Alta volunteers: Ángela Alba, Ainara Ballesteros, Miguel Escolano, Ángel Fernández, Marta Gil, Héctor Gutiérrez, Ainara Lacalle and Alba Pérez. We would also like to extend our thanks to Jordi Alventosa and Júlia Escrivá from IGIC-Polytechnic Valencia University for their contribution to nutrient analysis. Editing services were provided by Sea Pen Scientific Writing.Bordehore, C.; Fonfría, E.; Alonso, C.; Rubio-Tortosa, B.; Acevedo, M.; Canepa, A.; Falco, S.... (2020). Effects of environmental variables on the distribution of juvenile cubomedusae Carybdea marsupialis in the coastal Western Mediterranean. PLoS ONE. 15(6):1-20. https://doi.org/10.1371/journal.pone.0230768S120156Purcell, J., Uye, S., & Lo, W. (2007). Anthropogenic causes of jellyfish blooms and their direct consequences for humans: a review. 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Changes in Biomarkers of Redox Status in Saliva of Pigs after an Experimental Sepsis Induction

Saliva from pigs is gaining attention as an easy sample to obtain, being a source of biomarkers that can provide information on animal health and welfare. This study aimed to evaluate the changes that can occur in salivary biomarkers of the redox status of pigs with an experimentally induced sepsis. For that, the cupric reducing antioxidant capacity (CUPRAC), ferric reducing ability of saliva (FRAS), Trolox equivalent antioxidant capacity (TEAC), advanced oxidation protein products (AOPP), ferrous oxidation-xylenol orange (FOX), peroxide activity (POX-Act), and reactive oxygen-derived compounds (d-ROMs) were measured in the saliva of pigs with experimentally induced sepsis by endotoxin lipopolysaccharide (LPS), non-septic inflammation induced by turpentine, and in healthy individuals before and after 3 h, 6 h, 24 h, and 48 h. AOPP, POX-Act, and d-ROMs in the sepsis group were higher than in the control from 3 h to 24 h after the inoculation. CUPRAC, FRAS, and TEAC were higher in sepsis than the control group at 24 h. These changes were of higher magnitude than those that occurred in the turpentine group. In conclusion, our findings reveal that sepsis produces changes in salivary biomarkers of redox status, which opens the possibility of using them as potential biomarkers in this species