High-resolution spectroscopy of QY Sge -- An obscured RV Tauri variable?

The first high-resolution optical spectra of QY Sge are presented and discussed. Menzies & Whitelock (1988) on the basis of photometry and low-resolution spectra suggested that this G0I supergiant was obscured by dust and seen only by scattered light from a circumstellar reflection nebula. The new spectra confirm and extend this picture. Photospheric lines are unusually broad indicating scattering of photons from dust in the stellar wind. Presence of very broad Na D emission lines is confirmed. Sharp emission lines from low levels of abundant neutral metal atoms are reported for the first time. An abundance analysis of photospheric lines shows that the stellar atmosphere is of approximately solar composition but with highly condensible (e.g., Sc and Ti) elements depleted by factors of 5 to 10.Comment: 8 pages, 9 figures, accepted for publication in MNRA

Constraining the LRG Halo Occupation Distribution using Counts-in-Cylinders

The low number density of the Sloan Digital Sky Survey (SDSS) Luminous Red Galaxies (LRGs) suggests that LRGs occupying the same dark matter halo can be separated from pairs occupying distinct dark matter halos with high fidelity. We present a new technique, Counts-in-Cylinders (CiC), to constrain the parameters of the satellite contribution to the LRG Halo-Occupation Distribution (HOD). For a fiber collision-corrected SDSS spectroscopic LRG subsample at 0.16 < z < 0.36, we find the CiC multiplicity function is fit by a halo model where the average number of satellites in a halo of mass M is = ((M - Mcut)/M1)^alpha with Mcut = 5.0 +1.5/-1.3 (+2.9/-2.6) X 10^13 Msun, M1 = 4.95 +0.37/-0.26 (+0.79/-0.53) X 10^14 Msun, and alpha = 1.035 +0.10/-0.17 (+0.24/-0.31) at the 68% and 95% confidence levels using a WMAP3 cosmology and z=0.2 halo catalog. Our method tightly constrains the fraction of LRGs that are satellite galaxies, 6.36 +0.38/-0.39, and the combination Mcut/10^{14} Msun + alpha = 1.53 +0.08/-0.09 at the 95% confidence level. We also find that mocks based on a halo catalog produced by a spherical overdensity (SO) finder reproduce both the measured CiC multiplicity function and the projected correlation function, while mocks based on a Friends-of-Friends (FoF) halo catalog has a deficit of close pairs at ~1 Mpc/h separations. Because the CiC method relies on higher order statistics of close pairs, it is robust to the choice of halo finder. In a companion paper we will apply this technique to optimize Finger-of-God (FOG) compression to eliminate the 1-halo contribution to the LRG power spectrum.Comment: 40 pages, 9 figures, submitted to Astrophysical Journa

4098 galaxy clusters to z~0.6 in the Sloan Digital Sky Survey equatorial Stripe 82

We present a catalogue of 4098 photometrically selected galaxy clusters with a median redshift = 0.32 in the 270 square degree 'Stripe 82' region of the Sloan Digital Sky Survey (SDSS), covering the celestial equator in the Southern Galactic Cap (-50 < RA < 59 deg, |Dec| < 1.25 deg). Owing to the multi-epoch SDSS coverage of this region, the ugriz photometry is ~2 magnitudes deeper than single scans within the main SDSS footprint. We exploit this to detect clusters of galaxies using an algorithm that searches for statistically significant overdensities of galaxies in a Voronoi tessellation of the projected sky. 32% of the clusters have at least one member with a spectroscopic redshift from existing public data (SDSS Data Release 7, 2SLAQ & WiggleZ), and the remainder have a robust photometric redshift (accurate to ~5-9% at the median redshift of the sample). The weighted average of the member galaxies' redshifts provides a reasonably accurate estimate of the cluster redshift. The cluster catalogue is publicly available for exploitation by the community to pursue a range of science objectives. In addition to the cluster catalogue, we provide a linked catalogue of 18,295 V<21 mag quasar sight-lines with impact parameters within <3 Mpc of the cluster cores selected from the catalogue of Veron et al. (2010). The background quasars cover 0.25 < z < 2, where MgII absorption-line systems associated with the clusters are detectable in optical spectra.Comment: 10 pages, 2 figures, accepted for publication in MNRAS. Catalogues available at http://www.physics.mcgill.ca/~jimgeach/stripe8

The Pittsburgh Sloan Digital Sky Survey MgII Quasar Absorption-Line Survey Catalog

