Spherical harmonic decomposition applied to spatial-temporal analysis of human high-density EEG

We demonstrate an application of spherical harmonic decomposition to analysis of the human electroencephalogram (EEG). We implement two methods and discuss issues specific to analysis of hemispherical, irregularly sampled data. Performance of the methods and spatial sampling requirements are quantified using simulated data. The analysis is applied to experimental EEG data, confirming earlier reports of an approximate frequency-wavenumber relationship in some bands.Comment: 12 pages, 8 figures, submitted to Phys. Rev. E, uses APS RevTeX style

Model of Low-pass Filtering of Local Field Potentials in Brain Tissue

Local field potentials (LFPs) are routinely measured experimentally in brain tissue, and exhibit strong low-pass frequency filtering properties, with high frequencies (such as action potentials) being visible only at very short distances ($\approx$10~$\mu m$) from the recording electrode. Understanding this filtering is crucial to relate LFP signals with neuronal activity, but not much is known about the exact mechanisms underlying this low-pass filtering. In this paper, we investigate a possible biophysical mechanism for the low-pass filtering properties of LFPs. We investigate the propagation of electric fields and its frequency dependence close to the current source, i.e. at length scales in the order of average interneuronal distance. We take into account the presence of a high density of cellular membranes around current sources, such as glial cells. By considering them as passive cells, we show that under the influence of the electric source field, they respond by polarisation, i.e., creation of an induced field. Because of the finite velocity of ionic charge movement, this polarization will not be instantaneous. Consequently, the induced electric field will be frequency-dependent, and much reduced for high frequencies. Our model establishes that with respect to frequency attenuation properties, this situation is analogous to an equivalent RC-circuit, or better a system of coupled RC-circuits. We present a number of numerical simulations of induced electric field for biologically realistic values of parameters, and show this frequency filtering effect as well as the attenuation of extracellular potentials with distance. We suggest that induced electric fields in passive cells surrounding neurons is the physical origin of frequency filtering properties of LFPs.Comment: 10 figs, revised tex file and revised fig

Changes in growth of tropical forests: evaluating potential biases

Over the past century almost every ecosystem on Earth has come under the influence of changes in atmospheric composition and climate caused by human activity. Tropical forests are among the most productive and extensive ecosystems, and it has been hypothesized that both the dynamics and biomass of apparently undisturbed, old-growth tropical forests have been changing in response to atmospheric changes. Long-term forest sample plots are a critical tool in detecting and monitoring such changes, and our recent analysis of pan-tropical-forest plot data has suggested that the biomass of tropical forests has been increasing, providing a modest negative feedback on the rate of accumulation of atmospheric CO2. However, it has been argued that some of these old forest plot data sets have significant problems in interpretation because of the use of nonstandardized methodologies. In this paper we examine the extent to which potential field methodological errors may bias estimates of total biomass change by detailed examination of tree-by-tree records from up to 120 Neotropical plots to test predictions from theory. Potential positive biases on measurements of biomass change include a bias in site selection, tree deformities introduced by the measurement process, poor methodologies to deal with tree deformities or buttresses, and nonrecording of negative growth increments. We show that, while it is important to improve and standardize methodologies in current and future forest-plot work, any systematic errors introduced by currently identified biases in past studies are small and calculable. We conclude that most tropical-forest plot data are of useful quality, and that the evidence does still weigh conclusively in favor of a recent increase of biomass in old-growth tropical forests

Geometry of the extreme Kerr black holes

Geometrical properties of the extreme Kerr black holes in the topological sectors of nonextreme and extreme configurations are studied. We find that the Euler characteristic plays an essential role to distinguish these two kinds of extreme black holes. The relationship between the geometrical properties and the intrinsic thermodynamics are investigated.Comment: Latex version, 10 page

SnTox3 Acts in Effector Triggered Susceptibility to Induce Disease on Wheat Carrying the Snn3 Gene

The necrotrophic fungus Stagonospora nodorum produces multiple proteinaceous host-selective toxins (HSTs) which act in effector triggered susceptibility. Here, we report the molecular cloning and functional characterization of the SnTox3-encoding gene, designated SnTox3, as well as the initial characterization of the SnTox3 protein. SnTox3 is a 693 bp intron-free gene with little obvious homology to other known genes. The predicted immature SnTox3 protein is 25.8 kDa in size. A 20 amino acid signal sequence as well as a possible pro sequence are predicted. Six cysteine residues are predicted to form disulfide bonds and are shown to be important for SnTox3 activity. Using heterologous expression in Pichia pastoris and transformation into an avirulent S. nodorum isolate, we show that SnTox3 encodes the SnTox3 protein and that SnTox3 interacts with the wheat susceptibility gene Snn3. In addition, the avirulent S. nodorum isolate transformed with SnTox3 was virulent on host lines expressing the Snn3 gene. SnTox3-disrupted mutants were deficient in the production of SnTox3 and avirulent on the Snn3 differential wheat line BG220. An analysis of genetic diversity revealed that SnTox3 is present in 60.1% of a worldwide collection of 923 isolates and occurs as eleven nucleotide haplotypes resulting in four amino acid haplotypes. The cloning of SnTox3 provides a fundamental tool for the investigation of the S. nodorum-wheat interaction, as well as vital information for the general characterization of necrotroph-plant interactions.This work was supported by USDA-ARS CRIS projects 5442-22000-043-00D and 5442-22000-030-00D

