Identification of Differential Agronomic Traits in Early Stage Teosinte, Flint, Dent, and Sugar (Sweet) Corn Varieties in Competition with Weeds

Weed competition reduces corn yield. Today’s corn monoculture relies heavily on herbicide inputs to maintain yield. However, teosinte, corn’s ancestor, was successfully grown in mixed production systems. Harnessing genes and traits that allow teosinte to be a better competitor but which may have been lost during corn domestication could help producers reduce herbicide inputs and maintain yield. The first step to finding those genes is to identify varieties of corn and lines of teosinte that have a higher tolerance of weeds or greater weed suppressive ability. Five introductions of teosinte and 14 varieties of corn (including dent, heritage, and sweet corn types) were cultivated with and without weed pressure. Early and end of season growth characteristics including leaf area, plant height, stem diameter, biomass, and yield, when possible, indicated a wide range of weed tolerance. Differences between weedy and weed-free treatments within a type ranged from 1-10% in corn height, 3-20% in leaf area, 1-27% in corn biomass (July), 0.4-28% in top collar height (September), and 2-17% in grain yield on a per cob basis at harvest (October). Varieties demonstrating the greatest and least deviations in these measurements between treatments have been selected for preliminary molecular analysis (data not available at this time). Identifying early season growth characteristics and gene expression associated with maintaining high yield under weed stress conditions can, in the long term, lead to better understanding the mechanisms of crop tolerance, its heritability, and reducing weed control inputs

Determination of Population Structure of Wheat Core Collection for Association Mapping

The microsatellites, as one of the most robust markers for identification of wheat varieties, were used for assessment of genetic diversity and population structure to promote effective use of genetic resources. In this study, the set of 284 wheat varieties were genotyped using 30 microsatellite markers. The chosen SSR markers were located among almost all linkage groups and covered all three genomes. The genotypes used originate from 24 different breeding centers worldwide and are included in an extensive core collection of the Institute of Field and Vegetable Crops in Novi Sad, Serbia. The total number of detected alleles was 349 at all analyzed loci. The average number of detected allelic variant per locus was 11.5. The mean value of polymorphic information content was 0.68. According to the probability of data obtained by program Structure, the results have shown presence of 6 subpopulations within the studied set of genotypes. The population structure positively correlated to some extent with geographic origin. The available pedigree data were included for additional explanation of population structure. The results of this study should provide valuable information for future association studies using the diverse wheat breeding material

Reproducibility in the absence of selective reporting : An illustration from large-scale brain asymmetry research

Altres ajuts: Max Planck Society (Germany).The problem of poor reproducibility of scientific findings has received much attention over recent years, in a variety of fields including psychology and neuroscience. The problem has been partly attributed to publication bias and unwanted practices such as p-hacking. Low statistical power in individual studies is also understood to be an important factor. In a recent multisite collaborative study, we mapped brain anatomical left-right asymmetries for regional measures of surface area and cortical thickness, in 99 MRI datasets from around the world, for a total of over 17,000 participants. In the present study, we revisited these hemispheric effects from the perspective of reproducibility. Within each dataset, we considered that an effect had been reproduced when it matched the meta-analytic effect from the 98 other datasets, in terms of effect direction and significance threshold. In this sense, the results within each dataset were viewed as coming from separate studies in an "ideal publishing environment," that is, free from selective reporting and p hacking. We found an average reproducibility rate of 63.2% (SD = 22.9%, min = 22.2%, max = 97.0%). As expected, reproducibility was higher for larger effects and in larger datasets. Reproducibility was not obviously related to the age of participants, scanner field strength, FreeSurfer software version, cortical regional measurement reliability, or regional size. These findings constitute an empirical illustration of reproducibility in the absence of publication bias or p hacking, when assessing realistic biological effects in heterogeneous neuroscience data, and given typically-used sample sizes

Risk profiles and one-year outcomes of patients with newly diagnosed atrial fibrillation in India: Insights from the GARFIELD-AF Registry.

