Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Towards a cross-cultural assessment of binge-watching: Psychometric evaluation of the “watching TV series motives” and “binge-watching engagement and symptoms” questionnaires across nine languages

In view of the growing interest regarding binge-watching (i.e., watching multiple episodes of television (TV) series in a single sitting) research, two measures were developed and validated to assess binge-watching involvement (“Binge-Watching Engagement and Symptoms Questionnaire”, BWESQ) and related motivations (“Watching TV Series Motives Questionnaire”, WTSMQ). To promote international and cross-cultural binge-watching research, the present article reports on the validation of these questionnaires in nine languages (English, French, Spanish, Italian, German, Hungarian, Persian, Arabic, Chinese). Both questionnaires were disseminated, together with additional self-report measures of happiness, psychopathological symptoms, impulsivity and problematic internet use among TV series viewers from a college/university student population (N = 12,616) in 17 countries. Confirmatory factor, measurement invariance and correlational analyses were conducted to establish structural and construct validity. The two questionnaires had good psychometric properties and fit in each language. Equivalence across languages and gender was supported, while construct validity was evidenced by similar patterns of associations with complementary measures of happiness, psychopathological symptoms, impulsivity and problematic internet use. The results support the psychometric validity and utility of the BWESQ and WTSMQ for conducting cross-cultural research on binge-watching

Archiving women in film and television

This output is a documentary film. It results from a collaboration between Hooper, documentary/artist filmmaker, and historians/archivists on Archiving Women in Film & Television. The documentary includes video interviews with archivists, historians and filmmakers, and it represents archive material from Feminist Archive North (FAN). Research Process: Drawing upon a larger project, ‘Feminist Archives, Feminist Futures’ (Dr Kate Dossett and Dr Gina Denton, University of Leeds), Archiving Women in Film & Television focused on collections of women in film and television held at FAN, including the papers of Leeds Animation Workshop and Vera Media (independent feminist filmmaking collectives based in Leeds), and the Women’s Film, Television and Video Network. Hooper directed, filmed and edited the documentary. In addition to interviews, other project footage gathered includes conference material, workshops at Leeds City Museum and at Glasgow Women’s Library as part of the Radical Film Network Conference. Public screenings and Q&As held as part of the project at Hyde Park Picture House, Leeds, over the course of three years were documented. Research Insights: The film serves as a possible means to share academic research and inquiry into women’s filmmaking and television history with a broader audience. It is also a conscious recognition of the digital archive created as part of the process of the research project. This edited cut is a precursor to a pilot interactive documentary. Dissemination: The research was disseminated at the following: Presentation and workshop, Glasgow Women’s Library, Radical Film Network Unconference, April 2016. Paper & workshop, Women’s History Month, Leeds City Museum, March 2016. Presentation and workshop, i-Docs Symposium, UWE Bristol, March 2016. Feminist Filmmaking Screenings, Hyde Park Picture House, May 2015, May 2016 and May 2017

Can a Simple Dietary Index Derived from a Sub-Set of Questionnaire Items Assess Diet Quality in a Sample of Australian Adults?

Large, longitudinal surveys often lack consistent dietary data, limiting the use of existing tools and methods that are available to measure diet quality. This study describes a method that was used to develop a simple index for ranking individuals according to their diet quality in a longitudinal study. The RESIDential Environments (RESIDE) project (2004–2011) collected dietary data in varying detail, across four time points. The most detailed dietary data were collected using a 24-item questionnaire at the final time point (n = 555; age ≥ 25 years). At preceding time points, sub-sets of the 24 items were collected. A RESIDE dietary guideline index (RDGI) that was based on the 24-items was developed to assess diet quality in relation to the Australian Dietary Guidelines. The RDGI scores were regressed on the longitudinal sub-sets of six and nine questionnaire items at T4, from which two simple index scores (S-RDGI1 and S-RDGI2) were predicted. The S-RDGI1 and S-RDGI2 showed reasonable agreement with the RDGI (Spearman’s rho = 0.78 and 0.84; gross misclassification = 1.8%; correct classification = 64.9% and 69.7%; and, Cohen’s weighted kappa = 0.58 and 0.64, respectively). For all of the indices, higher diet quality was associated with being female, undertaking moderate to high amounts of physical activity, not smoking, and self-reported health. The S-RDGI1 and S-RDGI2 explained 62% and 73% of the variation in RDGI scores, demonstrating that a large proportion of the variability in diet quality scores can be captured using a relatively small sub-set of questionnaire items. The methods described in this study can be applied elsewhere, in situations where limited dietary data are available, to generate a sample-specific score for ranking individuals according to diet quality

A 3D motion analysis study comparing the effectiveness of cervical spine orthoses at restricting spinal motion through physiological range

Objective: To compare the effectiveness of the Aspen, Aspen Vista, Philadelphia, Miami-J and Miami-J Advanced collars at restricting cervical spine movement in the sagittal, coronal and axial planes. Methods: Nineteen healthy volunteers (12 female, 7 male) were recruited to the study. Collars were fitted by an approved physiotherapist. Eight ProReflex (Qualisys, Sweden) infrared cameras were used to track the movement of retro-reflective marker clusters placed in predetermined positions on the head and trunk. 3D kinematic data were collected during forward flexion, extension, lateral bending and axial rotation from uncollared to collared subjects. The physiological range of motion in the three planes was analysed using the Qualisys Track Manager System. Results: The Aspen and Philadelphia were significantly more effective at restricting flexion/extension than the Vista (p < 0.001), Miami-J (p < 0.001 and p < 0.01) and Miami-J Advanced (p < 0.01 and p < 0.05). The Aspen was significantly more effective at restricting rotation than the Vista (p < 0.001) and the Miami-J (p < 0.05). The Vista was significantly the least effective collar at restricting lateral bending (p < 0.001). Conclusion: Our motion analysis study found the Aspen collar to be superior to the other collars when measuring restriction of movement of the cervical spine in all planes, particularly the sagittal and transverse planes, while the Aspen Vista was the least effective collar

STRIPAK components determine mode of cancer cell migration and metastasis

The contractile actomyosin cytoskeleton and its connection to the plasma membrane are critical for control of cell shape and migration. We identify three STRIPAK complex components, FAM40A, FAM40B and STRN3, as regulators of the actomyosin cortex. We show that FAM40A negatively regulates the MST3 and MST4 kinases, which promote the co-localization of the contractile actomyosin machinery with the Ezrin/Radixin/Moesin family proteins by phosphorylating the inhibitors of PPP1CB, PPP1R14A-D. Using computational modelling, in vitro cell migration assays and in vivo breast cancer metastasis assays we demonstrate that co-localization of contractile activity and actin-plasma membrane linkage reduces cell speed on planar surfaces, but favours migration in confined environments similar to those observed in vivo. We further show that FAM40B mutations found in human tumours uncouple it from PP2A and enable it to drive a contractile phenotype, which may underlie its role in human cancer

Biodiversity loss and its impact on humanity

The most unique feature of Earth is the existence of life, and the most extraordinary feature of life is its diversity. Approximately 9 million types of plants, animals, protists and fungi inhabit the earth. So, too, do 7 billion people. Two decades ago, at the first Earth Summit, the vast majority of the world's nations declared that human actions were dismantling Earth's ecosystems, eliminating genes, 30 species, and biological traits at an alarming rate. This observation led to a daunting question: How will loss of biological diversity alter the functioning of ecosystems and their ability to provide society with the goods and services needed to prosper