We present a catalog of intervening MgII quasar absorption-line systems in the redshift interval 0.36 <= z <= 2.28. The catalog was built from Sloan Digital Sky Survey Data Release Four (SDSS DR4) quasar spectra. Currently, the catalog contains > 17,000 measured MgII doublets. We also present data on the ~44,600 quasar spectra which were searched to construct the catalog, including redshift and magnitude information, continuum-normalized spectra, and corresponding arrays of redshift-dependent minimum rest equivalent widths detectable at our confidence threshold. The catalog is available on the web. A careful second search of 500 random spectra indicated that, for every 100 spectra searched, approximately one significant MgII system was accidentally rejected. Current plans to expand the catalog beyond DR4 quasars are discussed. Many MgII absorbers are known to be associated with galaxies. Therefore, the combination of large size and well understood statistics makes this catalog ideal for precision studies of the low-ionization and neutral gas regions associated with galaxies at low to moderate redshift. An analysis of the statistics of MgII absorbers using this catalog will be presented in a subsequent paper.Comment: AJ, in pres

Baryon Acoustic Oscillations in the Sloan Digital Sky Survey Data Release 7 Galaxy Sample

The spectroscopic Sloan Digital Sky Survey (SDSS) Data Release 7 (DR7) galaxy sample represents the final set of galaxies observed using the original SDSS target selection criteria. We analyse the clustering of galaxies within this sample, including both the Luminous Red Galaxy (LRG) and Main samples, and also include the 2-degree Field Galaxy Redshift Survey (2dFGRS) data. Baryon Acoustic Oscillations are observed in power spectra measured for different slices in redshift; this allows us to constrain the distance--redshift relation at multiple epochs. We achieve a distance measure at redshift z=0.275, of r_s(z_d)/D_V(0.275)=0.1390+/-0.0037 (2.7% accuracy), where r_s(z_d) is the comoving sound horizon at the baryon drag epoch, D_V(z)=[(1+z)^2D_A^2cz/H(z)]^(1/3), D_A(z) is the angular diameter distance and H(z) is the Hubble parameter. We find an almost independent constraint on the ratio of distances D_V(0.35)/D_V(0.2)=1.736+/-0.065, which is consistent at the 1.1sigma level with the best fit Lambda-CDM model obtained when combining our z=0.275 distance constraint with the WMAP 5-year data. The offset is similar to that found in previous analyses of the SDSS DR5 sample, but the discrepancy is now of lower significance, a change caused by a revised error analysis and a change in the methodology adopted, as well as the addition of more data. Using WMAP5 constraints on Omega_bh^2 and Omega_ch^2, and combining our BAO distance measurements with those from the Union Supernova sample, places a tight constraint on Omega_m=0.286+/-0.018 and H_0 = 68.2+/-2.2km/s/Mpc that is robust to allowing curvature and non-Lambda dark energy. This result is independent of the behaviour of dark energy at redshifts greater than those probed by the BAO and supernova measurements. (abridged)Comment: 22 pages, 16 figures, minor changes to match version published in MNRA

The Sloan Digital Sky Survey Quasar Catalog V. Seventh Data Release

We present the fifth edition of the Sloan Digital Sky Survey (SDSS) Quasar Catalog, which is based upon the SDSS Seventh Data Release. The catalog, which contains 105,783 spectroscopically confirmed quasars, represents the conclusion of the SDSS-I and SDSS-II quasar survey. The catalog consists of the SDSS objects that have luminosities larger than M_i = -22.0 (in a cosmology with H_0 = 70 km/s/Mpc Omega_M = 0.3, and Omega_Lambda = 0.7) have at least one emission line with FWHM larger than 1000 km/s or have interesting/complex absorption features, are fainter than i > 15.0 and have highly reliable redshifts. The catalog covers an area of 9380 deg^2. The quasar redshifts range from 0.065 to 5.46, with a median value of 1.49; the catalog includes 1248 quasars at redshifts greater than four, of which 56 are at redshifts greater than five. The catalog contains 9210 quasars with i < 18; slightly over half of the entries have i< 19. For each object the catalog presents positions accurate to better than 0.1" rms per coordinate, five-band (ugriz) CCD-based photometry with typical accuracy of 0.03 mag, and information on the morphology and selection method. The catalog also contains radio, near-infrared, and X-ray emission properties of the quasars, when available, from other large-area surveys. The calibrated digital spectra cover the wavelength region 3800-9200 Ang. at a spectral resolution R = 2000 the spectra can be retrieved from the SDSS public database using the information provided in the catalog. Over 96% of the objects in the catalog were discovered by the SDSS. We also include a supplemental list of an additional 207 quasars with SDSS spectra whose archive photometric information is incomplete.Comment: Accepted, to appear in AJ, 7 figures, electronic version of Table 2 is available, see http://www.sdss.org/dr7/products/value_added/qsocat_dr7.htm

