Changes in Soil Ecosystem Structure and Functions Due to Soil Contamination

Soil ecosystems are nowadays exposed to several physical, chemical and biological stressors, which are directly or indirectly related to anthropogenic activities. This chapter covers how contaminants affect the soil ecosystem structure, changing soil functions and services. Soil ecosystem structure is constituted by dynamic interactive abiotic and biotic compartments, dependent on major key factors like water and light. By changing this balanced system, soil functions are also impaired as they are strictly dependent on this structure and biodiversity. Soil functions include carbon transformations, nutrient cycling, maintenance of the structure itself, and regulation of biological populations. Activities like mining, agriculture, forestry or waste disposal are often responsible for the unbalance of soil structure and functions, by jeopardizing majorly the functional biodiversity compartment of the ecosystem. Therefore, the provision of goods along with ecosystem services will be also affected. Valuing soil ecosystem services is a difficult task and often lacking at the policymaking level, as the costs of services losses can go unnoticed. Therefore new strategies should be implemented to bring the concepts of structure, functions, services and goods on board at the regulation level.publishe

Probing the Structure of Liquids with 129Xe NMR Spectroscopy: n-Alkanes, Cycloalkanes, and Branched Alkanes

The liquid organization of linear, branched, and cyclic alkanes was studied using atomic 129Xe as a NMR probe. 129Xe chemical shifts have been experimentally determined for xenon dissolved in a total of 21 alkanes. In order to allow the comparison of the different solvents at similar thermodynamic conditions, the measurements were performed over a wide range of temperatures, from the melting point of the solvent up to 350 K. The results were rationalized in terms of the density, nature, and organization of the chemical groups within xenon’s coordination sphere. Additionally, molecular dynamics simulations were performed using established atomistic force fields to interpret and clarify the conclusions suggested by the experimental results. The analysis is able to interpret previous results in the literature for ethane and propane at very different experimental conditions

Evaluation of the joint effect of glyphosate and dimethoate using a small-scale terrestrial ecosystem

In the present work a small-scale terrestrial ecosystem (STEM) containing a soil collected from an agricultural field in Central Portugal was used to evaluate the effects of the combination of the herbicide glyphosate and the insecticide dimethoate. Earthworms (Eisenia andrei), isopods (Porcellionides pruinosus), turnip seeds (Brassica rapa), and bait-lamina strips were placed in the STEM. The results showed that the application of the recommended field dose of both pesticides did not cause any effect on the weight variation of earthworms and growth of the plants. The application of the herbicide, even at 5 and 10 times the field dose, increased feeding activity in soil (bait-lamina test), although the application of dimethoate led to a decrease in feeding activity in all concentrations tested. The binary mixtures performed showed that according to the Independent Action model, synergism (higher effect than expected from the single exposures) was observed in both the shoot length and fresh weight of B. rapa at 5 times the field dose, but antagonism was observed at 10 times the field dose. Regarding the germination success, synergism was observed at the field dose, but antagonism was detected at 5 times and 10 times the field dose. There was a decrease on the earthworm's weight in all concentrations tested, although no statistical differences were observed in any of the treatments made. Regarding depth distribution of E. andrei, worms were found in the upper layer more than it was predicted for all concentrations. In the mixtures with the field and 5 times the field dose there was a decrease in the feeding activity (bait-lamina consumption) by the soil fauna. From the four biomarkers assessed on the isopods (Catalase, Acetylcholinesterase, Glutathione-S-transferase, and Lipid peroxidation), only a significant decrease in the Acetylcholinesterase activity upon dimethoate and the binary mixtures exposures performed with the field dose was observed and on Lipid peroxidation at the field doses of single and binary exposures. (C) 2011 Elsevier Inc. All rights reserved

Joint effects of chlorpyrifos and mancozeb to the terrestrial isopod Porcellionides pruinosus: a multiple biomarker approach

The exposure to pesticides by non-target soil biota has long been regarded as a serious downside of modern agriculture regimes and subject of heated debate. Of utmost relevance is the exposure to pesticide mixtures since their effects have shown not to necessarily reflect the individual toxicity of its components and even the simple addition of effects may lead to consequences not clearly anticipated. In this work, a multiple biomarker approach was employed to identify the mechanistic and time-effects underlying several single and mixture treatments of chlorpyrifos and mancozeb in juveniles and adults of the terrestrial isopod Porcellionides pruinosus. The effects of both pesticides and mixture at recommended doses were mostly transitory under these controlled conditions and one-pulse exposure. While imbalances were identified on detoxification and oxidative stress-related enzymes, isopods generally showed the ability to recover until the end of the experiment. Juveniles showed, however, higher vulnerability than adults. The most notorious differences between life stages occurred in energy-related parameters where distinct performances and stress-handling behaviours were observed, suggesting higher metabolic costs in juveniles. Our results stress that understanding the time-dependence of the underlying mechanisms governing the joint-effects of pesticides can help assessing and anticipating mixtures’ effects. Moreover, it is also emphasized the importance taking life stage-related differences in consideration when evaluating the environmental risks of pesticides and pesticide mixtures