Replication, Pathogenesis and Transmission of Pandemic (H1N1) 2009 Virus in Non-Immune Pigs

The declaration of the human influenza A pandemic (H1N1) 2009 (H1N1/09) raised important questions, including origin and host range [1,2]. Two of the three pandemics in the last century resulted in the spread of virus to pigs (H1N1, 1918; H3N2, 1968) with subsequent independent establishment and evolution within swine worldwide [3]. A key public and veterinary health consideration in the context of the evolving pandemic is whether the H1N1/09 virus could become established in pig populations [4]. We performed an infection and transmission study in pigs with A/California/07/09. In combination, clinical, pathological, modified influenza A matrix gene real time RT-PCR and viral genomic analyses have shown that infection results in the induction of clinical signs, viral pathogenesis restricted to the respiratory tract, infection dynamics consistent with endemic strains of influenza A in pigs, virus transmissibility between pigs and virus-host adaptation events. Our results demonstrate that extant H1N1/09 is fully capable of becoming established in global pig populations. We also show the roles of viral receptor specificity in both transmission and tissue tropism. Remarkably, following direct inoculation of pigs with virus quasispecies differing by amino acid substitutions in the haemagglutinin receptor-binding site, only virus with aspartic acid at position 225 (225D) was detected in nasal secretions of contact infected pigs. In contrast, in lower respiratory tract samples from directly inoculated pigs, with clearly demonstrable pulmonary pathology, there was apparent selection of a virus variant with glycine (225G). These findings provide potential clues to the existence and biological significance of viral receptor-binding variants with 225D and 225G during the 1918 pandemic [5]

Fungi in a Warmer World - Fungal diversity from the Peak Warming of the Miocene Climate Optimum as Recorded in the Latah Formation, Clarkia, Idaho, USA

Microfungi are a vital part of ecosystems as they help with key processes, such as carbon and nutrient cycling, especially through the actions of mycorrhizal and saprotrophic members (Nuñez Otaño et al., 2015, 2021; Willis et al., 2018). Microfungi can also be good indicators of plant biodiversity in an area because many fungal taxa are host-specific (Rutten et al., 2021; Francioli et al., 2021; Hu et al., 2021; Wijayawardene et al., 2022 ). Despite being crucial components in ecosystems, they are often overlooked. In the fossil record, microfungi have a high preservaon rate and they are often preserved close to the original substrate they were deposited in. This makes them an important proxy for understanding local past ecological and climatological conditions (Romero et al., 2021, O’Keefe et al., 2017). The Fungi in a Warmer World project seeks to use fossil fungal assemblages to study changes in biodiversity during the Miocene Climate Opmum (MCO), a period of peak warming that closely mirrors current and projected warming trends (Steinthorsdotter et al., 2021). The current atmospheric CO2 concentraon is around 420 ppm but is rapidly approaching the MCO average of 450-550 ppm (Steinthorsdotter et al., 2021).https://scholarworks.moreheadstate.edu/celebration_posters_2022/1045/thumbnail.jp

(Ga,Mn)As based superlattices and the search for antiferromagnetic interlayer coupling

Antiferromagnetic interlayer coupling in dilute magnetic semiconductor superlattices could result in the realisation of large magnetoresistance effects analogous to the giant magnetoresistance seen in metallic multilayer structures. In this paper we use a mean-field theory of carrier induced ferromagnetism to explore the multidimensional parameter space available in (Ga,Mn)As based superlattice systems. Based on these investigations we examine the feasibility of creating a superlattice that exhibits antiferromagnetic coupling and suggest potentially viable recipes.Comment: 11 pages, 9 figure

Evaluation of the Acute Effects of Organic Solvents on Adults of Sitophilus zeamais Motschulsky, 1855 (Coleoptera, Curculionidae)

The continuous use of synthetic insecticides has created problems for the environment and human health. With the objective of reducing such problems, ecofriendly measures have been taken and, in this case, plants have representing an important resource for pest control. Due to the increase of studies using organic extracts in bioassays and the difficulty of finding solubilizant agents that do not interfere in the results, the aim of this work was to evaluated the acute effect of different solvents on Sitophilus zeamais by contact and ingestion assays. The results suggest that pure dimethyl sulphoxide (DMSO) and Tween- 20 solvents have toxic acute effects on adults of S. zeamais, but they can be used diluted at 1 or 5% with no toxic acute effect. On contrary, pure dichloromethane (DCM) and methanol (MeOH) did not cause any acute effect on target organism. Thus, DCM and MeOH solvents even in the pure form and the Tween-20 and DMSO diluted at 1 or 5% can be used as solubilizant agents for apolar to medium polarity plant extracts, involving contact or ingestion assay on adults of S. zeamais. Keywords: plant extracts, stored grain pest, solvents, toxicity

How large could the R-parity violating couplings be?

We investigate in detail the predictions coming from the d=4 operators for proton decay. We find the most general constraints for the R-parity violating couplings coming from proton decay, taking into account all fermion mixing and in different supersymmetric scenarios.Comment: 8 pages, several corrections, to appear in J.Phys.G (2005