6,177 research outputs found
ProtDCal: A program to compute general-purpose-numerical descriptors for sequences and 3D-structures of proteins
Background: The exponential growth of protein structural and sequence databases is enabling multifaceted approaches to understanding the long sought sequence-structure-function relationship. Advances in computation now make it possible to apply well-established data mining and pattern recognition techniques to these data to learn models that effectively relate structure and function.
Challenges of Profile Likelihood Evaluation in Multi-Dimensional SUSY Scans
Statistical inference of the fundamental parameters of supersymmetric
theories is a challenging and active endeavor. Several sophisticated algorithms
have been employed to this end. While Markov-Chain Monte Carlo (MCMC) and
nested sampling techniques are geared towards Bayesian inference, they have
also been used to estimate frequentist confidence intervals based on the
profile likelihood ratio. We investigate the performance and appropriate
configuration of MultiNest, a nested sampling based algorithm, when used for
profile likelihood-based analyses both on toy models and on the parameter space
of the Constrained MSSM. We find that while the standard configuration is
appropriate for an accurate reconstruction of the Bayesian posterior, the
profile likelihood is poorly approximated. We identify a more appropriate
MultiNest configuration for profile likelihood analyses, which gives an
excellent exploration of the profile likelihood (albeit at a larger
computational cost), including the identification of the global maximum
likelihood value. We conclude that with the appropriate configuration MultiNest
is a suitable tool for profile likelihood studies, indicating previous claims
to the contrary are not well founded.Comment: 21 pages, 9 figures, 1 table; minor changes following referee report.
Matches version accepted by JHE
Annihilation vs. Decay: Constraining dark matter properties from a gamma-ray detection
Most proposed dark matter candidates are stable and are produced thermally in
the early Universe. However, there is also the possibility of unstable (but
long-lived) dark matter, produced thermally or otherwise. We propose a strategy
to distinguish between dark matter annihilation and/or decay in the case that a
clear signal is detected in gamma-ray observations of Milky Way dwarf
spheroidal galaxies with gamma-ray experiments. The sole measurement of the
energy spectrum of an indirect signal would render the discrimination between
these cases impossible. We show that by examining the dependence of the
intensity and energy spectrum on the angular distribution of the emission, the
origin could be identified as decay, annihilation, or both. In addition, once
the type of signal is established, we show how these measurements could help to
extract information about the dark matter properties, including mass,
annihilation cross section, lifetime, dominant annihilation and decay channels,
and the presence of substructure. Although an application of the approach
presented here would likely be feasible with current experiments only for very
optimistic dark matter scenarios, the improved sensitivity of upcoming
experiments could enable this technique to be used to study a wider range of
dark matter models.Comment: 29 pp, 8 figs; replaced to match published version (minor changes and
some new references
Search for Narrow Diphoton Resonances and for gamma-gamma+W/Z Signatures in p\bar p Collisions at sqrt(s)=1.8 TeV
We present results of searches for diphoton resonances produced both
inclusively and also in association with a vector boson (W or Z) using 100
pb^{-1} of p\bar p collisions using the CDF detector. We set upper limits on
the product of cross section times branching ratio for both p\bar
p\to\gamma\gamma + X and p\bar p\to\gamma\gamma + W/Z. Comparing the inclusive
production to the expectations from heavy sgoldstinos we derive limits on the
supersymmetry-breaking scale sqrt{F} in the TeV range, depending on the
sgoldstino mass and the choice of other parameters. Also, using a NLO
prediction for the associated production of a Higgs boson with a W or Z boson,
we set an upper limit on the branching ratio for H\to\gamma\gamma. Finally, we
set a lower limit on the mass of a `bosophilic' Higgs boson (e.g. one which
couples only to \gamma, W, and Z$ bosons with standard model couplings) of 82
GeV/c^2 at 95% confidence level.Comment: 30 pages, 11 figure
Measurement of the Strong Coupling Constant from Inclusive Jet Production at the Tevatron Collider
We report a measurement of the strong coupling constant, ,
extracted from inclusive jet production in collisions at
1800 GeV. The QCD prediction for the evolution of with
jet transverse energy is tested over the range 40<<450 GeV using
for the renormalization scale. The data show good agreement with QCD in
the region below 250 GeV. In the text we discuss the data-theory comparison in
the region from 250 to 450 GeV. The value of at the mass of the