Gut and faecal bacterial community of the terrestrial isopod porcellionides pruinosus: potential use for monitoring exposure scenarios

This work aimed to characterize the gut and faeces bacterial communities (BC) of Porcellionides pruinosus using high-throughput sequencing. Isopods were collected from the field and kept in laboratory conditions similar to those normally applied in ecotoxicology tests. Faeces and purged guts of isopods (n=3 × 30) were analysed by pyrosequencing the V3-V4 region of 16 S rRNA encoding gene. Results showed that gut and faecal BCs were dominated by Proteobacteria, particularly by an OTU (Operational Taxonomic Unit) affiliated to genus Coxiella. Diversity and richness values were statistically higher for faecal BC, mainly due to the occurrence of several low-abundance phylotypes. These results may reflect faecal carriage of bacterial groups that cannot settle in the gut. BCs of P. pruinosus comprised: (1) common members of the soil microbiota, (2) bacterial symbionts, (3) bacteria related to host metabolic/ecological features, and (4) bacterial etiological agents. Comparison of BC of this isopod species with the BC from other invertebrates revealed common bacterial groups across taxa. The baseline information provided by this work will assist the design and data interpretation of future ecotoxicological or biomonitoring assays where the analysis of P. pruinosus BC should be included as an additional indicator.publishe

A preliminary fishery quality index for Portuguese streams

There is a need to quantify the multivariate quality of a recreational fishery at the site scale to better communicate the relative quality among sites to the public and anglers. Borrowing on the general approach of multimetric indices of biotic integrity (IBIs), we developed fishery quality indices (FQIs) from species quality indices (SQIs) based on measures of fish abundance and size structure for northern and central Portuguese streams. Our FQIs showed regional patterns indicating a range in fishery quality. Higher coldwater FQI scores were mostly found in the northwestern (Minho and Lima), northeastern Douro, and northern Tagus basins. Higher warmwater FQI scores occurred in the eastern Tagus basin. The species that contributed the most to warmwater FQI scores were largemouth bass Micropterus salmoides, pumpkinseed Lepomis gibbosus, the cyprinid Luciobarbus bocagei, chubs Squalius carolitertii and S. pyrenaicus, and nases Pseudochondrostoma duriense and P. polylepis. The chubs, nases, and brown trout Salmo trutta contributed the most to coldwater FQI scores. As expected, our indices were correlated with river size and with disturbance at the catchment, segment, and site scales. Regression models for separate coldwater and warmwater FQIs were stronger than those for the individual SQIs and for an all-site FQI. The correlation was positive between the coldwater FQI and a coldwater IBI but negative between the warmwater FQI and warmwater IBIs. The proposed FQIs offer a quantitative approach for assessing relative fishery quality among sites and for making regional assessments given an appropriate study design. The component SQIs and SQI metrics of the FQIs can be disassociated to determine the population and species characteristics most affected by various environmental variables

Constraints on the structure and seasonal variations of Triton's atmosphere from the 5 October 2017 stellar occultation and previous observations

