Notes on Lagothrix flavicauda (Primates: Atelidae): oldest known specimen and the importance of the revisions of museum specimens

The yellow-tailed woolly monkey, Lagothrix flavicauda (Humboldt, 1812), is a large atelid endemic to the cloud forests of Peru. The identity of this species was uncertain for at least 150 years, since its original description in 1812 without a voucher specimen. Additionally, the absence of expeditions to the remote Peruvian cloud forests made it impossible to collect material that would help to confirm the true identity of L. flavicauda during the 19th and first half of the 20th century. Until now, the specimens of L. flavicauda collected by H. Watkins, in 1925, in La Lejía (Amazonas, Peru) were thought to be the oldest ones deposited in any scientific collection. Nevertheless, after reviewing the databases of the several international museums and literature, we found one specimen of L. flavicauda deposited at the Muséum National d’histoire Naturelle (Paris, France) collected in 1900 by G.A. Baër, in the most eastern part of San Martín (Peru), where the presence of this species was not confirmed until 2011. Thus, Baër’s specimen represents the oldest known specimen of the yellow-tailed woolly monkey and the only one coming from the eastern part of the species’ distribution. Finally, we highlight the importance of online scientific databases for easily diagnosable species. However, caution needs to be taken when using them. We also discuss the value of scientific collections as sources of new discoveries

Closed form solutions to water pollution problems using auto-BäcklundTransformations

Air pollution can be very harmful to human health, especially in urban areas of large cities and in the vicinity of chemical industries. In order to prevent and minimize environmental impacts from these industries, it is necessary to use mathematical models, which can simulate scenarios associated with dispersion of pollutants. This work presents a new analytical method for solving pollutant dispersion problems. The method uses two first-order differential restrictions from which are found auto-Bäcklund transformations for the two-dimensional advection-diffusion equation at steady state. The main characteristic of the formulation is the reduced time required to obtain analytical solutions

Agile data : automating database refactorings

This paper discusses an automated approach to database change management throughout the companies’ development workflow. By using automated tools, companies can avoid common issues related to manual database deployments. This work was motivated by analyzing usual problems within organizations, mostly originated from manual interventions that may result in systems disruptions and production incidents. In addition to practices of continuous integration and continuous delivery, the current paper describes a case study in which a suggested pipeline is implemented in order to reduce the deployment times and decrease incidents due to ineffective data controlling

Evidence from Cochrane systematic reviews for the dissemination control of the COVID-19 infection

Introduction: The COVID-19 infection has high transmissibility and several measures have been adopted for dissemination control. Objective: To identify and summarize the evidence from the Cochrane systematic reviews (SR) on measures to control the dissemination of the COVID-19 infection. Study design: This review of Cochrane SR has carried out in the Division of Vascular and Endovascular Surgery and in the Division of Emergency Medicine and Evidence-Based Medicine of the Universidade Federal de São Paulo, Brazil. Methods: A comprehensive search in the Cochrane Database of Systematic Reviews retrieved all Cochrane SR directly related to control measures for the COVID-19 dissemination. The main characteristics and results of all included SR were summarized and discussed. Results: Three Cochrane SRs were included in the qualitative synthesis and they evaluated populational and individual measures to control the dissemination of COVID-19. Conclusion: Low-certainty evidence show that quarantine of people exposed to those confirmed or suspected COVID-19 cases prevented 44% - 81% of incident cases and 31% - 63% of deaths compared to no measures and as sooner the quarantine measures are implemented, greater costs are saved. High-confidence evidence showed that clear communication about infection control and prevention guidelines was vital to its implementation. Low-certainty evidence showed that people with a long gown had less contamination than those with a coverall, and the coverall was more difficult to doff. Other SRs are desirable for controlling the dissemination of the COVID-19 infection

Simulação de cenários de uso do solo na bacia hidrográfica do rio Araranguá utilizando a técnica da modelagem hidrológica

