Seabed fluid flow-related processes: evidence and quantification based on high-resolution imaging techniques and GIS analyses

This work provides new insights on different aspects of seabed fluid flow processes based on seafloor observations. The methods used entirely rely on ROV-based high-resolution imaging and mapping techniques. Optical data are used to produce visual maps of the seafloor, in the form of geo-referenced video- and photo-mosaics, whereas acoustic techniques allow mapping the micro-bathymetry of the seabed, as well as the signal reflectivity of the sediment surface and of the water column. This work presents three case studies, about two sites of seabed fluid flow: the Menez Gwen hydrothermal vent on the MAR and the REGAB pockmark in the Lower Congo Basin. On the technical side, some of the high-resolution techniques used in this thesis are not commonly used by the marine scientific community. This is particularly the case for large-area photo-mosaics. Although the interest in mosaicking is growing, there are still no tools freely and readily available to scientists to routinely construct large-area photo-mosaics. Therefore, this work presents a MATLAB toolbox for large-area photo-mosaicking (LAPM toolbox), which was developed as part of this thesis

PAPARA(ZZ)I : An open-source software interface for annotating photographs of the deep-sea

PAPARA(ZZ)I is a lightweight and intuitive image annotation program developed for the study of benthic megafauna. It offers functionalities such as free, grid and random point annotation. Annotations may be made following existing classification schemes for marine biota and substrata or with the use of user defined, customised lists of keywords, which broadens the range of potential application of the software to other types of studies (e.g. marine litter distribution assessment). If Internet access is available, PAPARA(ZZ)I can also query and use standardised taxa names directly from the World Register of Marine Species (WoRMS). Program outputs include abundances, densities and size calculations per keyword (e.g. per taxon). These results are written into text files that can be imported into spreadsheet programs for further analyses. PAPARA(ZZ)I is open-source and is available at http://papara-zz-i.github.io. Compiled versions exist for most 64-bit operating systems: Windows, Mac OS X and Linux

Ocean Floor Observation and Bathymetry System (OFOBS): A new Towed Camera/Sonar System for Deep-Sea Habitat Surveys

Towed camera systems are commonly used to collect photo and video images of the deep seafloor for a wide variety of purposes, from pure exploratory research to the development of management plans. Ongoing technological developments are increasing the quantity and quality of data collected from the deep seafloor. Despite these improvements, the area of seafloor, which towed systems can survey, optically remains limited by the rapid attenuation of visible wavelengths within water. We present an overview of a new towed camera platform integrating additional acoustical devices: the ocean floor observation and bathymetry system (OFOBS). The towed system maintains continuous direct communication via fiber optic cable with a support vessel, operational at depths up to 6000 m. In addition to collecting seafloor photo and video data, OFOBS gathers sidescan data over a 100-m swath width. OFOBS functionality is further augmented by a forward looking sonar, used to aid in hazard avoidance and real-time course correction. Data collected during the first field deployments of OFOBS, at a range of seamounts on the Langseth Ridge/Gakkel Ridge intersection (86° N, 61° E) in the high Arctic in September 2016, are presented to demonstrate the functionality of the system. Collected from a location with near continuous ice cover, this explanatory data set highlights the advantages of the system for deep-sea survey work in environments currently difficult to access for the majority of subsurface research platforms

Variability of Marine Methane Bubble Emissions on the Clayoquot Slope, Offshore Vancouver Island, Between 2017 and 2021

Seabed methane gas emissions occur worldwide at cold seeps located along most continental margins. Fluxes of methane gas released from the seabed in the form of bubbles can be extremely variable even over short time intervals. Some factors controlling the variability are still poorly understood. Here, we report on the results of continuous long-term sonar monitoring of bubble emissions at a depth of 1,260 m on the Clayoquot Slope, northern Cascadia margin. With a total monitoring duration of 4 years and a sampling period of 1 h, this is by far the longest high temporal resolution monitoring of seabed methane gas release ever conducted. Our results provide evidence that the diurnal and semi-diurnal tides influence the timing of the onset and cessation of bubble emissions. However, gas emissions within the monitoring area are active more than 84% of the time, indicating that tides alone are not sufficient to make venting pause. We hypothesize that the gas fluxes are transient but generally sufficiently high to maintain ebullition independently of the tidally-induced bottom pressure variations. Results also show that the tides do not seem to modulate the vigor of active gas emissions

Observations of deep-sea fishes and mobile scavengers from the abyssal DISCOL experimental mining area

Industrial interest in deep-sea mineral extraction began decades ago and today it is at an all-time high, accelerated by global demand for metals. Several seafloor ecosystem disturbance experiments were performed beginning in the 1970’s, including the DISturbance and reCOLonization experiment (DISCOL) conducted in the Peru Basin in 1989. A large seafloor disturbance was created by repeatedly plowing the seafloor over an area of ~ 10.8 km2. Though a number of studies in abyssal mining regions have evaluated megafaunal biodiversity and ecosystem responses, few have included quantitative and detailed data on fishes or scavengers despite their ecological importance as top predators. We used towed camera transects and baited camera data to evaluate the fish community at the DISCOL site. The abyssal fish community was relatively diverse with 16 taxa dominated by Ipnops meadi. Fish density was lower in ploughed habitat during the several years following disturbance but thereafter increased over time in part due to changes in regional environmental conditions. 26 years post disturbance there were no differences in overall total fish densities between reference and experimental areas, but the dominant fish, I. meadi, still exhibited much lower densities in ploughed habitat suggesting only partial fish community recovery. The scavenging community was dominated by eelpouts (Pachycara spp), hermit crabs (Probeebei mirabilis) and shrimp. The large contribution of hermit crabs appears unique amongst abyssal scavenger studies worldwide. The abyssal fish community at DISCOL was similar to that in the more northerly Clarion Clipperton Zone, though some species have only been observed at DISCOL thus far. Also, further species level identifications are required to refine this assessment. Additional studies across the polymetallic nodule provinces of the Pacific are required to further evaluate the environmental drivers of fish density and diversity and species biogeographies, which will be important for the development of appropriate management plans aimed at minimizing human impact from deep-sea mining