Context. A stellar occultation by Neptune's main satellite, Triton, was observed on 5 October 2017 from Europe, North Africa, and the USA. We derived 90 light curves from this event, 42 of which yielded a central flash detection. Aims. We aimed at constraining Triton's atmospheric structure and the seasonal variations of its atmospheric pressure since the Voyager 2 epoch (1989). We also derived the shape of the lower atmosphere from central flash analysis. Methods. We used Abel inversions and direct ray-tracing code to provide the density, pressure, and temperature profiles in the altitude range similar to 8 km to similar to 190 km, corresponding to pressure levels from 9 mu bar down to a few nanobars. Results. (i) A pressure of 1.18 +/- 0.03 mu bar is found at a reference radius of 1400 km (47 km altitude). (ii) A new analysis of the Voyager 2 radio science occultation shows that this is consistent with an extrapolation of pressure down to the surface pressure obtained in 1989. (iii) A survey of occultations obtained between 1989 and 2017 suggests that an enhancement in surface pressure as reported during the 1990s might be real, but debatable, due to very few high S/N light curves and data accessible for reanalysis. The volatile transport model analysed supports a moderate increase in surface pressure, with a maximum value around 2005-2015 no higher than 23 mu bar. The pressures observed in 1995-1997 and 2017 appear mutually inconsistent with the volatile transport model presented here. (iv) The central flash structure does not show evidence of an atmospheric distortion. We find an upper limit of 0.0011 for the apparent oblateness of the atmosphere near the 8 km altitude.J.M.O. acknowledges financial support from the Portuguese Foundation for Science and Technology (FCT) and the European Social Fund (ESF) through the PhD grant SFRH/BD/131700/2017. The work leading to these results has received funding from the European Research Council under the European Community's H2020 2014-2021 ERC grant Agreement nffi 669416 "Lucky Star". We thank S. Para who supported some travels to observe the 5 October 2017 occultation. T.B. was supported for this research by an appointment to the National Aeronautics and Space Administration (NASA) Post-Doctoral Program at the Ames Research Center administered by Universities Space Research Association (USRA) through a contract with NASA. We acknowledge useful exchanges with Mark Gurwell on the ALMA CO observations. This work has made use of data from the European Space Agency (ESA) mission Gaia (https://www.cosmos.esa.int/gaia), processed by the Gaia Data Processing and Analysis Consortium (DPAC, https://www.cosmos.esa.int/web/gaia/dpac/consortium).Funding for the DPAC has been provided by national institutions, in particular the institutions participating in the Gaia Multilateral Agreement. J.L.O., P.S.-S., N.M. and R.D. acknowledge financial support from the State Agency for Research of the Spanish MCIU through the "Center of Excellence Severo Ochoa" award to the Instituto de Astrofisica de Andalucia (SEV-2017-0709), they also acknowledge the financial support by the Spanish grant AYA-2017-84637-R and the Proyecto de Excelencia de la Junta de Andalucia J.A. 2012-FQM1776. The research leading to these results has received funding from the European Union's Horizon 2020 Research and Innovation Programme, under Grant Agreement no. 687378, as part of the project "Small Bodies Near and Far" (SBNAF). P.S.-S. acknowledges financial support by the Spanish grant AYA-RTI2018-098657-J-I00 "LEO-SBNAF". The work was partially based on observations made at the Laboratorio Nacional de Astrofisica (LNA), Itajuba-MG, Brazil. The following authors acknowledge the respective CNPq grants: F.B.-R. 309578/2017-5; R.V.-M. 304544/2017-5, 401903/2016-8; J.I.B.C. 308150/2016-3 and 305917/2019-6; M.A. 427700/20183, 310683/2017-3, 473002/2013-2. This study was financed in part by the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior -Brasil (CAPES) -Finance Code 001 and the National Institute of Science and Technology of the e-Universe project (INCT do e-Universo, CNPq grant 465376/2014-2). G.B.R. acknowledges CAPES-FAPERJ/PAPDRJ grant E26/203.173/2016 and CAPES-PRINT/UNESP grant 88887.571156/2020-00, M.A. FAPERJ grant E26/111.488/2013 and A.R.G.Jr. FAPESP grant 2018/11239-8. B.E.M. thanks CNPq 150612/2020-6 and CAPES/Cofecub-394/2016-05 grants. Part of the photometric data used in this study were collected in the frame of the photometric observations with the robotic and remotely controlled telescope at the University of Athens Observatory (UOAO; Gazeas 2016). The 2.3 m Aristarchos telescope is operated on Helmos Observatory by the Institute for Astronomy, Astrophysics, Space Applications and Remote Sensing of the National Observatory of Athens. Observations with the 2.3 m Aristarchos telescope were carried out under OPTICON programme. This project has received funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730890. This material reflects only the authors views and the Commission is not liable for any use that may be made of the information contained therein. The 1. 2m Kryoneri telescope is operated by the Institute for Astronomy, Astrophysics, Space Applications and Remote Sensing of the National Observatory of Athens. The Astronomical Observatory of the Autonomous Region of the Aosta Valley (OAVdA) is managed by the Fondazione Clement Fillietroz-ONLUS, which is supported by the Regional Government of the Aosta Valley, the Town Municipality of Nus and the "Unite des Communes valdotaines Mont-Emilius". The 0.81 m Main Telescope at the OAVdA was upgraded thanks to a Shoemaker NEO Grant 2013 from The Planetary Society. D.C. and J.M.C. acknowledge funds from a 2017 'Research and Education' grant from Fondazione CRT-Cassa di Risparmio di Torino. P.M. acknowledges support from the Portuguese Fundacao para a Ciencia e a Tecnologia ref. PTDC/FISAST/29942/2017 through national funds and by FEDER through COMPETE 2020 (ref. POCI010145 FEDER007672). F.J. acknowledges Jean Luc Plouvier for his help. S.J.F. and C.A. would like to thank the UCL student support observers: Helen Dai, Elise Darragh-Ford, Ross Dobson, Max Hipperson, Edward Kerr-Dineen, Isaac Langley, Emese Meder, Roman Gerasimov, Javier Sanjuan, and Manasvee Saraf. We are grateful to the CAHA, OSN and La Hita Observatory staffs. This research is partially based on observations collected at Centro Astronomico HispanoAleman (CAHA) at Calar Alto, operated jointly by Junta de Andalucia and Consejo Superior de Investigaciones Cientificas (IAA-CSIC). This research was also partially based on observation carried out at the Observatorio de Sierra Nevada (OSN) operated by Instituto de Astrofisica de Andalucia (CSIC). This article is also based on observations made with the Liverpool Telescope operated on the island of La Palma by Liverpool John Moores University in the Spanish Observatorio del Roque de los Muchachos of the Instituto de Astrofisica de Canarias with financial support from the UK Science and Technology Facilities Council. Partially based on observations made with the Tx40 and Excalibur telescopes at the Observatorio Astrofisico de Javalambre in Teruel, a Spanish Infraestructura Cientifico-Tecnica Singular (ICTS) owned, managed and operated by the Centro de Estudios de Fisica del Cosmos de Aragon (CEFCA). Tx40 and Excalibur are funded with the Fondos de Inversiones de Teruel (FITE). A.R.R. would like to thank Gustavo Roman for the mechanical adaptation of the camera to the telescope to allow for the observation to be recorded. R.H., J.F.R., S.P.H. and A.S.L. have been supported by the Spanish projects AYA2015-65041P and PID2019-109467GB-100 (MINECO/FEDER, UE) and Grupos Gobierno Vasco IT1366-19. Our great thanks to Omar Hila and their collaborators in Atlas Golf Marrakech Observatory for providing access to the T60cm telescope. TRAPPIST is a project funded by the Belgian Fonds (National) de la Recherche Scientifique (F.R.S.-FNRS) under grant PDR T.0120.21. TRAPPIST-North is a project funded by the University of Liege, and performed in collaboration with Cadi Ayyad University of Marrakesh. E.J. is a FNRS Senior Research Associate