The objective of this research was to apply the hydrological model SWAT under different soil use scenarios to evaluate water availability through space and time in the Araranguá watershed. The scenarios evaluated were: I) Current soil use, that is, mostly rice cultivation in paddy fields; II) Agriculture land replacement by forestry; and III) Agricultural land replacement by bare soil. The results obtained indicate that SWAT was efficient in modeling water distribution in the Araranguá basin. Moreover, it was verified that the average daily flow of water in the Araranguábasin occurred in the bare soil scenario. These results are supported by the reduced water infiltration and increased runoff verified in this scenario. Nevertheless, the bare soil scenario presented the highest number of days in which the estimated daily water flow (Qsim) of the basin was below the actual minimum flow through 95% of the time (Q95). The forestry scenario, in its turn, presented the lowest occurrence of Qsim < Q95 events, suggesting it may support a more stabilized water flow in the Araranguá basin throughout the year.Este trabalho teve como objetivos aplicar o modelo hidrológico SWAT (Soil and Water Assessment Tool) à bacia hidrográfica do Rio Araranguá e avaliar, por meio de cenários, a influência das atividades agrícolas sobre a distribuição espacial e temporal da disponibilidade hídrica da área estudada. Os cenários estudados foram: I) uso atual, com predominância da rizicultura nas áreas agrícolas; II) substituição da agricultura por reflorestamento; e III) remoção da cobertura vegetal das áreas agrícolas. Os resultados demonstraram a eficiência do modelo em representar o regime hidrológico da área estudada. Além disso, pode-se verificar que a vazão média diária anual foi maior no cenário com solo exposto, sendo esse aumento atribuído à redução da infiltração de água no solo e ao aumento do escoamento superficial. Entretanto, apesar desses resultados, o número de dias em que a vazão diária simulada (Qsim) permaneceu abaixo da mínima observada em 95% do tempo (Q95) foi maior nesse cenário. O cenário com reflorestamento apresentou a menor ocorrência de Qsim < Q95, sugerindo maior regularização de vazão ao longo do ano

Systematics, biogeography, and diversification of Scytalopus tapaculos (Rhinocryptidae), an enigmatic radiation of Neotropical montane birds

Copyright © American Ornithological Society 2020. All rights reserved. For permissions, e-mail: [email protected]. We studied the phylogeny, biogeography, and diversification of suboscine passerines in the genus Scytalopus (Rhinocryptidae), a widespread, species-rich, and taxonomically challenging group of Neotropical birds. We analyzed nuclear (exons, regions flanking ultraconserved elements) and mitochondrial (ND2) DNA sequence data for a taxonomically and geographically comprehensive sample of specimens collected from Costa Rica to Patagonia and Brazil. We found that Scytalopus is a monophyletic group sister to Eugralla and consists of 3 main clades roughly distributed in (1) the Southern Andes, (2) eastern Brazil, and (3) the Tropical Andes and Central America. The clades from the Southern Andes and eastern Brazil are sister to each other. Despite their confusing uniformity in plumage coloration, body shape, and overall appearance, rates of species accumulation through time in Scytalopus since the origin of the clade in the Late Miocene are unusually high compared with those of other birds, suggesting rapid non-adaptive diversification in the group. We attribute this to their limited dispersal abilities making them speciation-prone and their occurrence in a complex landscape with numerous barriers promoting allopatric differentiation. Divergence times among species and downturns in species accumulation rates in recent times suggest that most speciation events in Scytalopus predate climatic oscillations of the Pleistocene. Our analyses identified various cases of strong genetic structure within species and lack of monophyly of taxa, flagging populations which likely merit additional study to clarify their taxonomic status. In particular, detailed analyses of species limits are due in S. parvirostris, S. latrans, S. speluncae, the S. atratus complex, and the Southern Andes clade

Annotated checklist of the birds of Brazil by the Brazilian Ornithological Records Committee-second edition

An updated version of the checklist of birds of Brazil is presented, along with a summary of the changes approved by the Brazilian Ornithological Records Committee's Taxonomy Subcommittee since the first edition, published in 2015. In total, 1971 bird species occurring in Brazil are supported by documentary evidence and are admitted to the Primary List, 4.3% more than in the previous edition. Eleven additional species are known only from undocumented records (Secondary List). For each species on the Primary List, status of occurrence in the country is provided and, in the case of polytypic species, the respective subspecies present in Brazilian territory are listed. Explanatory notes cover taxonomic changes, nomenclatural corrections, new occurrences, and other changes implemented since the last edition. Ninety species are added to the Primary List as a result of species descriptions, new occurrences, taxonomic splits, and transfers from the Secondary List due to the availability of documentation. In contrast, eight species are synonymized or assigned subspecific status and thus removed from the Primary List. In all, 293 species are endemic to Brazil, ranked third among the countries with the highest rate of bird endemism. The Brazilian avifauna currently consists of 1742 residents or breeding migrants, 126 seasonal non-breeding visitors, and 103 vagrants. The category of vagrants showed the greatest increase (56%) compared to the previous list, mainly due to new occurrences documented in recent years by citizen scientists. The list updates the diversity, systematics, taxonomy, scientific and vernacular nomenclature, and occurrence status of birds in Brazil.Peer reviewe

