Valence structures of aromatic bioactive compounds: a combined theoretical and experimental study.

Valence electronic structures of three recently isolated aryl bioactive compounds, namely 2-phenylethanol (2PE), p-hydroxyphenylethanol (HPE) and 4-hydroxybenzaldehyde (HBA), are studied using a combined theoretical and experimental method. Density functional theory-based calculations indicate that the side chains cause electron charge redistribution and therefore influence the aromaticity of the benzene derivatives. The simulated IR spectra further reveal features induced by the side chains. Solvent effects on the IR spectra are simulated using the polarizable continuum model, which exhibits enhancement of the O-H stretch vibrations with significant red-shift of 464 cm(-1) in 2PE. A significant spectral peak splitting of 94 cm(-1) between O(4)-H and O(8)-H of HPE is revealed in an aqueous environment. Experimental measurements for valence binding energy spectra for 2PE, HPE and HBA are presented and analyzed using outer-valence Green function calculations. The experimental (predicted) first ionization energies are measured as 9.19 (8.79), 8.47 (8.27) and 8.97 (8.82) eV for 2PE, HPE and HBA, respectively. The frontier orbitals (highest occupied molecular orbitals, HOMOs, and lowest unoccupied molecular orbitals, LUMOs) have similar atomic orbital characters although the HOMO-LUMO energy gaps are quite different

Adsorption of cytosine and aza derivatives of cytidine on Au single crystal surfaces

The adsorption of cytosine on the Au(111) and Au(110) surfaces has been studied using both aqueous deposition and evaporation in vacuum to prepare the samples. Soft X-ray photoelectron spectroscopy (XPS) and near edge X-ray absorption fine structure spectroscopy (NEXAFS) were used to determine the electronic structure and orientation of the adsorbates. In addition, three derivatives of cytosine, 6-azacytosine, 6-azacytidine and 5- azacytidine, were studied. Monolayer films of the latter three samples were adsorbed on Au(111) from aqueous solution, and the nature of bonding was determined. Spectra have been interpreted in the light of published calculations of free cytosine molecules and new ab initio calculations of the other compounds. Surface core level shifts of Au 4f imply that all of these compounds are chemisorbed. Cytosine adsorbs as a single tautomer, but in two chemical states with different surface-molecule bonding. For deposition in vacuum, a flat-lying molecular state bonded through the N(3) atom of the pyrimidine ring dominates, but a second state is also present. For deposition from solution, the second state dominates, with the molecular plane no longer parallel to the surface. This state also bonds through the N(3) atom, but in addition interacts with the surface via the amino group. Two tautomers of 6-azacytosine were observed, and they and 6-azacytidine adsorb with similar geometries, chemically bonding via the azacytosine ring. The ribose ring does not appear to perturb the adsorption of azacytidine compared with azacytosine. The azacytosine ring is nearly but not perfectly parallel to the surface, like 5-azacytidine, which adsorbs as an imino tautomer. ...Comment: 40 pages, 3 tables and 8 figure

Bonding of Histidine to Cerium Oxide

Adsorption of histidine on cerium oxide model surfaces was investigated by synchrotron radiation photoemission, resonant photoemission, and near edge X-ray absorption fine structure spectroscopies. Histidine was evaporated in a vacuum onto ordered stoichiometric CeO₂(111) and partially reduced CeO_1.9 thin films grown on Cu(111). Histidine binds to CeO₂ in anionic form via the carboxylate group and all three nitrogen atoms, with the imidazole ring parallel to the surface. The amino nitrogen atom of the imidazole ring (IM) is deprotonated, and both IM nitrogen atoms form strong bonds via π orbitals, while the α-amino nitrogen interacts with the oxide via its hydrogen atoms. In the case of CeO_1.9, the deprotonation of the amino nitrogen of the imidazole ring is less pronounced and N K-edge spectra do not show a clear orientation of the ring with respect to the surface. A minor reduction of the cerium surface on adsorption of histidine was observed and explained by charge exchange as a result of hybridization of the π orbitals of the IM ring with the f and d orbitals of ceria. Knowledge of histidine adsorption on the cerium oxide surface can be used for design of mediator-less biosensors where the histidine-containing proteins can be strongly bound to the oxide surface via the imidazole side chain of this residue

Adsorption of Cytosine and AZA Derivatives of Cytidine on Au Single Crystal Surfaces

The adsorption of cytosine on the Au(111) and Au(110) surfaces has been studied using both aqueous deposition and evaporation in vacuum to prepare the samples. Soft X-ray photoelectron spectroscopy (XPS) and near edge X-ray absorption fine structure spectroscopy (NEXAFS) were used to determine the electronic structure and orientation of the adsorbates. In addition, three derivatives of cytosine, 6-azacytosine, 6-azacytidine, and 5-azacytidine, were studied. Monolayer films of the latter three samples were adsorbed on Au(111) from aqueous solution, and the nature of bonding was determined. Spectra have been interpreted in the light of published calculations of free cytosine molecules and new ab initio calculations of the other compounds. Surface core level shifts of Au 4f imply that all of these compounds are chemisorbed. Cytosine adsorbs as a single tautomer but in two chemical states with different surface-molecule bonding. For deposition in vacuum, a flat-lying molecular state bonded through the N₍₃₎ atom of the pyrimidine ring dominates, but a second state is also present. For deposition from solution, the second state dominates, with the molecular plane no longer parallel to the surface. This state also bonds through the N₍₃₎ atom, but in addition interacts with the surface via the amino group. Two tautomers of 6-azacytosine were observed, and they and 6-azacytidine adsorb with similar geometries, chemically bonding via the azacytosine ring. The ribose ring does not appear to perturb the adsorption of azacytidine compared with azacytosine. The azacytosine ring is nearly but not perfectly parallel to the surface, like 5-azacytidine, which adsorbs as an imino tautomer. This work highlights the complications, which can occur when medicinally significant compounds are adsorbed on gold, for example, in drug delivery systems, but also the amount of chemical information and detailed understanding that can be extracted from such complex systems