SpeckleNN: A unified embedding for real-time speckle pattern classification in X-ray single-particle imaging with limited labeled examples

With X-ray free-electron lasers (XFELs), it is possible to determine the three-dimensional structure of noncrystalline nanoscale particles using X-ray single-particle imaging (SPI) techniques at room temperature. Classifying SPI scattering patterns, or "speckles", to extract single hits that are needed for real-time vetoing and three-dimensional reconstruction poses a challenge for high data rate facilities like European XFEL and LCLS-II-HE. Here, we introduce SpeckleNN, a unified embedding model for real-time speckle pattern classification with limited labeled examples that can scale linearly with dataset size. Trained with twin neural networks, SpeckleNN maps speckle patterns to a unified embedding vector space, where similarity is measured by Euclidean distance. We highlight its few-shot classification capability on new never-seen samples and its robust performance despite only tens of labels per classification category even in the presence of substantial missing detector areas. Without the need for excessive manual labeling or even a full detector image, our classification method offers a great solution for real-time high-throughput SPI experiments

On a three-dimensional and two four-dimensional oncolytic viro-therapy models

We revisit here and carry out further works on tumor-virotherapy compartmental models of [Tian, 2011, Wang et al., 2013, Phan and Tian, 2017, Guo et al., 2019]. The results of these papers are only slightly pushed further. However, what is new is the fact that we make public our electronic notebooks, since we believe that easy electronic reproducibility is crucial in an era in which the role of the software becomes very important.Comment: 41 pages, 15 figure

The P174L mutation in human Sco1 severely compromises Cox17-dependent metallation but does not impair copper binding.

International audienceSco1 is a metallochaperone that is required for copper delivery to the Cu(A) site in the CoxII subunit of cytochrome c oxidase. The only known missense mutation in human Sco1, a P174L substitution in the copper-binding domain, is associated with a fatal neonatal hepatopathy; however, the molecular basis for dysfunction of the protein is unknown. Immortalized fibroblasts from a SCO1 patient show a severe deficiency in cytochrome c oxidase activity that was partially rescued by overexpression of P174L Sco1. The mutant protein retained the ability to bind Cu(I) and Cu(II) normally when expressed in bacteria, but Cox17-mediated copper transfer was severely compromised both in vitro and in a yeast cytoplasmic assay. The corresponding P153L substitution in yeast Sco1 was impaired in suppressing the phenotype of cells harboring the weakly functional C57Y allele of Cox17; however, it was functional in sco1delta yeast when the wild-type COX17 gene was present. Pulse-chase labeling of mitochondrial translation products in SCO1 patient fibroblasts showed no change in the rate of CoxII translation, but there was a specific and rapid turnover of CoxII protein in the chase. These data indicate that the P174L mutation attenuates a transient interaction with Cox17 that is necessary for copper transfer. They further suggest that defective Cox17-mediated copper metallation of Sco1, as well as the subsequent failure of Cu(A) site maturation, is the basis for the inefficient assembly of the cytochrome c oxidase complex in SCO1 patients

Unlocking Community Capabilities Across Health Systems in Low- and Middle-Income Countries: Lessons Learned from Research and Reflective Practice

The right and responsibility of communities to participate in health service delivery was enshrined in the 1978 Alma Ata declaration and continues to feature centrally in health systems debates today. Communities are a vital part of people-centred health systems and their engagement is critical to realizing the diverse health targets prioritised by the Sustainable Development Goals and the commitments made to Universal Health Coverage. Community members' intimate knowledge of local needs and adaptive capacities are essential in constructively harnessing global transformations related to epidemiological and demographic transitions, urbanization, migration, technological innovation and climate change. Effective community partnerships and governance processes that underpin community capability also strengthen local resilience, enabling communities to better manage shocks, sustain gains, and advocate for their needs through linkages to authorities and services. This is particularly important given how power relations mark broader contexts of resource scarcity and concentration, struggles related to social liberties and other types of ongoing conflicts.IS

Severe lung fibrosis requires an invasive fibroblast phenotype regulated by hyaluronan and CD44

Hyaluronan synthase 2 and CD44 are required for severe lung fibrosis in response to bleomycin