Anatomy and evolution of telomeric and subtelomeric regions in the human protozoan parasite Trypanosoma cruzi

Background: the subtelomeres of many protozoa are highly enriched in genes with roles in niche adaptation. T. cruzi trypomastigotes express surface proteins from Trans-Sialidase (TS) and Dispersed Gene Family-1 (DGF-1) superfamilies which are implicated in host cell invasion. Single populations of T. cruzi may express different antigenic forms of TSs. Analysis of TS genes located at the telomeres suggests that chromosome ends could have been the sites where new TS variants were generated. the aim of this study is to characterize telomeric and subtelomeric regions of T. cruzi available in TriTrypDB and connect the sequences of telomeres to T. cruzi working draft sequence.Results: We first identified contigs carrying the telomeric repeat (TTAGGG). of 49 contigs identified, 45 have telomeric repeats at one end, whereas in four contigs the repeats are located internally. All contigs display a conserved telomeric junction sequence adjacent to the hexamer repeats which represents a signature of T. cruzi chromosome ends. We found that 40 telomeric contigs are located on T. cruzi chromosome-sized scaffolds. in addition, we were able to map several telomeric ends to the chromosomal bands separated by pulsed-field gel electrophoresis. the subtelomeric sequence structure varies widely, mainly as a result of large differences in the relative abundance and organization of genes encoding surface proteins (TS and DGF-1), retrotransposon hot spot genes (RHS), retrotransposon elements, RNA-helicase and N-acetyltransferase genes. While the subtelomeric regions are enriched in pseudogenes, they also contain complete gene sequences matching both known and unknown expressed genes, indicating that these regions do not consist of nonfunctional DNA but are instead functional parts of the expressed genome. the size of the subtelomeric regions varies from 5 to 182 kb; the smaller of these regions could have been generated by a recent chromosome breakage and telomere healing event.Conclusions: the lack of synteny in the subtelomeric regions suggests that genes located in these regions are subject to recombination, which increases their variability, even among homologous chromosomes. the presence of typical subtelomeric genes can increase the chance of homologous recombination mechanisms or microhomology-mediated end joining, which may use these regions for the pairing and recombination of free ends.Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Universidade Federal de São Paulo, Escola Paulista Med, Dept Microbiol Imunol & Parasitol, São Paulo, BrazilFIOCRUZ MG, Ctr Pesquisas Rene Rachou, Belo Horizonte, MG, BrazilUniv Fed Minas Gerais, ICB, Dept Parasitol, Belo Horizonte, MG, BrazilUCLA, Barquisimeto, VenezuelaFdn Inst Estudios Avanzados IDEA, Caracas, VenezuelaUniversidade Federal de São Paulo, Escola Paulista Med, Dept Microbiol Imunol & Parasitol, São Paulo, BrazilWeb of Scienc

Effects of Brazil's political crisis on the science needed for biodiversity conservation

The effects of Brazil’s political crisis on science funding necessary for biodiversity conservation are likely to be global. Brazil is not only the world’s most biodiverse nation, it is responsible for the greater part of the Amazon forest, which regulates the climate and provides rain to much of southern South America. Brazil was a world leader in satellite monitoring of land-use change, in-situ biodiversity monitoring, reduction in tropical-forest deforestation, protection of indigenous lands, and a model for other developing nations. Coordinated public responses will be necessary to prevent special-interest groups from using the political crisis to weaken science funding, environmental legislation and law enforcement. Keywords: Brazil, biodiversity, climate change, governance, fundin

Lista comentada das aves do Brasil pelo comite Brasileiro de registros ornitologicos

Since 2005, the Brazilian Ornithological Records Committee (CBRO) has published updated checklists of Brazilian birds almost every year. Herein, we present a completely new and annotated version of our checklist. For the first time, we list all bird subspecies known from Brazil that are currently accepted by at least one key ornithological reference work. The inclusion of the subspecies should be seen as a synthesis, and not as a taxonomic endorsement. As such, we include in the new checklist 1919 avian species, 910 of which are treated as polytypic in reference works (2042 subspecies), totaling 3051 taxa at the species and subspecies level. We anticipate that several of the subspecies included in our list may be subject to future taxonomic upgrades to species status, while others will probably be shown to be invalid in the light of future taxonomic studies. The results highlight Brazil as a megadiverse country and reinforce the need for proper enforcement of political tools, laws and international commitments assumed by the country to preserve its biodiversity. © 2015, Sociedade Brasileira de Ornitologia. All rights reserved