Neuron dynamics in the presence of 1/f noise

Interest in understanding the interplay between noise and the response of a non-linear device cuts across disciplinary boundaries. It is as relevant for unmasking the dynamics of neurons in noisy environments as it is for designing reliable nanoscale logic circuit elements and sensors. Most studies of noise in non-linear devices are limited to either time-correlated noise with a Lorentzian spectrum (of which the white noise is a limiting case) or just white noise. We use analytical theory and numerical simulations to study the impact of the more ubiquitous "natural" noise with a 1/f frequency spectrum. Specifically, we study the impact of the 1/f noise on a leaky integrate and fire model of a neuron. The impact of noise is considered on two quantities of interest to neuron function: The spike count Fano factor and the speed of neuron response to a small step-like stimulus. For the perfect (non-leaky) integrate and fire model, we show that the Fano factor can be expressed as an integral over noise spectrum weighted by a (low pass) filter function. This result elucidates the connection between low frequency noise and disorder in neuron dynamics. We compare our results to experimental data of single neurons in vivo, and show how the 1/f noise model provides much better agreement than the usual approximations based on Lorentzian noise. The low frequency noise, however, complicates the case for information coding scheme based on interspike intervals by introducing variability in the neuron response time. On a positive note, the neuron response time to a step stimulus is, remarkably, nearly optimal in the presence of 1/f noise. An explanation of this effect elucidates how the brain can take advantage of noise to prime a subset of the neurons to respond almost instantly to sudden stimuli.Comment: Phys. Rev. E in pres

Strings from Feynman Graph counting : without large N

A well-known connection between n strings winding around a circle and permutations of n objects plays a fundamental role in the string theory of large N two dimensional Yang Mills theory and elsewhere in topological and physical string theories. Basic questions in the enumeration of Feynman graphs can be expressed elegantly in terms of permutation groups. We show that these permutation techniques for Feynman graph enumeration, along with the Burnside counting lemma, lead to equalities between counting problems of Feynman graphs in scalar field theories and Quantum Electrodynamics with the counting of amplitudes in a string theory with torus or cylinder target space. This string theory arises in the large N expansion of two dimensional Yang Mills and is closely related to lattice gauge theory with S_n gauge group. We collect and extend results on generating functions for Feynman graph counting, which connect directly with the string picture. We propose that the connection between string combinatorics and permutations has implications for QFT-string dualities, beyond the framework of large N gauge theory.Comment: 55 pages + 10 pages Appendices, 23 figures ; version 2 - typos correcte

Tumor Response to Radiotherapy is Dependent on Genotype-Associated Mechanisms in vitro and in vivo

Background: We have previously shown that in vitro radiosensitivity of human tumor cells segregate non-randomly into a limited number of groups. Each group associates with a specific genotype. However we have also shown that abrogation of a single gene (p21) in a human tumor cell unexpectedly sensitized xenograft tumors comprised of these cells to radiotherapy while not affecting in vitro cellular radiosensitivity. Therefore in vitro assays alone cannot predict tumor response to radiotherapy. In the current work, we measure in vitro radiosensitivity and in vivo response of their xenograft tumors in a series of human tumor lines that represent the range of radiosensitivity observed in human tumor cells. We also measure response of their xenograft tumors to different radiotherapy protocols. We reduce these data into a simple analytical structure that defines the relationship between tumor response and total dose based on two coefficients that are specific to tumor cell genotype, fraction size and total dose. Methods: We assayed in vitro survival patterns in eight tumor cell lines that vary in cellular radiosensitivity and genotype. We also measured response of their xenograft tumors to four radiotherapy protocols: 8 × 2 Gy; 2 × 5Gy, 1 × 7.5 Gy and 1 × 15 Gy. We analyze these data to derive coefficients that describe both in vitro and in vivo responses. Results: Response of xenografts comprised of human tumor cells to different radiotherapy protocols can be reduced to only two coefficients that represent 1) total cells killed as measured in vitro 2) additional response in vivo not predicted by cell killing. These coefficients segregate with specific genotypes including those most frequently observed in human tumors in the clinic. Coefficients that describe in vitro and in vivo mechanisms can predict tumor response to any radiation protocol based on tumor cell genotype, fraction-size and total dose. Conclusions: We establish an analytical structure that predicts tumor response to radiotherapy based on coefficients that represent in vitro and in vivo responses. Both coefficients are dependent on tumor cell genotype and fraction-size. We identify a novel previously unreported mechanism that sensitizes tumors in vivo; this sensitization varies with tumor cell genotype and fraction size

Searching for New Physics Through AMO Precision Measurements

We briefly review recent experiments in atomic, molecular, and optical physics using precision measurements to search for physics beyond the Standard Model. We consider three main categories of experiments: searches for changes in fundamental constants, measurements of the anomalous magnetic moment of the electron, and searches for an electric dipole moment of the electron.Comment: Prepared for Comments on AMO Physics at Physica Script

