Non-deforestation fire vs. fossil fuel combustion: the source of CO₂ emissions affects the global carbon cycle and climate responses

Non-deforestation fire – i.e., fire that is typically followed by the recovery of natural vegetation – is arguably the most influential disturbance in terrestrial ecosystems, thereby playing a major role in carbon exchanges and affecting many climatic processes. The radiative effect from a given atmospheric CO2 perturbation is the same for fire and fossil fuel combustion. However, major differences exist per unit of CO2 emitted between the effects of non-deforestation fire vs. fossil fuel combustion on the global carbon cycle and climate, because (1) fossil fuel combustion implies a net transfer of carbon from geological reservoirs to the atmospheric, oceanic, and terrestrial pools, whereas fire occurring in terrestrial ecosystems does not; (2) the average lifetime of the atmospheric CO2 increase is longer when originating from fossil fuel combustion compared to fire, due to the strong vegetation regrowth following fire disturbances in terrestrial ecosystems; and (3) other impacts, for example on land surface albedo, also differ between fire and fossil fuel combustion. The main purpose of this study is to illustrate the consequences from these fundamental differences between fossil fuel combustion and non-deforestation fires using 1000-year simulations of a coupled climate–carbon model with interactive vegetation. We assessed emissions from both pulse and stable fire regime changes, considering both the gross (carbon released from combustion) and net (fire-caused change in land carbon, also accounting for vegetation decomposition and regrowth, as well as climate–carbon feedbacks) fire CO2 emissions. In all cases, we found substantial differences from equivalent amounts of emissions produced by fossil fuel combustion. These findings suggest that side-by-side comparisons of non-deforestation fire and fossil fuel CO2 emissions – implicitly implying that they have similar effects per unit of CO2 emitted – should therefore be avoided, particularly when these comparisons involve gross fire emissions, because the reservoirs from which these emissions are drawn have very different residence times (millions of years for fossil fuel; years to centuries for vegetation and soil–litter). Our results also support the notion that most net emissions occur relatively soon after fire regime shifts and then progressively approach zero. Overall, our study calls for the explicit representation of fire activity as a valuable step to foster a more accurate understanding of its impacts on global carbon cycling and temperature, as opposed to conceiving fire effects as congruent with the consequences from fossil fuel combustion

Non-deforestation fire vs. fossil fuel combustion: the source of CO2 emissions affects the global carbon cycle and climate responses

Non-deforestation fire – i.e., fire that is typically followed by the recovery of natural vegetation – is arguably the most influential disturbance in terrestrial ecosystems, thereby playing a major role in carbon exchanges and affecting many climatic processes. The radiative effect from a given atmospheric CO2 perturbation is the same for fire and fossil fuel combustion. However, major differences exist per unit of CO2 emitted between the effects of non-deforestation fire vs. fossil fuel combustion on the global carbon cycle and climate, because (1) fossil fuel combustion implies a net transfer of carbon from geological reservoirs to the atmospheric, oceanic, and terrestrial pools, whereas fire occurring in terrestrial ecosystems does not; (2) the average lifetime of the atmospheric CO2 increase is longer when originating from fossil fuel combustion compared to fire, due to the strong vegetation regrowth following fire disturbances in terrestrial ecosystems; and (3) other impacts, for example on land surface albedo, also differ between fire and fossil fuel combustion. The main purpose of this study is to illustrate the consequences from these fundamental differences between fossil fuel combustion and non-deforestation fires using 1000-year simulations of a coupled climate–carbon model with interactive vegetation. We assessed emissions from both pulse and stable fire regime changes, considering both the gross (carbon released from combustion) and net (fire-caused change in land carbon, also accounting for vegetation decomposition and regrowth, as well as climate–carbon feedbacks) fire CO2 emissions. In all cases, we found substantial differences from equivalent amounts of emissions produced by fossil fuel combustion. These findings suggest that side-by-side comparisons of non-deforestation fire and fossil fuel CO2 emissions – implicitly implying that they have similar effects per unit of CO2 emitted – should therefore be avoided, particularly when these comparisons involve gross fire emissions, because the reservoirs from which these emissions are drawn have very different residence times (millions of years for fossil fuel; years to centuries for vegetation and soil–litter). Our results also support the notion that most net emissions occur relatively soon after fire regime shifts and then progressively approach zero. Overall, our study calls for the explicit representation of fire activity as a valuable step to foster a more accurate understanding of its impacts on global carbon cycling and temperature, as opposed to conceiving fire effects as congruent with the consequences from fossil fuel combustion

Detection, characterization and regulation of antisense transcripts in HIV-1

© 2007 Landry et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution Licens

HTLV-I antisense transcripts initiating in the 3'LTR are alternatively spliced and polyadenylated

BACKGROUND: Antisense transcription in retroviruses has been suggested for both HIV-1 and HTLV-I, although the existence and coding potential of these transcripts remain controversial. Thorough characterization is required to demonstrate the existence of these transcripts and gain insight into their role in retrovirus biology. RESULTS: This report provides the first complete characterization of an antisense retroviral transcript that encodes the previously described HTLV-I HBZ protein. In this study, we show that HBZ-encoding transcripts initiate in the 3' long terminal repeat (LTR) at several positions and consist of two alternatively spliced variants (SP1 and SP2). Expression of the most abundant HBZ spliced variant (SP1) could be detected in different HTLV-I-infected cell lines and importantly in cellular clones isolated from HTLV-I-infected patients. Polyadenylation of HBZ RNA occurred at a distance of 1450 nucleotides downstream of the HBZ stop codon in close proximity of a typical polyA signal. We have also determined that translation mostly initiates from the first exon located in the 3' LTR and that the HBZ isoform produced from the SP1 spliced variant demonstrated inhibition of Tax and c-Jun-dependent transcriptional activation. CONCLUSION: These results conclusively demonstrate the existence of antisense transcription in retroviruses, which likely plays a role in HTLV-I-associated pathogenesis through HBZ protein synthesis

Developmental Stability: A Major Role for Cyclin G in Drosophila melanogaster

Morphological consistency in metazoans is remarkable given the pervasive occurrence of genetic variation, environmental effects, and developmental noise. Developmental stability, the ability to reduce developmental noise, is a fundamental property of multicellular organisms, yet its genetic bases remains elusive. Imperfect bilateral symmetry, or fluctuating asymmetry, is commonly used to estimate developmental stability. We observed that Drosophila melanogaster overexpressing Cyclin G (CycG) exhibit wing asymmetry clearly detectable by sight. Quantification of wing size and shape using geometric morphometrics reveals that this asymmetry is a genuine—but extreme—fluctuating asymmetry. Overexpression of CycG indeed leads to a 40-fold increase of wing fluctuating asymmetry, which is an unprecedented effect, for any organ and in any animal model, either in wild populations or mutants. This asymmetry effect is not restricted to wings, since femur length is affected as well. Inactivating CycG by RNAi also induces fluctuating asymmetry but to a lesser extent. Investigating the cellular bases of the phenotypic effects of CycG deregulation, we found that misregulation of cell size is predominant in asymmetric flies. In particular, the tight negative correlation between cell size and cell number observed in wild-type flies is impaired when CycG is upregulated. Our results highlight the role of CycG in the control of developmental stability in D. melanogaster. Furthermore, they show that wing developmental stability is normally ensured via compensatory processes between cell growth and cell proliferation. We discuss the possible role of CycG as a hub in a genetic network that controls developmental stability

Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a–b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016