Association of deep-sea incirrate octopods with manganese crusts and nodule fields in the Pacific Ocean

Incirrate octopods (those without fins) are among the larger megafauna inhabiting the benthic environments of all oceans, commonly in water depths down to about 3,000 m. They are known to protect and brood their eggs until the juveniles hatch, but to date there is little published information on octopod deep-sea life cycles and distribution. For this study, three manganese-crust and nodule-abundant regions of the deep Pacific were examined by remote operated-vehicle and towed camera surveys carried out between 2011 and 2016

Abyssal food-web model indicates faunal carbon flow recovery and impaired microbial loop 26 years after a sediment disturbance experiment

Due to the predicted future demand for critical metals, abyssal plains covered with polymetallic nodules are currently being prospected for deep-seabed mining. Deep-seabed mining will lead to significant sediment disturbance over large spatial scales and for extended periods of time. The environmental impact of a small-scale sediment disturbance was studied during the ‘DISturbance and reCOLonization’ (DISCOL) experiment in the Peru Basin in 1989 when 10.8 km2 of seafloor were ploughed with a plough harrow. Here, we present a detailed description of carbon-based food-web models constructed from various datasets collected in 2015, 26 years after the experiment. Detailed observations of the benthic food web were made at three distinct sites: inside 26-year old plough tracks (IPT, subjected to direct impact from ploughing), outside the plough tracks (OPT, exposed to settling of resuspended sediment), and at reference sites (REF, no impact). The observations were used to develop highly-resolved food-web models for each site that quantified the carbon (C) fluxes between biotic (ranging from prokaryotes to various functional groups in meio-, macro-, and megafauna) and abiotic (e.g. detritus) compartments. The model outputs were used to estimate total system throughput, i.e., the sum of all C flows in the food web (the ‘ecological size’ of the system), and microbial loop functioning, i.e., the C-cycling through the prokaryotic compartment for each site. Both the estimated total system throughput and the microbial loop cycling were significantly reduced (by 16% and 35%, respectively) inside the plough tracks compared to the other two sites. Site differences in modelled faunal respiration varied among the different faunal compartments. Overall, modelled faunal respiration appeared to have recovered to, or exceeded reference values after 26-years. The model results indicate that food-web functioning, and especially the microbial loop, have not recovered from the disturbance that was inflicted on the abyssal site 26 years ago

Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts

Sponges host a remarkable diversity of microbial symbionts, however, the benefit their microbes provide is rarely understood. Here, we describe two new sponge species from deep-sea asphalt seeps and show that they live in a nutritional symbiosis with methane-oxidizing (MOX) bacteria. Metagenomics and imaging analyses revealed unusually high amounts of MOX symbionts in hosts from a group previously assumed to have low microbial abundances. These symbionts belonged to the Marine Methylotrophic Group 2 clade. They are host-specific and likely vertically transmitted, based on their presence in sponge embryos and streamlined genomes, which lacked genes typical of related free-living MOX. Moreover, genes known to play a role in host–symbiont interactions, such as those that encode eukaryote-like proteins, were abundant and expressed. Methane assimilation by the symbionts was one of the most highly expressed metabolic pathways in the sponges. Molecular and stable carbon isotope patterns of lipids confirmed that methane-derived carbon was incorporated into the hosts. Our results revealed that two species of sponges, although distantly related, independently established highly specific, nutritional symbioses with two closely related methanotrophs. This convergence in symbiont acquisition underscores the strong selective advantage for these sponges in harboring MOX bacteria in the food-limited deep sea

Massive asphalt deposits, oil seepage, and gas venting support abundant chemosynthetic communities at the Campeche Knolls, southern Gulf of Mexico

Hydrocarbon seepage is a widespread process at the continental margins of the Gulf of Mexico. We used a multidisciplinary approach, including multibeam mapping and visual seafloor observations with different underwater vehicles to study the extent and character of complex hydrocarbon seepage in the Bay of Campeche, southern Gulf of Mexico. Our observations showed that seafloor asphalt deposits previously only known from the Chapopote Knoll also occur at numerous other knolls and ridges in water depths from 1230 to 3150 m. In particular the deeper sites (Chapopopte and Mictlan knolls) were characterized by asphalt deposits accompanied by extrusion of liquid oil in form of whips or sheets, and in some places (Tsanyao Yang, Mictlan, and Chapopote knolls) by gas emission and the presence of gas hydrates in addition. Molecular and stable carbon isotopic compositions of gaseous hydrocarbons suggest their primarily thermogenic origin. Relatively fresh asphalt structures were settled by chemosynthetic communities including bacterial mats and vestimentiferan tube worms, whereas older flows appeared largely inert and devoid of corals and anemones at the deep sites. The gas hydrates at Tsanyao Yang and Mictlan Knolls were covered by a 5-to-10 cm-thick reaction zone composed of authigenic carbonates, detritus, and microbial mats, and were densely colonized by 1–2 m-long tube worms, bivalves, snails, and shrimps. This study increased knowledge on the occurrences and dimensions of asphalt fields and associated gas hydrates at the Campeche Knolls. The extent of all discovered seepage structure areas indicates that emission of complex hydrocarbons is a widespread, thus important feature of the southern Gulf of Mexico