Beta diversity of diatom species and ecological guilds : Response to environmental and spatial mechanisms along the stream watercourse

1. Understanding the mechanisms that drive beta diversity (i.e. beta-diversity), an important aspect of regional biodiversity, remains a priority for ecological research. beta-diversity and its components can provide insights into the processes generating regional biodiversity patterns. We tested whether environmental filtering or dispersal related processes predominated along the stream watercourse by analysing the responses of taxonomic and functional diatom beta-diversity to environmental and spatial factors. 2. We examined the variation in total beta-diversity and its components (turnover and nestedness) in benthic diatom species and ecological guilds (motile, planktonic, low-and high profile) with respect to watercourse position (up-, mid-and downstream) in 2,182 sites throughout France. We tested the effects of pure environmental and pure spatial factors on beta-diversity with partial Mantel tests. Environmental factors included eight physicochemical variables, while geographical distances between sites were used as spatial factors. We also correlated a and c-diversity, and the degree of nestedness (NODF metric) with environmental variables. 3. Total beta-diversity and its turnover component displayed higher values upstream than mid-and downstream. The nestedness component exhibited low values, even when NODF values increased from up-to downstream. Pure environmental factors were highly significant for explaining total beta-diversity and turnover regardless of watercourse position, but pure spatial factors were mostly significant mid-and downstream, with geographical distance being positively correlated with beta-diversity. Across sites, nutrient enrichment decreased turnover but increased the degree of nestedness. Motile and low profile diatoms comprised the most abundant guilds, but their beta-diversity patterns varied in an opposite way. The lowest guild beta-diversity was observed upstream for low profile species, and downstream for motile species. 4. In conclusion, environmental filtering seemed to play a major role in structuring metacommunities irrespective of site watercourse position. Filtering promoted strong turnover patterns, especially in disconnected upstream sites. The greater role of spatial factors mid-and downstream was consistent with mass effects rather than neutral processes because these sites had lower total beta-diversity than upstream sites. Motile species were most strongly affected by mass effects processes, whereas low profile species were primarily influenced by environmental conditions. Collectively, these findings suggest that partitioning of total beta-diversity into its components and the use of diatom ecological guilds provide a useful framework for assessing the mechanisms underlying metacommunity patterns along the stream watercourse.Peer reviewe

Biogeographical Patterns of Species Richness and Abundance Distribution in Stream Diatoms Are Driven by Climate and Water Chemistry

In this intercontinental study of stream diatoms, we asked three important but still unresolved ecological questions: (1) What factors drive the biogeography of species richness and species abundance distribution (SAD)? (2) Are climate-related hypotheses, which have dominated the research on the latitudinal and altitudinal diversity gradients, adequate in explaining spatial biotic variability? and (3) Is the SAD response to the environment independent of richness? We tested a number of climatic theories and hypotheses (i.e., the species-energy theory, the metabolic theory, the energy variability hypothesis, and the climatic tolerance hypothesis) but found no support for any of these concepts, as the relationships of richness with explanatory variables were nonexistent, weak, or unexpected. Instead, we demonstrated that diatom richness and SAD evenness generally increased with temperature seasonality and at mid- to high total phosphorus concentrations. The spatial patterns of diatom richness and the SADmainly longitudinal in the United States but latitudinal in Finlandwere defined primarily by the covariance of climate and water chemistry with space. The SAD was not entirely controlled by richness, emphasizing its utility for ecological research. Thus, we found support for the operation of both climate and water chemistry mechanisms in structuring diatom communities, which underscores their complex response to the environment and the necessity for novel predictive frameworks.Peer reviewe

Dispersal-niche continuum index : a new quantitative metric for assessing the relative importance of dispersal versus niche processes in community assembly

Patterns in community composition are scale-dependent and generally difficult to distinguish. Therefore, quantifying the main assembly processes in various systems and across different datasets has remained challenging. Building on the PER-SIMPER method, we propose a new metric, the dispersal-niche continuum index (DNCI), which estimates whether dispersal or niche processes dominate community assembly and facilitates the comparisons of processes among datasets. The DNCI was tested for robustness using simulations and applied to observational datasets comprising organismal groups with different trophic level and dispersal potential. Based on the robustness tests, the DNCI discriminated the respective contribution of niche and dispersal processes in pairwise comparisons of site groups with less than 40% and 30% differences in their taxa and site numbers, respectively. In the observational datasets, the DNCI suggested that dispersal rather than niche assembly was the dominant assembly process which, however, varied in intensity among organismal groups and study contexts, including spatial scale and ecosystem types. The proposed DNCI measures the relative strength of community assembly processes in a way that is simple, easily quantifiable and comparable across datasets. We discuss the strengths and weaknesses of the DNCI and provide perspectives for future research.Peer reviewe

Diatom_environment_data

Data comprising diatom abundances, diatom guild information and associated climatic and other environmental data. Abbreviations for sites: An = Antilles, Fi = Finland, Fr = France, Nz = New Zealand, Re = La Reunion, Us = United States

Data from: Stream diatoms exhibit weak niche conservation along global environmental and climatic gradients