Comparative RNA editing in autistic and neurotypical cerebella

Adenosine-to-inosine (A-to-I) RNA editing is a neurodevelopmentally regulated epigenetic modification shown to modulate complex behavior in animals. Little is known about human A-to-I editing, but it is thought to constitute one of many molecular mechanisms connecting environmental stimuli and behavioral outputs. Thus, comprehensive exploration of A-to-I RNA editing in human brains may shed light on gene–environment interactions underlying complex behavior in health and disease. Synaptic function is a main target of A-to-I editing, which can selectively recode key amino acids in synaptic genes, directly altering synaptic strength and duration in response to environmental signals. Here, we performed a high-resolution survey of synaptic A-to-I RNA editing in a human population, and examined how it varies in autism, a neurodevelopmental disorder in which synaptic abnormalities are a common finding. Using ultra-deep (>1000 × ) sequencing, we quantified the levels of A-to-I editing of 10 synaptic genes in postmortem cerebella from 14 neurotypical and 11 autistic individuals. A high dynamic range of editing levels was detected across individuals and editing sites, from 99.6% to below detection limits. In most sites, the extreme ends of the population editing distributions were individuals with autism. Editing was correlated with isoform usage, clusters of correlated sites were identified, and differential editing patterns examined. Finally, a dysfunctional form of the editing enzyme adenosine deaminase acting on RNA B1 was found more commonly in postmortem cerebella from individuals with autism. These results provide a population-level, high-resolution view of A-to-I RNA editing in human cerebella and suggest that A-to-I editing of synaptic genes may be informative for assessing the epigenetic risk for autism.Nancy Lurie Marks Family FoundationF. Hoffmann-La Roche & Co. (Applied Science Sequencing Grant Program)Autism Speaks (Organization)Simons FoundationNational Institutes of Health (U.S.) (Grant 1R01MH085143-01

Whole-genome sequencing to understand the genetic architecture of common gene expression and biomarker phenotypes.

Initial results from sequencing studies suggest that there are relatively few low-frequency (&lt;5%) variants associated with large effects on common phenotypes. We performed low-pass whole-genome sequencing in 680 individuals from the InCHIANTI study to test two primary hypotheses: (i) that sequencing would detect single low-frequency-large effect variants that explained similar amounts of phenotypic variance as single common variants, and (ii) that some common variant associations could be explained by low-frequency variants. We tested two sets of disease-related common phenotypes for which we had statistical power to detect large numbers of common variant-common phenotype associations-11 132 cis-gene expression traits in 450 individuals and 93 circulating biomarkers in all 680 individuals. From a total of 11 657 229 high-quality variants of which 6 129 221 and 5 528 008 were common and low frequency (&lt;5%), respectively, low frequency-large effect associations comprised 7% of detectable cis-gene expression traits [89 of 1314 cis-eQTLs at P &lt; 1 × 10(-06) (false discovery rate ∼5%)] and one of eight biomarker associations at P &lt; 8 × 10(-10). Very few (30 of 1232; 2%) common variant associations were fully explained by low-frequency variants. Our data show that whole-genome sequencing can identify low-frequency variants undetected by genotyping based approaches when sample sizes are sufficiently large to detect substantial numbers of common variant associations, and that common variant associations are rarely explained by single low-frequency variants of large effect

The SDSS-III Baryon Oscillation Spectroscopic Survey: Quasar Target Selection for Data Release Nine

The SDSS-III Baryon Oscillation Spectroscopic Survey (BOSS), a five-year spectroscopic survey of 10,000 deg^2, achieved first light in late 2009. One of the key goals of BOSS is to measure the signature of baryon acoustic oscillations in the distribution of Ly-alpha absorption from the spectra of a sample of ~150,000 z>2.2 quasars. Along with measuring the angular diameter distance at z\approx2.5, BOSS will provide the first direct measurement of the expansion rate of the Universe at z > 2. One of the biggest challenges in achieving this goal is an efficient target selection algorithm for quasars over 2.2 < z < 3.5, where their colors overlap those of stars. During the first year of the BOSS survey, quasar target selection methods were developed and tested to meet the requirement of delivering at least 15 quasars deg^-2 in this redshift range, out of 40 targets deg^-2. To achieve these surface densities, the magnitude limit of the quasar targets was set at g <= 22.0 or r<=21.85. While detection of the BAO signature in the Ly-alpha absorption in quasar spectra does not require a uniform target selection, many other astrophysical studies do. We therefore defined a uniformly-selected subsample of 20 targets deg^-2, for which the selection efficiency is just over 50%. This "CORE" subsample will be fixed for Years Two through Five of the survey. In this paper we describe the evolution and implementation of the BOSS quasar target selection algorithms during the first two years of BOSS operations. We analyze the spectra obtained during the first year. 11,263 new z>2.2 quasars were spectroscopically confirmed by BOSS. Our current algorithms select an average of 15 z > 2.2 quasars deg^-2 from 40 targets deg^-2 using single-epoch SDSS imaging. Multi-epoch optical data and data at other wavelengths can further improve the efficiency and completeness of BOSS quasar target selection. [Abridged]Comment: 33 pages, 26 figures, 12 tables and a whole bunch of quasars. Submitted to Ap