シェアビジネスにおけるSNSの信頼性に関する研究-シェアビジネスの先端事例ケーススタディとSNSの信頼性の影響に関する実証分析

Otaru University of Commerce（小樽商科大学）博士（商学）doctoralcours

Counting and construction of holomorphic primary fields in free CFT4 from rings of functions on Calabi-Yau orbifolds

SCOAP

Epidermal Growth Factor Receptor Inhibition Modulates the Microenvironment by Vascular Normalization to Improve Chemotherapy and Radiotherapy Efficacy

Background: Epidermal growth factor receptor (EGFR) inhibitors have shown only modest clinical activity when used as single agents to treat cancers. They decrease tumor cell expression of hypoxia-inducible factor 1-a (HIF-1a) and vascular endothelial growth factor (VEGF). Hypothesizing that this might normalize tumor vasculature, we examined the effects of the EGFR inhibitor erlotinib on tumor vascular function, tumor microenvironment (TME) and chemotherapy and radiotherapy sensitivity. Methodology/Principal Findings: Erlotinib treatment of human tumor cells in vitro and mice bearing xenografts in vivo led to decreased HIF-1a and VEGF expression. Treatment altered xenograft vessel morphology assessed by confocal microscopy (following tomato lectin injection) and decreased vessel permeability (measured by Evan’s blue extravasation), suggesting vascular normalization. Erlotinib increased tumor blood flow measured by Power Doppler ultrasound and decreased hypoxia measured by EF5 immunohistochemistry and tumor O2 saturation measured by optical spectroscopy. Predictin

Transit Photometry as an Exoplanet Discovery Method

Photometry with the transit method has arguably been the most successful exoplanet discovery method to date. A short overview about the rise of that method to its present status is given. The method's strength is the rich set of parameters that can be obtained from transiting planets, in particular in combination with radial velocity observations; the basic principles of these parameters are given. The method has however also drawbacks, which are the low probability that transits appear in randomly oriented planet systems, and the presence of astrophysical phenomena that may mimic transits and give rise to false detection positives. In the second part we outline the main factors that determine the design of transit surveys, such as the size of the survey sample, the temporal coverage, the detection precision, the sample brightness and the methods to extract transit events from observed light curves. Lastly, an overview over past, current and future transit surveys is given. For these surveys we indicate their basic instrument configuration and their planet catch, including the ranges of planet sizes and stellar magnitudes that were encountered. Current and future transit detection experiments concentrate primarily on bright or special targets, and we expect that the transit method remains a principal driver of exoplanet science, through new discoveries to be made and through the development of new generations of instruments.Comment: Review chapte

Mass-loss rates for transiting exoplanets

Exoplanets at small orbital distances from their host stars are submitted to intense levels of energetic radiations, X-rays and extreme ultraviolet (EUV). Depending on the masses and densities of the planets and on the atmospheric heating efficiencies, the stellar energetic inputs can lead to atmospheric mass loss. These evaporation processes are observable in the ultraviolet during planetary transits. The aim of the present work is to quantify the mass-loss rates (dm/dt), heating efficiencies (eta), and lifetimes for the whole sample of transiting exoplanets, now including hot jupiters, hot neptunes, and hot super-earths. The mass-loss rates and lifetimes are estimated from an "energy diagram" for exoplanets, which compares the planet gravitational potential energy to the stellar X/EUV energy deposited in the atmosphere. We estimate the mass-loss rates of all detected transiting planets to be within 10^6 to 10^13 g/s for various conservative assumptions. High heating efficiencies would imply that hot exoplanets such the gas giants WASP-12b and WASP-17b could be completely evaporated within 1 Gyr. We further show that the heating efficiency can be constrained when dm/dt is inferred from observations and the stellar X/EUV luminosity is known. This leads us to suggest that eta ~ 100% in the atmosphere of the hot jupiter HD209458b, while it could be lower for HD189733b. Simultaneous observations of transits in the ultraviolet and X-rays are necessary to further constrain the exospheric properties of exoplanets.Comment: 10 pages, 5 figures, 2 tables. Accepted for publication in Astronomy & Astrophysic

Kepler observations of variability in B-type stars

The analysis of the light curves of 48 B-type stars observed by Kepler is presented. Among these are 15 pulsating stars, all of which show low frequencies characteristic of SPB stars. Seven of these stars also show a few weak, isolated high frequencies and they could be considered as SPB/beta Cep hybrids. In all cases the frequency spectra are quite different from what is seen from ground-based observations. We suggest that this is because most of the low frequencies are modes of high degree which are predicted to be unstable in models of mid-B stars. We find that there are non-pulsating stars within the beta Cep and SPB instability strips. Apart from the pulsating stars, we can identify stars with frequency groupings similar to what is seen in Be stars but which are not Be stars. The origin of the groupings is not clear, but may be related to rotation. We find periodic variations in other stars which we attribute to proximity effects in binary systems or possibly rotational modulation. We find no evidence for pulsating stars between the cool edge of the SPB and the hot edge of the delta Sct instability strips. None of the stars show the broad features which can be attributed to stochastically-excited modes as recently proposed. Among our sample of B stars are two chemically peculiar stars, one of which is a HgMn star showing rotational modulation in the light curve.Comment: 19 pages, 11 figures, 4 table