Niche conservatism (NC) describes the scenario in which species retain similar characteristics or traits over time and space, and thus has potentially important implications for understanding their biogeographic distributions. Evidence consistent with NC includes similar niche properties across geographically distant regions. We investigated whether NC was evident in stream diatom morphospecies by modeling species responses to environmental and climatic variables in a set of calibration sites (from the US) and then evaluated the models with test sets (from France, Finland, New Zealand, Antilles and La Réunion). We also examined whether diatom species showed congruency in environmental niche optima and niche breadths between the study regions, and whether species occupancy and functional traits influenced the observed patterns. We used boosted regression tree models with local environmental variables and climatic variables as predictors. We detected low NC in both environmental and climate models and a lack of consistent differences in NC between widely distributed and regionally rare species and among functional groups. For all species, diatom environmental and climatic optima varied clearly between the regions but showed some positive relationships especially for pH and total phosphorus. Diatom niche breadths were only weakly correlated between the US and the other regions. We demonstrated that diatoms showed overall relatively little NC globally, and NC was especially low for climatic variables. Collectively, these findings suggest that there may exist locally adapted lineages within the diatom morphospecies or diatoms possess some adaptation potential for differences in temperature. We argue that in diatoms, environmental and especially climate models may not be transferrable in space globally but need regional diatom data for calibration because species niches seem to differ among geographical regions

A metacommunity approach for detecting species influenced by mass effect

Mass effect, allowing species to persist in unfavourable habitats, and dispersal limitation, preventing species from reaching favourable habitats, are the two major dispersal processes. While dispersal limitation can be detected by experimental or modelling techniques, mass effect is more challenging to evaluate, which hampers our ability to disentangle the influence of the environment versus dispersal on species distribution. This is undesirable for biomonitoring programs built on known species-environment relationships. We developed an approach for detection of species influenced by mass effect. We tested it on stream diatoms, a widely used taxonomic group for stream biomonitoring, from four French watersheds. This approach combined (a) an appropriate spatial framework, the asymmetric eigenvector map (AEM), used in species distribution modelling to measure the relative influence of dispersal versus niche processes, (b) an analysis of negative co-occurrence patterns to separate mass effect from dispersal limitation and (c) a measurement of niche breadths to distinguish between non-spatially structured generalists and species influenced by mass effect. We propose that species characterized by low negative co-occurrence values, a high correlation to spatial factors and average to low niche breadths are sensitive to mass effect. Synthesis and applications. We suggest that the sensitivity of species towards mass effect should represent a new ecological trait to be considered for fundamental and applied issues concerning ecology and water quality assessment. Almost all of the species identified here as influenced by mass effect are contributing to the calculation of different diatom-based indices (e.g. Biological Diatom Index or Specific Pollution-sensitivity Index) and should be treated with caution when assigning ecological status classes to water bodies

Scientists' Warning to Humanity : Rapid degradation of the world's large lakes

Large lakes of the world are habitats for diverse species, including endemic taxa, and are valuable resources that provide humanity with many ecosystem services. They are also sentinels of global and local change, and recent studies in limnology and paleolimnology have demonstrated disturbing evidence of their collective degradation in terms of depletion of resources (water and food), rapid warming and loss of ice, destruction of habitats and ecosystems, loss of species, and accelerating pollution. Large lakes are particularly exposed to anthropogenic and climatic stressors. The Second Warning to Humanity provides a framework to assess the dangers now threatening the world's large lake ecosystems and to evaluate pathways of sustainable development that are more respectful of their ongoing provision of services. Here we review current and emerging threats to the large lakes of the world, including iconic examples of lake management failures and successes, from which we identify priorities and approaches for future conservation efforts. The review underscores the extent of lake resource degradation, which is a result of cumulative perturbation through time by long-term human impacts combined with other emerging stressors. Decades of degradation of large lakes have resulted in major challenges for restoration and management and a legacy of ecological and economic costs for future generations. Large lakes will require more intense conservation efforts in a warmer, increasingly populated world to achieve sustainable, high-quality waters. This Warning to Humanity is also an opportunity to highlight the value of a long-term lake observatory network to monitor and report on environmental changes in large lake ecosystems. (C) 2020 The Authors. Published by Elsevier B.V. on behalf of International Association for Great Lakes Research.Peer reviewe

Stream diatom community assembly processes in islands and continents : A global perspective

Peer reviewe

Stream diatom community assembly processes in islands and continents : a global perspective

Abstract: Aim: Understanding the roles of deterministic and stochastic processes in community assembly is essential for gaining insights into the biogeographical patterns of biodiversity. However, the way community assembly processes operate is still not fully understood, especially in oceanic islands. In this study, we examine the importance of assembly processes in shaping diatom communities in islands and continents, while also investigating the influence of climate and local water chemistry variables on species distributions.Location: Global.Taxon: Stream benthic diatoms.Methods: We used diatom datasets from five continents and 19 islands and applied beta diversity analyses with a null model approach and hierarchical joint species distribution modelling. To facilitate comparisons with continents, we used continental area equivalents (CAEs), which represent continental subsets with comparable areas and the same number of study sites as their corresponding islands counterparts.Results: We found that homogeneous selection (i.e., communities being more similar than the random expectation) was the dominant assembly process within islands whereas stochastic processes tended to be more important within continents. In addition, assembly processes were influenced by study scale and island isolation. Climatic variables showed a greater influence on species distribution than local factors. However, in islands, local environmental variables had a greater impact on the distributions of unique taxa as opposed to non-unique taxa.Main Conclusions: We observed that the assembly processes of diatom communities were complex and influenced by a combination of deterministic and stochastic forces, which varied across spatial scales. In islands, there was no universal pattern of assembly processes, given that their influence depends on abiotic conditions such as area, isolation, and environmental heterogeneity. In addition, the sensitivity of species occurring uniquely in islands to local environmental variables suggests that they are perhaps less vulnerable to climatic changes but may be more influenced by changes in local physicochemistry