37 research outputs found
Data management for heterogeneous research environments with CaosDB -- Experiences from an MPDL Open Source development project
Experimental and theoretical scientists in the turbulence department at the MPI-DS in Göttingen produce a large variety of heterogeneous data and analyze it in a number of different environments. In an MPDL project, the open source research data management software CaosDB was enhanced to meet these needs and hopefully those of other research groups as well. We will show the results of this process: automated integration of data from metadata-rich raw HDF 5 files and a new API with language bindings for Octave, C++ and Julia. Additionally, the user documentation was overhauled, programming tutorials published and perfomance bottlenecks identified. We will also share insights about "soft" measures to increase the overall utility of semantic data management: practical guidelines for scientists to produce truly FAIR data and workshops to empower scientists to work with CaosDB
Dynamics of Weak First Order Phase Transitions
The dynamics of weak vs. strong first order phase transitions is investigated
numerically for 2+1 dimensional scalar field models. It is argued that the
change from a weak to a strong transition is itself a (second order) phase
transition, with the order parameter being the equilibrium fractional
population difference between the two phases at the critical temperature, and
the control parameter being the coefficient of the cubic coupling in the
free-energy density. The critical point is identified, and a power law
controlling the relaxation dynamics at this point is obtained. Possible
applications are briefly discussed.Comment: 11 pages, 4 figures in uuencoded compressed file (see instructions in
main text), RevTeX, DART-HEP-94/0
Initial sequencing and analysis of the human genome
The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available a draft sequence of the human genome. We also present an initial analysis of the data, describing some of the insights that can be gleaned from the sequence.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/62798/1/409860a0.pd
Finishing the euchromatic sequence of the human genome
The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers âŒ99% of the euchromatic genome and is accurate to an error rate of âŒ1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead
EURECâŽA
The science guiding the EURECâŽA campaign and its measurements is presented. EURECâŽA comprised roughly 5 weeks of measurements in the downstream winter trades of the North Atlantic â eastward and southeastward of Barbados. Through its ability to characterize processes operating across a wide range of scales, EURECâŽA marked a turning point in our ability to observationally study factors influencing clouds in the trades, how they will respond to warming, and their link to other components of the earth system, such as upper-ocean processes or the life cycle of particulate matter. This characterization was made possible by thousands (2500) of sondes distributed to measure circulations on meso- (200âkm) and larger (500âkm) scales, roughly 400âh of flight time by four heavily instrumented research aircraft; four global-class research vessels; an advanced ground-based cloud observatory; scores of autonomous observing platforms operating in the upper ocean (nearly 10â000 profiles), lower atmosphere (continuous profiling), and along the airâsea interface; a network of water stable isotopologue measurements; targeted tasking of satellite remote sensing; and modeling with a new generation of weather and climate models. In addition to providing an outline of the novel measurements and their composition into a unified and coordinated campaign, the six distinct scientific facets that EURECâŽA explored â from North Brazil Current rings to turbulence-induced clustering of cloud droplets and its influence on warm-rain formation â are presented along with an overview of EURECâŽA's outreach activities, environmental impact, and guidelines for scientific practice. Track data for all platforms are standardized and accessible at https://doi.org/10.25326/165 (Stevens, 2021), and a film documenting the campaign is provided as a video supplement
EURECâŽA
The science guiding the EURECâŽA campaign and its measurements is presented. EURECâŽA comprised roughly 5 weeks of measurements in the downstream winter trades of the North Atlantic â eastward and southeastward of Barbados. Through its ability to characterize processes operating across a wide range of scales, EURECâŽA marked a turning point in our ability to observationally study factors influencing clouds in the trades, how they will respond to warming, and their link to other components of the earth system, such as upper-ocean processes or the life cycle of particulate matter. This characterization was made possible by thousands (2500) of sondes distributed to measure circulations on meso- (200âkm) and larger (500âkm) scales, roughly 400âh of flight time by four heavily instrumented research aircraft; four global-class research vessels; an advanced ground-based cloud observatory; scores of autonomous observing platforms operating in the upper ocean (nearly 10â000 profiles), lower atmosphere (continuous profiling), and along the airâsea interface; a network of water stable isotopologue measurements; targeted tasking of satellite remote sensing; and modeling with a new generation of weather and climate models. In addition to providing an outline of the novel measurements and their composition into a unified and coordinated campaign, the six distinct scientific facets that EURECâŽA explored â from North Brazil Current rings to turbulence-induced clustering of cloud droplets and its influence on warm-rain formation â are presented along with an overview of EURECâŽA's outreach activities, environmental impact, and guidelines for scientific practice. Track data for all platforms are standardized and accessible at https://doi.org/10.25326/165 (Stevens, 2021), and a film documenting the campaign is provided as a video supplement
Viewing Time Effects Revisited: Prolonged Response Latencies for Sexually Attractive Targets Under Restricted Task Conditions
Sexually attractive stimuli are watched longer than unattractive stimuli. The processes underlying this robust and reliable viewing time effect are presently not well understood. In the present research comprising four experiments (total N = 250), four classes of potential explanations are proposed and the derived implications were experimentally tested. Contrary to explanations based on either deliberate delay or attentional adhesion to sexually attractive stimuli, prolonged response latencies were also found under restricted task conditions. Sexually preferred targets elicited longer response latencies in a self-paced evaluation task when stimulus pictures were presented for 750 ms (Experiment 1) or for 500 ms and followed by a pattern mask (Experiment 2). Prolonged latencies for sexually preferred targets were also observed when sexual attractiveness was rated in a speeded binary decision task with a response window of 1000 ms (Experiment 3). Eventually, it was shown that the response latency effect in the speeded binary choice task was still preserved when only the heads of target individuals were presented instead of the bodies (Experiment 4). Mate identification and schematic processes are discussed as the remaining plausible mechanisms for prolonged response latencies for sexually attractive targets under restricted conditions