BACKGROUND: The Global Anticoagulant Registry in the FIELD-Atrial Fibrillation (GARFIELD-AF) is an ongoing prospective noninterventional registry, which is providing important information on the baseline characteristics, treatment patterns, and 1-year outcomes in patients with newly diagnosed non-valvular atrial fibrillation (NVAF). This report describes data from Indian patients recruited in this registry. METHODS AND RESULTS: A total of 52,014 patients with newly diagnosed AF were enrolled globally; of these, 1388 patients were recruited from 26 sites within India (2012-2016). In India, the mean age was 65.8 years at diagnosis of NVAF. Hypertension was the most prevalent risk factor for AF, present in 68.5% of patients from India and in 76.3% of patients globally (P < 0.001). Diabetes and coronary artery disease (CAD) were prevalent in 36.2% and 28.1% of patients as compared with global prevalence of 22.2% and 21.6%, respectively (P < 0.001 for both). Antiplatelet therapy was the most common antithrombotic treatment in India. With increasing stroke risk, however, patients were more likely to receive oral anticoagulant therapy [mainly vitamin K antagonist (VKA)], but average international normalized ratio (INR) was lower among Indian patients [median INR value 1.6 (interquartile range {IQR}: 1.3-2.3) versus 2.3 (IQR 1.8-2.8) (P < 0.001)]. Compared with other countries, patients from India had markedly higher rates of all-cause mortality [7.68 per 100 person-years (95% confidence interval 6.32-9.35) vs 4.34 (4.16-4.53), P < 0.0001], while rates of stroke/systemic embolism and major bleeding were lower after 1 year of follow-up. CONCLUSION: Compared to previously published registries from India, the GARFIELD-AF registry describes clinical profiles and outcomes in Indian patients with AF of a different etiology. The registry data show that compared to the rest of the world, Indian AF patients are younger in age and have more diabetes and CAD. Patients with a higher stroke risk are more likely to receive anticoagulation therapy with VKA but are underdosed compared with the global average in the GARFIELD-AF. CLINICAL TRIAL REGISTRATION-URL: http://www.clinicaltrials.gov. Unique identifier: NCT01090362

Parâmetros genéticos de caracteres relacionados à tolerância à deficiência hídrica em milho tropical Genetic parameters of drought tolerance related traits in tropical maize

A seleção de caracteres relacionados à tolerância à deficiência hídrica em milho tem sido objeto de interesse em programas de melhoramento, principalmente em virtude da ineficiência da seleção para produzir grãos nessas condições. O objetivo deste trabalho foi estimar parâmetros genéticos em duas populações de milho tropical. Foram avaliadas duas populações (denominadas D e U) com 256 progênies F2:3, no delineamento em látice 16 x 16 em sete ou nove ambientes e densidade populacional de 62.500 plantas ha-1. Diferenças significativas foram constatadas entre progênies (P), ambientes (A) e para a interação P x A em ambas as populações. Os coeficientes de herdabilidade em nível de médias de progênies variaram entre 73,52% para prolificidade na população D e 95,88% para florescimento feminino (FF) na população U. No caráter produção de grãos (PG) houve correlação genética significativa nas populações U e D, respectivamente, com prolificidade (0,79 e 0,88) e florescimento feminino (-0,76 e -0,44); na população U com florescimento masculino (-0,74) e; na população D com stay-green (-0,50). Não foi constatada correlação genética significativa entre PG e intervalo entre florescimentos (IF). Os parâmetros genéticos estimados sugerem que a utilização de índices de seleção que incluam, além de PG, caracteres como prolificidade, FF e SG na seleção de progênies sob condições normais de umidade, poderia propiciar o desenvolvimento de material com alta produtividade e boa tolerância a estresses hídricos.<br>The selection of drought tolerance related traits in maize has been object of interest in improvement programs, mainly in function of the selection inefficiency for grain yield on these conditions. The objective of this work was to estimate genetic parameters in two populations of tropical maize. Two populations (called D and U) with 256 F2:3 progenies had been evaluated in a 16x16 simple lattice, in seven and nine environments with population density of 62,500 plants ha-1. Significant differences were observed among line (P), environments (A) and for the P x A interaction in both populations. The heritability coefficients at progenies level average had varied between 73.52% for prolificacy in population D and 95.88% for female flowering (FF) in population U. Grain yield (PG) presented significant genetic correlation in populations U and D, respectively, with prolificacy (0,79 and 0.88) and female flowering (-0,76 and -0,44); in population U with male flowering (-0.74) and; in population D with stay-green (-0.50). No genetic correlation was observed between PG and anthesis-silking interval (IF). Estimated of genetic parameters suggest that the use of selection indices that include, besides PG, characters as prolificacy, FF and SG in the selection process under conditions of normal water supply, could lead to the development of cultivars with high grain yield and good drought tolerance