Middle Eastern Cities in a Time of Climate Crisis

The climate crisis is hitting around the world, including in the Middle East and its cities. Urban regions are exposed to increasingly frequent heat waves and floods that leave decision makers without immediate answers. In the context of this global crisis, this book addresses the need for a better understanding of the current model of urban expansion. Cities are major sources of greenhouse gas (GHG) emissions but they are also celebrated for their contribution to economic growth. The current moment is one of a large paradigm shift as climate change is now recognized as a legitimate public problem. This is especially true for city dwellers, who are increasingly exposed to climate change, the loss of biodiversity and heavy pollution while natural breathing spaces continue to shrink around them. The sixteen chapters of this book do not offer any off-the-rack or technical solutions, but they analyze the urban conundrum and the contribution of cities to the climate crisis. Some chapters focus on individual car ownership, land privatization, waste management and land use changes under the guise of development. Others explore local and contextual answers to urban governance issues. With the support of CEDEJ and the Friedrich-Ebert-Stiftung, researchers, experts and civil society actors explore the ongoing transformations of Middle Eastern urban environments and mobilities and question them in relation to the climate crisis. The contributions are based on empirical knowledge gathered in the Nile Delta, the Greater Cairo Region, Riyadh and Beirut. Without concessions to mainstream thinking, this book contributes to a better understanding of urban challenges, climate threats and policy responses in contexts marked by growing environmental inequalities

iPTF Archival Search for Fast Optical Transients

There has been speculation about a class of relativistic explosions with an initial Lorentz factor Γ_(init) smaller than that of classical gamma-ray bursts (GRBs). These "dirty fireballs" would lack prompt GRB emission but could be pursued via their optical afterglow, appearing as transients that fade overnight. Here we report a search for such transients (that fade by 5-σ in magnitude overnight) in four years of archival photometric data from the intermediate Palomar Transient Factory (iPTF). Our search criteria yielded 50 candidates. Of these, two were afterglows to GRBs that had been found in dedicated follow-up observations to triggers from the Fermi GRB Monitor. Another (iPTF14yb) was a GRB afterglow discovered serendipitously. Eight were spurious artifacts of reference image subtraction, and one was an asteroid. The remaining 38 candidates have red stellar counterparts in external catalogs. The photometric and spectroscopic properties of the counterparts identify these transients as strong flares from M dwarfs of spectral type M3–M7 at distances of d ≈ 0.15–2.1 kpc; three counterparts were already spectroscopically classified as late-type M stars. With iPTF14yb as the only confirmed relativistic outflow discovered independently of a high-energy trigger, we constrain the all-sky rate of transients that peak at m = 18 and fade by Δm = 2 mag in Δt = 3 hr to be 680 yr^(-1), with a 68% confidence interval of 119-2236, yr^(-1). This implies that the rate of visible dirty fireballs is at most comparable to that of the known population of long-duration GRBs

Happiness around the world: A combined etic-emic approach across 63 countries.

What does it mean to be happy? The vast majority of cross-cultural studies on happiness have employed a Western-origin, or "WEIRD" measure of happiness that conceptualizes it as a self-centered (or "independent"), high-arousal emotion. However, research from Eastern cultures, particularly Japan, conceptualizes happiness as including an interpersonal aspect emphasizing harmony and connectedness to others. Following a combined emic-etic approach (Cheung, van de Vijver & Leong, 2011), we assessed the cross-cultural applicability of a measure of independent happiness developed in the US (Subjective Happiness Scale; Lyubomirsky & Lepper, 1999) and a measure of interdependent happiness developed in Japan (Interdependent Happiness Scale; Hitokoto & Uchida, 2015), with data from 63 countries representing 7 sociocultural regions. Results indicate that the schema of independent happiness was more coherent in more WEIRD countries. In contrast, the coherence of interdependent happiness was unrelated to a country's "WEIRD-ness." Reliabilities of both happiness measures were lowest in African and Middle Eastern countries, suggesting these two conceptualizations of happiness may not be globally comprehensive. Overall, while the two measures had many similar correlates and properties, the self-focused concept of independent happiness is "WEIRD-er" than interdependent happiness, suggesting cross-cultural researchers should attend to both conceptualizations

Mutations in the Mitochondrial Methionyl-tRNA Synthetase Cause a Neurodegenerative Phenotype in Flies and a Recessive Ataxia (ARSAL) in Humans

The study of Drosophila neurodegenerative mutants combined with genetic and biochemical analyses lead to the identification of multiple complex mutations in 60 patients with a novel form of ataxia/leukoencephalopathy