boson averaged over the range 40<<250 GeV is found to be
. The associated theoretical uncertainties are mainly due to the choice
of renormalization scale (^{+6%}_{-4%}) and input parton distribution
functions (5%).Comment: 7 pages, 3 figures, using RevTeX. Submitted to Physical Review
Letter
The Raychaudhuri equations: a brief review
We present a brief review on the Raychaudhuri equations. Beginning with a
summary of the essential features of the original article by Raychaudhuri and
subsequent work of numerous authors, we move on to a discussion of the
equations in the context of alternate non--Riemannian spacetimes as well as
other theories of gravity, with a special mention on the equations in
spacetimes with torsion (Einstein--Cartan--Sciama--Kibble theory). Finally, we
give an overview of some recent applications of these equations in General
Relativity, Quantum Field Theory, String Theory and the theory of relativisitic
membranes. We conclude with a summary and provide our own perspectives on
directions of future research.Comment: 35 pages, two figures, to appear in the special issue of Pramana
dedicated to the memory of A. K. Raychaudhur
Measurements of the properties of Lambda_c(2595), Lambda_c(2625), Sigma_c(2455), and Sigma_c(2520) baryons
We report measurements of the resonance properties of Lambda_c(2595)+ and
Lambda_c(2625)+ baryons in their decays to Lambda_c+ pi+ pi- as well as
Sigma_c(2455)++,0 and Sigma_c(2520)++,0 baryons in their decays to Lambda_c+
pi+/- final states. These measurements are performed using data corresponding
to 5.2/fb of integrated luminosity from ppbar collisions at sqrt(s) = 1.96 TeV,
collected with the CDF II detector at the Fermilab Tevatron. Exploiting the
largest available charmed baryon sample, we measure masses and decay widths
with uncertainties comparable to the world averages for Sigma_c states, and
significantly smaller uncertainties than the world averages for excited
Lambda_c+ states.Comment: added one reference and one table, changed order of figures, 17
pages, 15 figure
The Relation Between the Surface Brightness and the Diameter for Galactic Supernova Remnants
In this work, we have constructed a relation between the surface brightness
() and diameter (D) of Galactic C- and S-type supernova remnants
(SNRs). In order to calibrate the -D dependence, we have carefully
examined some intrinsic (e.g. explosion energy) and extrinsic (e.g. density of
the ambient medium) properties of the remnants and, taking into account also
the distance values given in the literature, we have adopted distances for some
of the SNRs which have relatively more reliable distance values. These
calibrator SNRs are all C- and S-type SNRs, i.e. F-type SNRs (and S-type SNR
Cas A which has an exceptionally high surface brightness) are excluded. The
Sigma-D relation has 2 slopes with a turning point at D=36.5 pc: (at 1
GHz)=8.4 D
WmHzster (for
WmHzster and D36.5 pc) and (at 1
GHz)=2.7 10 D
WmHzster (for
WmHzster and D36.5 pc). We discussed the theoretical
basis for the -D dependence and particularly the reasons for the change
in slope of the relation were stated. Added to this, we have shown the
dependence between the radio luminosity and the diameter which seems to have a
slope close to zero up to about D=36.5 pc. We have also adopted distance and
diameter values for all of the observed Galactic SNRs by examining all the
available distance values presented in the literature together with the
distances found from our -D relation.Comment: 45 pages, 2 figures, accepted for publication in Astronomical and
Astrophysical Transaction
Search for Long-lived Charged Massive Particles in anti-p p Collisions at s**1/2 = 1.8 TeV
We report a search for production of long-lived charged massive particles in
a data sample of 90 pb^{-1} of \sqrt{s} = 1.8 TeV p anti-p collisions recorded
by the Collider Detector at Fermilab (CDF). The search uses the muon-like
penetration and anomalously high ionization energy loss signature expected for
such a particle to discriminate it from backgrounds. The data is found to agree
with background expectations, and cross section limits of \cal{O} (1) pb are
derived using two reference models, a stable quark and a stable scalar lepton.Comment: 14 pages, 3 figure
Search for a New Heavy Gauge Boson Wprime with Electron + missing ET Event Signature in ppbar collisions at sqrt(s)=1.96 TeV
We present a search for a new heavy charged vector boson decaying
to an electron-neutrino pair in collisions at a center-of-mass
energy of 1.96\unit{TeV}. The data were collected with the CDF II detector
and correspond to an integrated luminosity of 5.3\unit{fb}^{-1}. No
significant excess above the standard model expectation is observed and we set
upper limits on . Assuming standard
model couplings to fermions and the neutrino from the boson decay to
be light, we exclude a boson with mass less than
1.12\unit{TeV/}c^2 at the 95\unit{%} confidence level.Comment: 7 pages, 2 figures Submitted to PR
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