10Kin1day: A Bottom-Up Neuroimaging Initiative.

We organized 10Kin1day, a pop-up scientific event with the goal to bring together neuroimaging groups from around the world to jointly analyze 10,000+ existing MRI connectivity datasets during a 3-day workshop. In this report, we describe the motivation and principles of 10Kin1day, together with a public release of 8,000+ MRI connectome maps of the human brain

The effects of temperature, soil moisture and UV radiation on biomarkers and energy reserves of the isopod Porcellionides pruinosus

Terrestrial isopods from the species Porcellionides pruinosus were exposed to different ranges of temperature, soil moisture content and doses of UV radiation. For the temperature and soil moisture content experiments, organisms were sampled after 48 h, 96 h and 14 days of exposure, whereas in the UV experiment, they were sampled at the end of the exposure periods, that consisted on a single-pulse with duration ranging from 30 min to 8 h. For each sampling time the acetylcholinesterase, glutathione S transferases, glutathione peroxidase and catalase activities were determined, as well as lipid peroxidation rate. Energy content (lipids, carbohydrates, proteins) and other energy related parameters: energy available, energy consumption and cellular energy allocation were also determined, along with mortality. The results obtained showed that increases in temperature will affect life traits and specific strategies for isopods to manage their energy budget, in order to handle oxidative stress. It also showed that this species is acclimated to lower moisture scenarios, whereas in case of flood scenarios the turnover point between optimal conditions and mortality is very narrow, which may lead to the local extinction of populations in specific micro-habitats. This study also showed that UV radiation also poses an important stressor for isopods that should be taken in consideration, as the actual doses nowadays present significant negative impact on these organisms. The study also emphasises that the effects of abiotic factors should be included and taken into consideration by policymakers and that the inclusion of abiotic effects in ecotoxicological tests should be included in the analysis of any stressor to improve chemical risk assessment